Wall clock time and date at job start Mon Mar 30 2020 04:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00094 * 3 2 1 5 5 H 1.48495 * 109.47248 * 30.00330 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00515 * 3 2 1 7 7 C 1.38816 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99917 * 160.68675 * 7 2 1 9 9 N 1.36931 * 120.00353 * 340.68764 * 7 2 1 10 10 C 1.50168 * 120.53512 * 336.53810 * 9 7 2 11 11 C 1.46240 * 107.53328 * 109.61598 * 10 9 7 12 12 C 1.52525 * 114.28186 * 58.40486 * 11 10 9 13 13 C 1.50124 * 105.41492 * 270.60169 * 12 11 10 14 14 H 1.09006 * 109.20788 * 337.37809 * 13 12 11 15 15 N 1.46904 * 109.20853 * 218.02823 * 13 12 11 16 16 C 1.46846 * 110.99535 * 306.76094 * 15 13 12 17 17 C 1.53036 * 109.52464 * 185.83870 * 16 15 13 18 18 C 1.53121 * 109.27646 * 300.82121 * 17 16 15 19 19 C 1.53114 * 109.15800 * 57.65698 * 18 17 16 20 20 C 1.46843 * 111.00153 * 70.96715 * 15 13 12 21 21 C 1.54834 * 110.82039 * 97.68155 * 13 12 11 22 22 C 1.43437 * 120.54170 * 156.56473 * 9 7 2 23 23 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.85047 * 350.10005 * 10 9 7 25 25 H 1.09005 * 109.89901 * 229.14754 * 10 9 7 26 26 H 1.09007 * 108.51930 * 297.16076 * 11 10 9 27 27 H 1.08997 * 108.39925 * 179.56179 * 11 10 9 28 28 H 1.08991 * 110.25012 * 151.62781 * 12 11 10 29 29 H 1.08998 * 110.24873 * 29.56777 * 12 11 10 30 30 H 1.08997 * 109.46596 * 65.82234 * 16 15 13 31 31 H 1.09004 * 109.46373 * 305.85559 * 16 15 13 32 32 H 1.09003 * 109.50609 * 180.88161 * 17 16 15 33 33 H 1.09004 * 109.50215 * 60.76442 * 17 16 15 34 34 H 1.09000 * 109.51772 * 177.55948 * 18 17 16 35 35 H 1.08991 * 109.52333 * 297.74673 * 18 17 16 36 36 H 1.08999 * 109.50741 * 62.28639 * 19 18 17 37 37 H 1.09004 * 109.50223 * 182.40403 * 19 18 17 38 38 H 1.09000 * 109.45909 * 54.15118 * 20 15 13 39 39 H 1.08997 * 109.45607 * 294.17346 * 20 15 13 40 40 H 1.08994 * 109.36502 * 81.33601 * 21 13 12 41 41 H 1.09008 * 109.36263 * 200.92998 * 21 13 12 42 42 H 1.09003 * 108.15643 * 33.26036 * 22 9 7 43 43 H 1.08997 * 108.15860 * 150.03599 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0446 -1.2284 -0.3099 9 7 1.3833 -2.3549 0.3911 10 6 0.1829 -2.3024 1.2919 11 6 -0.9826 -2.6841 0.4953 12 6 -0.8845 -4.0690 -0.1361 13 6 -0.2315 -3.8538 -1.4706 14 1 -0.3808 -2.8193 -1.7803 15 7 -0.8475 -4.7480 -2.4600 16 6 -0.8244 -6.1411 -1.9965 17 6 -1.3389 -7.0586 -3.1081 18 6 -2.7663 -6.6489 -3.4814 19 6 -2.7706 -5.1803 -3.9144 20 6 -2.2146 -4.3173 -2.7794 21 6 1.2868 -4.1476 -1.3942 22 6 1.8629 -3.6321 -0.0518 23 1 -0.4850 0.8400 0.0004 24 1 0.0530 -1.2909 1.6768 25 1 0.3097 -2.9998 2.1199 26 1 -1.1144 -1.9497 -0.2994 27 1 -1.8622 -2.6582 1.1384 28 1 -1.8790 -4.4952 -0.2672 29 1 -0.2707 -4.7233 0.4830 30 1 -1.4616 -6.2423 -1.1181 31 1 0.1970 -6.4211 -1.7383 32 1 -1.3364 -8.0910 -2.7583 33 1 -0.6940 -6.9683 -3.9822 34 1 -3.1210 -7.2719 -4.3025 35 1 -3.4193 -6.7761 -2.6181 36 1 -2.1482 -5.0605 -4.8012 37 1 -3.7909 -4.8706 -4.1407 38 1 -2.2030 -3.2725 -3.0898 39 1 -2.8453 -4.4272 -1.8972 40 1 1.4511 -5.2225 -1.4688 41 1 1.7936 -3.6484 -2.2202 42 1 2.9471 -3.5732 -0.1476 43 1 1.6317 -4.3676 0.7186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:50 Heat of formation + Delta-G solvation = 23.247706 kcal Electronic energy + Delta-G solvation = -20410.371817 eV Core-core repulsion = 17683.765610 eV Total energy + Delta-G solvation = -2726.606208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.47826 -37.04491 -34.04893 -31.71937 -31.56654 -30.59619 -29.35126 -25.95405 -24.58083 -23.60736 -22.81228 -21.89043 -20.03458 -19.40667 -18.26820 -16.67084 -15.72787 -14.97945 -14.68012 -14.49271 -14.13553 -13.78407 -13.56441 -13.41074 -13.21505 -12.77667 -12.17275 -12.08666 -11.96720 -11.73675 -11.27933 -11.17851 -10.99770 -10.74925 -10.67591 -10.50483 -10.36548 -10.29904 -10.01511 -9.84406 -9.69394 -9.54482 -9.40257 -9.22972 -8.38777 -7.68006 -6.65923 -5.74797 -3.13361 3.40433 3.47861 3.50546 4.36296 4.55065 4.97417 5.01967 5.07243 5.38208 5.42940 5.45547 5.59625 5.67687 5.72609 5.78309 5.86124 5.92915 5.98752 6.03104 6.13316 6.14280 6.17483 6.25768 6.33195 6.42243 6.45505 6.50771 6.59788 6.64765 6.83012 6.89780 7.00391 7.04766 7.23252 7.30866 7.61115 7.69911 7.76211 7.79188 8.02044 8.47528 9.23936 9.91838 10.45412 11.32596 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.006102 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.411360 B = 4587.779517 C = 4774.755221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.127 4.127 12 C -0.141 4.141 13 C 0.099 3.901 14 H 0.092 0.908 15 N -0.539 5.539 16 C 0.052 3.948 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.056 3.944 21 C -0.131 4.131 22 C 0.159 3.841 23 H 0.251 0.749 24 H 0.088 0.912 25 H 0.003 0.997 26 H 0.100 0.900 27 H 0.021 0.979 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 -11.323 -3.756 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.043 3.957 11 C -0.166 4.166 12 C -0.179 4.179 13 C -0.008 4.008 14 H 0.110 0.890 15 N -0.263 5.263 16 C -0.076 4.076 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.072 4.072 21 C -0.172 4.172 22 C 0.030 3.970 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.021 0.979 26 H 0.118 0.882 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.571 -11.125 -4.168 12.729 hybrid contribution -0.204 0.836 0.599 1.049 sum -4.775 -10.288 -3.568 11.890 Atomic orbital electron populations 1.69967 1.05064 1.25071 1.54576 1.24881 0.95223 0.98126 1.01436 0.86353 0.79207 0.83980 0.77578 1.21618 1.21727 1.20700 1.19200 0.93478 0.85322 1.39483 0.91583 1.44232 1.33512 1.00948 1.52237 1.20129 0.85404 1.00239 0.89898 1.20924 0.98016 0.95523 1.02088 1.21668 0.98652 0.99074 0.98547 1.21744 0.93918 0.96687 0.88423 0.88971 1.62177 1.18006 1.01877 1.44207 1.22057 1.00747 0.89206 0.95593 1.21590 0.96380 0.97988 0.99430 1.21558 0.97037 0.96587 1.00506 1.21583 1.00133 0.94697 0.98921 1.22009 0.89354 0.99128 0.96697 1.22958 0.94486 0.98649 1.01147 1.20393 0.96186 0.88119 0.92313 0.93870 0.89347 0.97898 0.88156 0.96002 0.93622 0.92660 0.95159 0.90802 0.92290 0.91438 0.92437 0.92627 0.91395 0.92175 0.90936 0.95154 0.93440 0.92808 0.94978 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 9.42 55.49 0.52 -24.35 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.56 29.60 -169.99 -5.03 16.53 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.62 9.63 -15.06 -0.14 -6.76 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.45 2.60 -175.08 -0.46 -14.91 16 10 C 0.17 3.94 5.24 -5.20 -0.03 3.91 16 11 C -0.13 -2.75 5.02 -30.19 -0.15 -2.91 16 12 C -0.14 -2.66 4.01 -28.40 -0.11 -2.77 16 13 C 0.10 1.92 1.97 -68.17 -0.13 1.79 16 14 H 0.09 2.17 6.63 -51.93 -0.34 1.82 16 15 N -0.54 -8.99 4.59 -227.25 -1.04 -10.03 16 16 C 0.05 0.76 4.76 -3.83 -0.02 0.74 16 17 C -0.12 -1.40 6.09 -26.65 -0.16 -1.57 16 18 C -0.12 -1.37 6.00 -26.61 -0.16 -1.53 16 19 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 20 C 0.06 0.87 5.16 -3.83 -0.02 0.85 16 21 C -0.13 -2.55 5.93 -24.76 -0.15 -2.69 16 22 C 0.16 3.38 5.18 -4.66 -0.02 3.36 16 23 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 25 H 0.00 0.06 8.13 -51.93 -0.42 -0.36 16 26 H 0.10 2.51 5.29 -51.92 -0.27 2.23 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.82 5.38 -51.93 -0.28 0.54 16 29 H 0.05 1.04 6.28 -51.93 -0.33 0.72 16 30 H 0.03 0.45 6.64 -51.93 -0.34 0.11 16 31 H 0.07 1.09 6.08 -51.93 -0.32 0.77 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 39 H 0.03 0.48 6.66 -51.93 -0.35 0.14 16 40 H 0.05 0.82 5.98 -51.93 -0.31 0.51 16 41 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 43 H 0.02 0.50 6.88 -51.93 -0.36 0.14 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -26.86 304.80 -10.16 -37.02 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.39 Total: 0.40 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.35 Total: -9.26 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.98 Total: -49.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.86 -10.16 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.267 kcal (2) G-P(sol) polarization free energy of solvation -26.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds