Wall clock time and date at job start Mon Mar 30 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00094 * 3 2 1 5 5 H 1.48495 * 109.47248 * 30.00330 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00515 * 3 2 1 7 7 C 1.38816 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99917 * 160.68675 * 7 2 1 9 9 N 1.36931 * 120.00353 * 340.68764 * 7 2 1 10 10 C 1.50168 * 120.53512 * 336.53810 * 9 7 2 11 11 C 1.46240 * 107.53328 * 109.61598 * 10 9 7 12 12 C 1.52525 * 114.28186 * 58.40486 * 11 10 9 13 13 C 1.50124 * 105.41492 * 270.60169 * 12 11 10 14 14 H 1.09006 * 109.20788 * 337.37809 * 13 12 11 15 15 N 1.46904 * 109.20853 * 218.02823 * 13 12 11 16 16 C 1.46846 * 110.99535 * 306.76094 * 15 13 12 17 17 C 1.53036 * 109.52464 * 185.83870 * 16 15 13 18 18 C 1.53121 * 109.27646 * 300.82121 * 17 16 15 19 19 C 1.53114 * 109.15800 * 57.65698 * 18 17 16 20 20 C 1.46843 * 111.00153 * 70.96715 * 15 13 12 21 21 C 1.54834 * 110.82039 * 97.68155 * 13 12 11 22 22 C 1.43437 * 120.54170 * 156.56473 * 9 7 2 23 23 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.85047 * 350.10005 * 10 9 7 25 25 H 1.09005 * 109.89901 * 229.14754 * 10 9 7 26 26 H 1.09007 * 108.51930 * 297.16076 * 11 10 9 27 27 H 1.08997 * 108.39925 * 179.56179 * 11 10 9 28 28 H 1.08991 * 110.25012 * 151.62781 * 12 11 10 29 29 H 1.08998 * 110.24873 * 29.56777 * 12 11 10 30 30 H 1.08997 * 109.46596 * 65.82234 * 16 15 13 31 31 H 1.09004 * 109.46373 * 305.85559 * 16 15 13 32 32 H 1.09003 * 109.50609 * 180.88161 * 17 16 15 33 33 H 1.09004 * 109.50215 * 60.76442 * 17 16 15 34 34 H 1.09000 * 109.51772 * 177.55948 * 18 17 16 35 35 H 1.08991 * 109.52333 * 297.74673 * 18 17 16 36 36 H 1.08999 * 109.50741 * 62.28639 * 19 18 17 37 37 H 1.09004 * 109.50223 * 182.40403 * 19 18 17 38 38 H 1.09000 * 109.45909 * 54.15118 * 20 15 13 39 39 H 1.08997 * 109.45607 * 294.17346 * 20 15 13 40 40 H 1.08994 * 109.36502 * 81.33601 * 21 13 12 41 41 H 1.09008 * 109.36263 * 200.92998 * 21 13 12 42 42 H 1.09003 * 108.15643 * 33.26036 * 22 9 7 43 43 H 1.08997 * 108.15860 * 150.03599 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0446 -1.2284 -0.3099 9 7 1.3833 -2.3549 0.3911 10 6 0.1829 -2.3024 1.2919 11 6 -0.9826 -2.6841 0.4953 12 6 -0.8845 -4.0690 -0.1361 13 6 -0.2315 -3.8538 -1.4706 14 1 -0.3808 -2.8193 -1.7803 15 7 -0.8475 -4.7480 -2.4600 16 6 -0.8244 -6.1411 -1.9965 17 6 -1.3389 -7.0586 -3.1081 18 6 -2.7663 -6.6489 -3.4814 19 6 -2.7706 -5.1803 -3.9144 20 6 -2.2146 -4.3173 -2.7794 21 6 1.2868 -4.1476 -1.3942 22 6 1.8629 -3.6321 -0.0518 23 1 -0.4850 0.8400 0.0004 24 1 0.0530 -1.2909 1.6768 25 1 0.3097 -2.9998 2.1199 26 1 -1.1144 -1.9497 -0.2994 27 1 -1.8622 -2.6582 1.1384 28 1 -1.8790 -4.4952 -0.2672 29 1 -0.2707 -4.7233 0.4830 30 1 -1.4616 -6.2423 -1.1181 31 1 0.1970 -6.4211 -1.7383 32 1 -1.3364 -8.0910 -2.7583 33 1 -0.6940 -6.9683 -3.9822 34 1 -3.1210 -7.2719 -4.3025 35 1 -3.4193 -6.7761 -2.6181 36 1 -2.1482 -5.0605 -4.8012 37 1 -3.7909 -4.8706 -4.1407 38 1 -2.2030 -3.2725 -3.0898 39 1 -2.8453 -4.4272 -1.8972 40 1 1.4511 -5.2225 -1.4688 41 1 1.7936 -3.6484 -2.2202 42 1 2.9471 -3.5732 -0.1476 43 1 1.6317 -4.3676 0.7186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:49 Heat of formation + Delta-G solvation = 8.684249 kcal Electronic energy + Delta-G solvation = -20411.003336 eV Core-core repulsion = 17683.765610 eV Total energy + Delta-G solvation = -2727.237727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89135 -38.58617 -35.59052 -33.45286 -33.34292 -31.74696 -30.93653 -27.77415 -26.10808 -25.26707 -23.98805 -23.37776 -21.72896 -20.76984 -19.73514 -18.56865 -17.12209 -16.88981 -16.19099 -15.82153 -15.70067 -15.15468 -15.01446 -14.89339 -14.67420 -14.06765 -13.72246 -13.66615 -13.56924 -13.20262 -13.05502 -12.83446 -12.64132 -12.34492 -12.09199 -11.94078 -11.85675 -11.72754 -11.58069 -11.34769 -11.25600 -11.20662 -11.04283 -10.85505 -10.41104 -9.03162 -8.63520 -7.80818 -5.21408 1.47055 1.49629 1.58111 2.55507 3.06329 3.32484 3.62229 3.91934 3.93447 4.07939 4.10381 4.24468 4.38913 4.41852 4.47625 4.54782 4.61091 4.68107 4.72009 4.80571 4.86892 4.89116 4.94062 5.03143 5.06680 5.09840 5.16584 5.21607 5.26126 5.30812 5.34468 5.38932 5.50399 5.52867 5.62923 5.69181 5.73787 6.15425 6.33010 6.39834 6.44087 7.19927 7.93426 8.43989 9.23549 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.006102 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.411360 B = 4587.779517 C = 4774.755221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.044 4.044 3 Si 0.957 3.043 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.259 4.259 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.170 3.830 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.112 3.888 14 H 0.042 0.958 15 N -0.545 5.545 16 C 0.050 3.950 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.110 4.110 20 C 0.055 3.945 21 C -0.121 4.121 22 C 0.154 3.846 23 H 0.246 0.754 24 H 0.056 0.944 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.030 0.970 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -13.536 -4.022 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.240 4.240 3 Si 0.786 3.214 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.046 3.954 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.003 3.997 14 H 0.061 0.939 15 N -0.269 5.269 16 C -0.078 4.078 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.162 4.162 22 C 0.026 3.974 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.874 -13.364 -4.439 14.902 hybrid contribution -0.104 1.504 0.680 1.654 sum -4.978 -11.861 -3.759 13.401 Atomic orbital electron populations 1.70136 1.05948 1.25057 1.55239 1.25522 0.95996 1.00652 1.01798 0.85442 0.78188 0.80574 0.77173 1.21774 1.21990 1.20098 1.19397 0.93505 0.86610 1.39372 0.92094 1.44367 1.33717 1.01487 1.52735 1.20041 0.85907 0.98917 0.90502 1.20736 0.97602 0.96425 1.00882 1.21513 0.99531 0.97263 0.97895 1.21368 0.94239 0.94781 0.89265 0.93937 1.62155 1.18683 1.02765 1.43281 1.22170 1.00997 0.87912 0.96686 1.21584 0.96512 0.98529 0.98326 1.21561 0.96770 0.95599 1.01454 1.21559 1.00654 0.95276 0.97306 1.22035 0.88814 0.98679 0.97732 1.22817 0.94187 0.99980 0.99208 1.20518 0.96102 0.87163 0.93632 0.94502 0.92517 0.96036 0.91669 0.95202 0.92285 0.91724 0.95144 0.90772 0.89961 0.91777 0.90241 0.92269 0.91834 0.90605 0.93284 0.95483 0.90587 0.94866 0.95131 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 9.42 21.65 0.20 -52.10 16 2 C -0.04 -2.43 4.92 84.86 0.42 -2.01 16 3 Si 0.96 45.19 29.60 68.60 2.03 47.22 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.26 -14.21 9.63 84.04 0.81 -13.40 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.60 -29.80 2.60 -707.81 -1.84 -31.64 16 10 C 0.17 8.07 5.24 83.58 0.44 8.51 16 11 C -0.12 -5.16 5.02 28.36 0.14 -5.01 16 12 C -0.12 -4.53 4.01 29.51 0.12 -4.41 16 13 C 0.11 4.31 1.97 44.61 0.09 4.40 16 14 H 0.04 2.09 6.63 -2.38 -0.02 2.07 16 15 N -0.54 -17.66 4.59 -872.88 -4.00 -21.66 16 16 C 0.05 1.31 4.76 86.33 0.41 1.72 16 17 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 18 C -0.12 -2.26 6.00 30.67 0.18 -2.07 16 19 C -0.11 -2.55 6.09 30.65 0.19 -2.37 16 20 C 0.06 1.69 5.16 86.33 0.45 2.13 16 21 C -0.12 -4.61 5.93 31.87 0.19 -4.43 16 22 C 0.15 6.43 5.18 87.60 0.45 6.88 16 23 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 24 H 0.06 3.05 6.05 -2.39 -0.01 3.04 16 25 H 0.02 0.94 8.13 -2.38 -0.02 0.92 16 26 H 0.06 3.39 5.29 -2.38 -0.01 3.37 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 2.01 5.38 -2.39 -0.01 2.00 16 29 H 0.06 2.28 6.28 -2.39 -0.01 2.26 16 30 H 0.03 0.81 6.64 -2.39 -0.02 0.80 16 31 H 0.07 1.94 6.08 -2.38 -0.01 1.93 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.69 7.99 -2.39 -0.02 1.67 16 39 H 0.03 0.83 6.66 -2.39 -0.02 0.82 16 40 H 0.08 2.47 5.98 -2.39 -0.01 2.45 16 41 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.03 1.27 7.99 -2.39 -0.02 1.25 16 43 H 0.04 1.66 6.88 -2.39 -0.02 1.65 16 Total: -1.00 -58.71 304.80 1.42 -57.29 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.97 Total: 13.08 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.07 Total: -12.18 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -5.64 Total: -105.41 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -58.71 1.42 -57.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.972 kcal (2) G-P(sol) polarization free energy of solvation -58.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds