Wall clock time and date at job start Mon Mar 30 2020 04:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00131 * 2 1 4 4 H 1.48493 * 109.47340 * 239.99863 * 3 2 1 5 5 H 1.48499 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46734 * 120.00212 * 3 2 1 7 7 C 1.37873 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99732 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00335 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.46847 * 111.00204 * 65.79242 * 10 9 7 12 12 C 1.53036 * 109.52103 * 185.83852 * 11 10 9 13 13 C 1.53123 * 109.30986 * 300.83344 * 12 11 10 14 14 C 1.53124 * 109.15731 * 57.59723 * 13 12 11 15 15 H 1.09004 * 109.50145 * 62.36720 * 14 13 12 16 16 C 1.52999 * 109.50442 * 182.44234 * 14 13 12 17 17 N 1.46899 * 109.47192 * 183.77318 * 16 14 13 18 18 C 1.48541 * 111.00047 * 58.32311 * 17 16 14 19 19 C 1.54938 * 103.22755 * 159.71890 * 18 17 16 20 20 C 1.54595 * 102.92266 * 322.58760 * 19 18 17 21 21 C 1.47900 * 111.00121 * 175.71931 * 17 16 14 22 22 C 1.46859 * 110.99529 * 189.99624 * 10 9 7 23 23 H 0.97008 * 119.99446 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47080 * 59.99718 * 9 7 2 25 25 H 1.08999 * 109.46544 * 299.99955 * 9 7 2 26 26 H 1.08997 * 109.45833 * 305.84834 * 11 10 9 27 27 H 1.08998 * 109.46297 * 65.81958 * 11 10 9 28 28 H 1.08999 * 109.50745 * 60.75787 * 12 11 10 29 29 H 1.09000 * 109.50606 * 180.83820 * 12 11 10 30 30 H 1.08996 * 109.49784 * 297.71483 * 13 12 11 31 31 H 1.08997 * 109.55821 * 177.52240 * 13 12 11 32 32 H 1.09002 * 109.47260 * 303.77593 * 16 14 13 33 33 H 1.09003 * 109.46978 * 63.77337 * 16 14 13 34 34 H 1.08995 * 110.66579 * 278.15866 * 18 17 16 35 35 H 1.09004 * 110.66113 * 41.28787 * 18 17 16 36 36 H 1.08993 * 110.72440 * 204.22802 * 19 18 17 37 37 H 1.08996 * 110.71976 * 80.94764 * 19 18 17 38 38 H 1.09000 * 110.30884 * 263.04144 * 20 19 18 39 39 H 1.09005 * 110.30680 * 140.86763 * 20 19 18 40 40 H 1.08997 * 109.91783 * 333.51122 * 21 17 16 41 41 H 1.09000 * 109.91869 * 94.80760 * 21 17 16 42 42 H 1.08993 * 109.45790 * 54.14289 * 22 10 9 43 43 H 1.09000 * 109.46114 * 294.17642 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 2.9739 -3.6510 1.2495 12 6 4.0538 -4.7313 1.1560 13 6 3.3917 -6.0886 0.9036 14 6 2.5579 -6.0103 -0.3784 15 1 3.2111 -5.7984 -1.2249 16 6 1.8439 -7.3443 -0.6057 17 7 1.1169 -7.2994 -1.8813 18 6 2.0398 -7.0172 -3.0104 19 6 1.2521 -7.5196 -4.2464 20 6 0.5437 -8.7861 -3.7134 21 6 0.4972 -8.6077 -2.1845 22 6 1.5214 -4.8930 -0.2406 23 1 -0.4850 0.8402 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6240 -2.5574 0.8880 26 1 3.4435 -2.6813 1.4146 27 1 2.3052 -3.8767 2.0801 28 1 4.7310 -4.4988 0.3342 29 1 4.6143 -4.7673 2.0902 30 1 2.7446 -6.3397 1.7440 31 1 4.1595 -6.8542 0.7925 32 1 2.5783 -8.1493 -0.6341 33 1 1.1403 -7.5229 0.2075 34 1 2.2368 -5.9480 -3.0882 35 1 2.9701 -7.5734 -2.8950 36 1 1.9315 -7.7714 -5.0606 37 1 0.5228 -6.7758 -4.5673 38 1 1.1155 -9.6770 -3.9731 39 1 -0.4666 -8.8528 -4.1174 40 1 1.0594 -9.4060 -1.7003 41 1 -0.5372 -8.6171 -1.8409 42 1 0.9361 -4.8253 -1.1575 43 1 0.8596 -5.1128 0.5972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:16 Heat of formation + Delta-G solvation = -8.008389 kcal Electronic energy + Delta-G solvation = -19394.750228 eV Core-core repulsion = 16666.788654 eV Total energy + Delta-G solvation = -2727.961574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.33994 -37.81691 -34.09016 -32.56256 -31.59026 -29.77842 -28.77819 -26.97898 -24.98485 -23.55802 -22.08801 -21.26404 -20.75227 -20.05106 -18.94687 -16.21002 -16.04597 -15.82848 -15.13933 -14.58283 -14.19048 -14.03363 -13.87404 -13.42676 -13.09485 -12.88379 -12.61593 -12.31779 -12.05429 -11.77823 -11.52601 -11.40454 -11.27089 -11.12714 -10.98394 -10.75236 -10.62503 -10.54926 -10.44901 -10.16581 -10.03805 -9.86934 -9.49078 -9.05464 -8.36198 -8.31401 -7.07875 -5.95381 -3.96453 3.37560 3.41326 3.44432 4.02573 4.47734 4.60112 4.67848 4.88748 4.93222 5.20049 5.25441 5.32914 5.34193 5.40539 5.45515 5.48818 5.60990 5.70312 5.71619 5.78610 5.87059 5.97281 5.99081 6.07335 6.10254 6.12438 6.16547 6.27590 6.37536 6.40790 6.60168 6.77103 6.83842 6.86584 6.97074 7.13806 7.44384 7.47827 7.89114 8.21738 8.35363 8.68260 9.11384 9.67315 11.15457 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.005044 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.116969 B = 5550.058357 C = 6221.642440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.539 5.539 11 C 0.064 3.936 12 C -0.115 4.115 13 C -0.112 4.112 14 C -0.082 4.082 15 H 0.076 0.924 16 C 0.055 3.945 17 N -0.513 5.513 18 C 0.034 3.966 19 C -0.125 4.125 20 C -0.131 4.131 21 C 0.035 3.965 22 C 0.072 3.928 23 H 0.261 0.739 24 H 0.030 0.970 25 H -0.012 1.012 26 H 0.081 0.919 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -17.418 -3.402 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.263 5.263 11 C -0.065 4.065 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.101 4.101 15 H 0.094 0.906 16 C -0.073 4.073 17 N -0.237 5.237 18 C -0.093 4.093 19 C -0.163 4.163 20 C -0.169 4.169 21 C -0.093 4.093 22 C -0.057 4.057 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.006 0.994 26 H 0.099 0.901 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.864 -16.803 -3.720 17.638 hybrid contribution 0.382 0.116 0.706 0.812 sum 4.247 -16.687 -3.014 17.480 Atomic orbital electron populations 1.69963 1.06042 1.26728 1.51175 1.24987 0.94838 0.99213 0.95594 0.86584 0.79439 0.82918 0.78586 1.20203 1.21410 1.20355 1.21149 0.93401 0.90055 1.49804 0.92007 1.19664 0.90052 0.87325 0.95968 1.62009 1.27998 1.02929 1.33383 1.21924 0.94934 0.98786 0.90810 1.21600 0.98315 0.94531 1.00886 1.21574 0.98527 0.97511 0.97370 1.21239 0.97116 0.93573 0.98153 0.90563 1.22340 0.96079 0.96926 0.91995 1.64763 1.29105 1.27821 1.01968 1.23263 0.93943 1.02094 0.90050 1.22489 0.99333 0.97253 0.97207 1.22392 1.01171 0.98117 0.95193 1.22857 1.00390 0.90521 0.95553 1.21912 0.94104 0.89283 1.00366 0.92965 0.95216 0.99411 0.90108 0.96600 0.91611 0.92571 0.92650 0.92901 0.95147 0.90977 0.89182 0.94115 0.91340 0.90552 0.91911 0.91164 0.94218 0.90531 0.90497 0.96655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.52 8.43 -34.44 -0.29 -14.81 16 8 H 0.06 1.75 7.12 -52.48 -0.37 1.38 16 9 C 0.20 5.28 4.72 -4.98 -0.02 5.26 16 10 N -0.54 -12.07 4.65 -236.11 -1.10 -13.17 16 11 C 0.06 1.29 5.30 -3.83 -0.02 1.27 16 12 C -0.12 -1.83 6.09 -26.65 -0.16 -2.00 16 13 C -0.11 -1.58 5.29 -26.60 -0.14 -1.72 16 14 C -0.08 -1.24 2.15 -90.54 -0.19 -1.44 16 15 H 0.08 1.21 6.70 -51.93 -0.35 0.87 16 16 C 0.06 0.72 4.24 -3.83 -0.02 0.71 16 17 N -0.51 -6.79 4.78 -230.44 -1.10 -7.89 16 18 C 0.03 0.42 5.34 -1.89 -0.01 0.41 16 19 C -0.12 -1.30 7.06 -24.87 -0.18 -1.48 16 20 C -0.13 -1.24 6.93 -25.37 -0.18 -1.41 16 21 C 0.03 0.38 6.70 -2.75 -0.02 0.36 16 22 C 0.07 1.38 4.61 -3.83 -0.02 1.36 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 24 H 0.03 0.86 7.99 -51.93 -0.41 0.45 16 25 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 26 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.26 7.57 -51.93 -0.39 0.87 16 35 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.57 7.62 -51.93 -0.40 1.17 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -30.12 327.37 -11.02 -41.15 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.13 Total: -3.41 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.34 Total: -12.00 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.46 Total: -47.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.12 -11.02 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.138 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds