Wall clock time and date at job start Mon Mar 30 2020 04:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00131 * 2 1 4 4 H 1.48493 * 109.47340 * 239.99863 * 3 2 1 5 5 H 1.48499 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46734 * 120.00212 * 3 2 1 7 7 C 1.37873 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99732 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00335 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.46847 * 111.00204 * 65.79242 * 10 9 7 12 12 C 1.53036 * 109.52103 * 185.83852 * 11 10 9 13 13 C 1.53123 * 109.30986 * 300.83344 * 12 11 10 14 14 C 1.53124 * 109.15731 * 57.59723 * 13 12 11 15 15 H 1.09004 * 109.50145 * 62.36720 * 14 13 12 16 16 C 1.52999 * 109.50442 * 182.44234 * 14 13 12 17 17 N 1.46899 * 109.47192 * 183.77318 * 16 14 13 18 18 C 1.48541 * 111.00047 * 58.32311 * 17 16 14 19 19 C 1.54938 * 103.22755 * 159.71890 * 18 17 16 20 20 C 1.54595 * 102.92266 * 322.58760 * 19 18 17 21 21 C 1.47900 * 111.00121 * 175.71931 * 17 16 14 22 22 C 1.46859 * 110.99529 * 189.99624 * 10 9 7 23 23 H 0.97008 * 119.99446 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47080 * 59.99718 * 9 7 2 25 25 H 1.08999 * 109.46544 * 299.99955 * 9 7 2 26 26 H 1.08997 * 109.45833 * 305.84834 * 11 10 9 27 27 H 1.08998 * 109.46297 * 65.81958 * 11 10 9 28 28 H 1.08999 * 109.50745 * 60.75787 * 12 11 10 29 29 H 1.09000 * 109.50606 * 180.83820 * 12 11 10 30 30 H 1.08996 * 109.49784 * 297.71483 * 13 12 11 31 31 H 1.08997 * 109.55821 * 177.52240 * 13 12 11 32 32 H 1.09002 * 109.47260 * 303.77593 * 16 14 13 33 33 H 1.09003 * 109.46978 * 63.77337 * 16 14 13 34 34 H 1.08995 * 110.66579 * 278.15866 * 18 17 16 35 35 H 1.09004 * 110.66113 * 41.28787 * 18 17 16 36 36 H 1.08993 * 110.72440 * 204.22802 * 19 18 17 37 37 H 1.08996 * 110.71976 * 80.94764 * 19 18 17 38 38 H 1.09000 * 110.30884 * 263.04144 * 20 19 18 39 39 H 1.09005 * 110.30680 * 140.86763 * 20 19 18 40 40 H 1.08997 * 109.91783 * 333.51122 * 21 17 16 41 41 H 1.09000 * 109.91869 * 94.80760 * 21 17 16 42 42 H 1.08993 * 109.45790 * 54.14289 * 22 10 9 43 43 H 1.09000 * 109.46114 * 294.17642 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 2.9739 -3.6510 1.2495 12 6 4.0538 -4.7313 1.1560 13 6 3.3917 -6.0886 0.9036 14 6 2.5579 -6.0103 -0.3784 15 1 3.2111 -5.7984 -1.2249 16 6 1.8439 -7.3443 -0.6057 17 7 1.1169 -7.2994 -1.8813 18 6 2.0398 -7.0172 -3.0104 19 6 1.2521 -7.5196 -4.2464 20 6 0.5437 -8.7861 -3.7134 21 6 0.4972 -8.6077 -2.1845 22 6 1.5214 -4.8930 -0.2406 23 1 -0.4850 0.8402 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6240 -2.5574 0.8880 26 1 3.4435 -2.6813 1.4146 27 1 2.3052 -3.8767 2.0801 28 1 4.7310 -4.4988 0.3342 29 1 4.6143 -4.7673 2.0902 30 1 2.7446 -6.3397 1.7440 31 1 4.1595 -6.8542 0.7925 32 1 2.5783 -8.1493 -0.6341 33 1 1.1403 -7.5229 0.2075 34 1 2.2368 -5.9480 -3.0882 35 1 2.9701 -7.5734 -2.8950 36 1 1.9315 -7.7714 -5.0606 37 1 0.5228 -6.7758 -4.5673 38 1 1.1155 -9.6770 -3.9731 39 1 -0.4666 -8.8528 -4.1174 40 1 1.0594 -9.4060 -1.7003 41 1 -0.5372 -8.6171 -1.8409 42 1 0.9361 -4.8253 -1.1575 43 1 0.8596 -5.1128 0.5972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:15 Heat of formation + Delta-G solvation = -27.687572 kcal Electronic energy + Delta-G solvation = -19395.603581 eV Core-core repulsion = 16666.788654 eV Total energy + Delta-G solvation = -2728.814927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51262 -39.13364 -35.76798 -34.28155 -33.13231 -30.98961 -29.67935 -29.03102 -26.19357 -25.43586 -23.45152 -22.69258 -21.67781 -21.38904 -20.29581 -18.43701 -17.11040 -16.80376 -16.75052 -16.14563 -15.87460 -15.38813 -15.14246 -14.88089 -14.37339 -14.14603 -13.93182 -13.86713 -13.52746 -13.16216 -13.04827 -12.77726 -12.61047 -12.55053 -12.31205 -12.20017 -12.02494 -11.94931 -11.80687 -11.57314 -11.42518 -11.39023 -11.08838 -10.91546 -10.60879 -9.26581 -8.97876 -8.19994 -6.31121 1.40248 1.44456 1.52380 2.40469 3.08094 3.11587 3.30467 3.74931 3.82277 3.94575 4.04111 4.06218 4.15960 4.26851 4.38807 4.43247 4.53287 4.66160 4.69428 4.71934 4.79421 4.79811 4.84708 4.95507 4.96272 5.00525 5.03692 5.10465 5.10683 5.19524 5.24375 5.27116 5.31350 5.36096 5.38621 5.54041 5.66209 6.03626 6.06934 6.18020 6.40249 6.70063 6.85632 7.38781 8.91282 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.005044 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.116969 B = 5550.058357 C = 6221.642440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.544 5.544 11 C 0.062 3.938 12 C -0.106 4.106 13 C -0.107 4.107 14 C -0.071 4.071 15 H 0.071 0.929 16 C 0.063 3.937 17 N -0.540 5.540 18 C 0.034 3.966 19 C -0.124 4.124 20 C -0.125 4.125 21 C 0.033 3.967 22 C 0.077 3.923 23 H 0.264 0.736 24 H -0.003 1.003 25 H -0.046 1.046 26 H 0.059 0.941 27 H 0.007 0.993 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -18.918 -3.440 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.268 5.268 11 C -0.066 4.066 12 C -0.144 4.144 13 C -0.145 4.145 14 C -0.090 4.090 15 H 0.090 0.910 16 C -0.066 4.066 17 N -0.265 5.265 18 C -0.093 4.093 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.094 4.094 22 C -0.051 4.051 23 H 0.073 0.927 24 H 0.015 0.985 25 H -0.028 1.028 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 5.893 -18.332 -3.757 19.619 hybrid contribution -0.307 0.571 0.717 0.966 sum 5.587 -17.762 -3.040 18.866 Atomic orbital electron populations 1.70108 1.07893 1.27977 1.51746 1.25976 0.95758 1.03371 0.94696 0.85390 0.78121 0.77623 0.79202 1.19206 1.20745 1.19073 1.21430 0.93576 0.90991 1.50162 0.91822 1.19309 0.90129 0.89374 0.92782 1.61974 1.26979 1.03020 1.34853 1.21989 0.95621 0.99697 0.89304 1.21554 0.96767 0.93698 1.02401 1.21574 0.99136 0.97266 0.96518 1.21151 0.95995 0.92995 0.98901 0.91047 1.22234 0.96384 0.95896 0.92053 1.64707 1.29781 1.29725 1.02294 1.23208 0.94676 1.00697 0.90745 1.22484 0.99252 0.97427 0.97004 1.22386 1.01737 0.98148 0.94006 1.22904 1.00117 0.89654 0.96747 1.21910 0.95171 0.89320 0.98706 0.92679 0.98468 1.02810 0.92292 0.97468 0.91665 0.89778 0.92233 0.89380 0.92761 0.91146 0.91878 0.92859 0.89504 0.92037 0.89980 0.90604 0.92843 0.90958 0.92587 0.97793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.52 -31.07 8.43 25.60 0.22 -30.86 16 8 H 0.06 3.68 7.12 -2.91 -0.02 3.66 16 9 C 0.21 12.10 4.72 85.56 0.40 12.51 16 10 N -0.54 -25.37 4.65 -900.93 -4.19 -29.55 16 11 C 0.06 2.54 5.30 86.33 0.46 3.00 16 12 C -0.11 -3.17 6.09 30.65 0.19 -2.98 16 13 C -0.11 -2.73 5.29 30.68 0.16 -2.57 16 14 C -0.07 -2.09 2.15 -10.74 -0.02 -2.12 16 15 H 0.07 2.20 6.70 -2.39 -0.02 2.18 16 16 C 0.06 1.53 4.24 86.30 0.37 1.90 16 17 N -0.54 -13.88 4.78 -882.99 -4.22 -18.10 16 18 C 0.03 0.82 5.34 86.65 0.46 1.28 16 19 C -0.12 -2.43 7.06 31.80 0.22 -2.21 16 20 C -0.12 -2.09 6.93 31.47 0.22 -1.87 16 21 C 0.03 0.67 6.70 86.45 0.58 1.25 16 22 C 0.08 3.07 4.61 86.32 0.40 3.47 16 23 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 24 H 0.00 -0.18 7.99 -2.39 -0.02 -0.19 16 25 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 26 H 0.06 2.64 6.70 -2.39 -0.02 2.62 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.09 7.97 -2.39 -0.02 1.08 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.82 7.57 -2.39 -0.02 1.80 16 35 H 0.05 1.12 8.02 -2.39 -0.02 1.10 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.05 0.92 7.67 -2.39 -0.02 0.90 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 2.43 7.62 -2.39 -0.02 2.41 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -67.66 327.37 -1.05 -68.70 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.93 Total: 8.55 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.11 Total: -18.75 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -8.12 Total: -106.01 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.66 -1.05 -68.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.017 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds