Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48503 * 109.47426 * 240.00449 * 3 2 1 5 5 H 1.48503 * 109.47420 * 120.00389 * 3 2 1 6 6 H 1.48504 * 109.47083 * 0.02562 * 3 2 1 7 7 C 1.37874 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 172.18757 * 7 2 1 9 9 C 1.50704 * 120.00147 * 352.19198 * 7 2 1 10 10 H 1.09001 * 108.81384 * 332.68806 * 9 7 2 11 11 C 1.45877 * 108.84873 * 91.17037 * 9 7 2 12 12 C 1.54510 * 111.68250 * 182.31834 * 11 9 7 13 13 C 1.50541 * 108.85403 * 282.73867 * 12 11 9 14 14 C 1.53918 * 112.93197 * 91.76133 * 13 12 11 15 15 N 1.47952 * 113.33072 * 317.75617 * 14 13 12 16 16 C 1.46897 * 110.99995 * 192.17710 * 15 14 13 17 17 C 1.53009 * 109.47120 * 196.22648 * 16 15 14 18 18 H 1.08997 * 110.63887 * 305.57715 * 17 16 15 19 19 C 1.54590 * 110.72085 * 182.42371 * 17 16 15 20 20 C 1.53998 * 105.13921 * 219.68463 * 19 17 16 21 21 N 1.47899 * 107.05594 * 358.77435 * 20 19 17 22 22 C 1.48536 * 105.81912 * 25.33683 * 21 20 19 23 23 C 1.44393 * 113.56227 * 318.13480 * 15 14 13 24 24 H 0.97002 * 120.00041 * 184.13978 * 1 2 3 25 25 H 1.09005 * 109.03987 * 302.88422 * 11 9 7 26 26 H 1.09003 * 109.03764 * 61.74572 * 11 9 7 27 27 H 1.09000 * 109.57569 * 42.54791 * 12 11 9 28 28 H 1.08995 * 109.57409 * 162.92991 * 12 11 9 29 29 H 1.08996 * 108.79273 * 212.64843 * 13 12 11 30 30 H 1.09004 * 108.78847 * 330.87429 * 13 12 11 31 31 H 1.08993 * 108.71400 * 78.75033 * 14 13 12 32 32 H 1.09000 * 108.71353 * 196.89335 * 14 13 12 33 33 H 1.09003 * 109.47294 * 316.22826 * 16 15 14 34 34 H 1.08996 * 109.47504 * 76.22514 * 16 15 14 35 35 H 1.09001 * 110.31361 * 338.60013 * 19 17 16 36 36 H 1.09000 * 110.30758 * 100.77290 * 19 17 16 37 37 H 1.08996 * 109.91607 * 118.13419 * 20 19 17 38 38 H 1.09007 * 109.91317 * 239.23020 * 20 19 17 39 39 H 1.00893 * 111.00474 * 264.81789 * 21 20 19 40 40 H 1.09003 * 110.66281 * 202.35345 * 22 21 20 41 41 H 1.08996 * 110.66959 * 79.22188 * 22 21 20 42 42 H 1.09001 * 109.79403 * 335.77620 * 23 15 14 43 43 H 1.08995 * 109.64111 * 215.15667 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 3.1030 1.6963 1.2124 6 1 1.2842 2.7464 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0770 -1.1983 -0.1277 9 6 1.2615 -2.4932 0.1762 10 1 0.3536 -2.3038 0.7489 11 6 0.8911 -3.0068 -1.1380 12 6 0.0729 -4.3131 -1.0305 13 6 1.0105 -5.4507 -0.7257 14 6 1.1728 -5.7062 0.7834 15 7 1.3008 -4.4644 1.5775 16 6 1.7376 -4.7591 2.9488 17 6 1.4746 -3.5435 3.8401 18 1 1.9408 -2.6518 3.4210 19 6 1.9797 -3.8005 5.2784 20 6 0.9111 -3.1791 6.1969 21 7 -0.1188 -2.5800 5.3207 22 6 -0.0468 -3.3293 4.0402 23 6 2.1516 -3.4721 0.9641 24 1 -0.4850 -0.8379 0.0606 25 1 0.2959 -2.2563 -1.6582 26 1 1.7970 -3.2008 -1.7122 27 1 -0.6605 -4.2198 -0.2296 28 1 -0.4371 -4.5033 -1.9748 29 1 0.6281 -6.3566 -1.1959 30 1 1.9883 -5.2232 -1.1504 31 1 0.3049 -6.2610 1.1395 32 1 2.0641 -6.3135 0.9415 33 1 1.1829 -5.6163 3.3305 34 1 2.8035 -4.9865 2.9496 35 1 2.0624 -4.8712 5.4648 36 1 2.9421 -3.3131 5.4341 37 1 0.4635 -3.9521 6.8215 38 1 1.3623 -2.4101 6.8241 39 1 0.0573 -1.5973 5.1751 40 1 -0.4625 -2.7378 3.2245 41 1 -0.5622 -4.2860 4.1247 42 1 2.8542 -3.9566 0.2861 43 1 2.6988 -2.9310 1.7360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260243590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -11.479813 kcal Electronic energy + Delta-G solvation = -20152.110718 eV Core-core repulsion = 17423.998612 eV Total energy + Delta-G solvation = -2728.112106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.15623 -37.78983 -34.55091 -33.13927 -30.57733 -30.26430 -28.76061 -26.12739 -24.93941 -23.89446 -22.51924 -21.33195 -19.68049 -19.47317 -19.01727 -16.83564 -16.49134 -15.44768 -15.01108 -14.70874 -13.94109 -13.75854 -13.68569 -13.48327 -13.19046 -12.76330 -12.61693 -12.12840 -12.06938 -11.80008 -11.48592 -11.13558 -11.05178 -10.81509 -10.71691 -10.56660 -10.43124 -10.29298 -10.08719 -10.03630 -10.00641 -9.48705 -9.14894 -8.43275 -8.41631 -8.12266 -7.52574 -6.28561 -3.97469 3.45066 3.45890 3.65153 4.27112 4.53333 4.59440 4.90865 5.08832 5.21358 5.25891 5.38522 5.41618 5.48264 5.64239 5.66603 5.76888 5.85988 5.87462 5.90414 6.01439 6.03035 6.07315 6.19153 6.21667 6.25976 6.41818 6.47466 6.48342 6.58077 6.64236 6.70709 6.87962 6.99327 7.10597 7.35723 7.57447 7.59626 7.67078 7.89175 8.01728 8.39983 8.53644 8.98409 9.74610 11.11618 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.009146 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.043793 B = 3060.744394 C = 4421.575035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 1.062 2.938 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.599 4.599 8 H 0.042 0.958 9 C 0.035 3.965 10 H 0.043 0.957 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.113 4.113 14 C 0.069 3.931 15 N -0.543 5.543 16 C 0.076 3.924 17 C -0.119 4.119 18 H 0.085 0.915 19 C -0.148 4.148 20 C 0.044 3.956 21 N -0.681 5.681 22 C 0.064 3.936 23 C 0.077 3.923 24 H 0.272 0.728 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.339 0.661 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -9.711 6.692 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.182 4.182 3 Si 0.891 3.109 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.638 4.638 8 H 0.060 0.940 9 C 0.016 3.984 10 H 0.061 0.939 11 C -0.129 4.129 12 C -0.156 4.156 13 C -0.150 4.150 14 C -0.058 4.058 15 N -0.268 5.268 16 C -0.052 4.052 17 C -0.140 4.140 18 H 0.104 0.896 19 C -0.188 4.188 20 C -0.087 4.087 21 N -0.308 5.308 22 C -0.065 4.065 23 C -0.051 4.051 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.348 -8.201 6.944 10.831 hybrid contribution 2.114 -1.771 -0.470 2.797 sum 3.461 -9.972 6.474 12.383 Atomic orbital electron populations 1.70785 1.06739 1.31208 1.46055 1.25672 0.96532 1.02169 0.93835 0.83650 0.74997 0.75927 0.76349 1.21702 1.21673 1.20871 1.21977 0.94783 0.92146 1.54850 0.93964 1.17762 0.96171 0.92592 0.91880 0.93891 1.20722 0.97438 0.94163 1.00613 1.21422 0.98358 0.95898 0.99885 1.21334 1.00414 0.98763 0.94522 1.22281 0.99025 0.90880 0.93663 1.60920 1.54033 1.10584 1.01235 1.21938 0.97121 0.96631 0.89524 1.22768 0.98162 0.99379 0.93644 0.89627 1.22829 0.99260 1.01189 0.95504 1.22678 0.91135 0.98816 0.96029 1.62734 1.47501 1.07493 1.13026 1.22980 0.94090 0.98907 0.90570 1.22095 0.94002 0.91961 0.96993 0.91593 0.93128 0.94670 0.91587 0.93922 0.92796 0.92729 0.92027 0.96345 0.91826 0.95875 0.91635 0.91835 0.91201 0.92101 0.84606 0.89767 0.90934 0.96236 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.99 13.62 55.43 0.75 -26.23 16 2 C 0.02 0.63 5.44 -17.82 -0.10 0.53 16 3 Si 1.06 25.07 29.91 -169.99 -5.08 19.99 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -16.35 8.04 -34.44 -0.28 -16.63 16 8 H 0.04 1.17 7.83 -52.49 -0.41 0.76 16 9 C 0.04 0.85 1.51 -94.63 -0.14 0.70 16 10 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16 11 C -0.09 -2.06 4.47 -29.31 -0.13 -2.19 16 12 C -0.12 -2.19 5.63 -27.17 -0.15 -2.34 16 13 C -0.11 -1.81 5.28 -27.48 -0.14 -1.96 16 14 C 0.07 1.08 5.35 -2.77 -0.01 1.07 16 15 N -0.54 -9.59 3.85 -234.55 -0.90 -10.49 16 16 C 0.08 1.17 4.11 -3.82 -0.02 1.16 16 17 C -0.12 -1.84 2.98 -88.76 -0.26 -2.11 16 18 H 0.09 1.58 6.56 -51.93 -0.34 1.24 16 19 C -0.15 -1.89 6.51 -25.38 -0.17 -2.05 16 20 C 0.04 0.55 7.52 -2.75 -0.02 0.53 16 21 N -0.68 -10.12 7.51 -110.08 -0.83 -10.95 16 22 C 0.06 1.02 6.87 -1.90 -0.01 1.01 16 23 C 0.08 1.60 4.44 -4.65 -0.02 1.57 16 24 H 0.27 8.05 6.49 -40.82 -0.27 7.79 16 25 H 0.05 1.26 7.98 -51.93 -0.41 0.85 16 26 H 0.03 0.79 7.59 -51.93 -0.39 0.40 16 27 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.92 6.65 -51.93 -0.35 0.58 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.27 8.02 -51.93 -0.42 -0.14 16 33 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.34 5.03 8.92 -39.30 -0.35 4.68 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.13 7.98 -51.93 -0.41 0.72 16 42 H 0.02 0.41 6.78 -51.93 -0.35 0.05 16 43 H 0.06 1.28 5.91 -51.93 -0.31 0.98 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -28.24 320.20 -10.44 -38.68 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.75 Total: 4.89 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.46 Total: -20.71 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.98 Total: -47.67 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.24 -10.44 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260243590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.200 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds