Wall clock time and date at job start Mon Mar 30 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00011 * 2 1 4 4 H 1.48496 * 109.46961 * 93.16692 * 3 2 1 5 5 H 1.48505 * 109.47074 * 213.16500 * 3 2 1 6 6 H 1.48493 * 109.47383 * 333.16498 * 3 2 1 7 7 C 1.37878 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99934 * 354.26684 * 7 2 1 9 9 C 1.50695 * 120.00343 * 174.26394 * 7 2 1 10 10 H 1.09004 * 109.63074 * 32.46920 * 9 7 2 11 11 C 1.54313 * 109.63191 * 272.07788 * 9 7 2 12 12 C 1.45877 * 112.18368 * 161.77604 * 11 9 7 13 13 C 1.54314 * 112.19267 * 61.11333 * 12 11 9 14 14 C 1.50442 * 108.49367 * 281.45747 * 13 12 11 15 15 N 1.47990 * 112.82314 * 93.73239 * 14 13 12 16 16 C 1.46904 * 110.99967 * 191.34450 * 15 14 13 17 17 C 1.52996 * 109.47230 * 284.10620 * 16 15 14 18 18 H 1.09000 * 110.64427 * 57.45380 * 17 16 15 19 19 C 1.54598 * 110.72473 * 294.30281 * 17 16 15 20 20 C 1.53993 * 105.14093 * 219.67954 * 19 17 16 21 21 N 1.47906 * 107.05694 * 358.77840 * 20 19 17 22 22 C 1.48530 * 105.82121 * 25.33053 * 21 20 19 23 23 C 1.48001 * 114.63173 * 318.09142 * 15 14 13 24 24 H 0.97011 * 119.99795 * 359.97438 * 1 2 3 25 25 H 1.09001 * 108.94013 * 282.46687 * 11 9 7 26 26 H 1.08998 * 108.94444 * 41.07909 * 11 9 7 27 27 H 1.08995 * 108.94518 * 181.81587 * 12 11 9 28 28 H 1.09007 * 108.93539 * 300.51228 * 12 11 9 29 29 H 1.08998 * 109.63030 * 41.15580 * 13 12 11 30 30 H 1.08999 * 109.63530 * 161.55199 * 13 12 11 31 31 H 1.09005 * 108.81296 * 214.59628 * 14 13 12 32 32 H 1.09002 * 108.81570 * 332.86671 * 14 13 12 33 33 H 1.08998 * 109.47303 * 44.11260 * 16 15 14 34 34 H 1.09005 * 109.46804 * 164.10918 * 16 15 14 35 35 H 1.08996 * 110.30843 * 338.60144 * 19 17 16 36 36 H 1.09006 * 110.30705 * 100.66787 * 19 17 16 37 37 H 1.09006 * 109.91543 * 118.12869 * 20 19 17 38 38 H 1.08995 * 109.92265 * 239.42479 * 20 19 17 39 39 H 1.00894 * 110.99993 * 264.80823 * 21 20 19 40 40 H 1.09000 * 110.66663 * 202.36374 * 22 21 20 41 41 H 1.08997 * 110.67350 * 79.22678 * 22 21 20 42 42 H 1.09003 * 108.81333 * 197.22230 * 23 15 14 43 43 H 1.08999 * 108.81203 * 78.95472 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5636 2.0077 1.3979 5 1 3.5116 1.4604 -0.7659 6 1 1.4148 2.6711 -0.6320 7 6 2.0045 -1.1940 -0.0005 8 1 1.4686 -2.1271 0.0925 9 6 3.5058 -1.1973 -0.1310 10 1 3.9165 -0.3057 0.3429 11 6 3.8965 -1.2178 -1.6237 12 6 5.2776 -0.7995 -1.8373 13 6 6.2845 -1.7291 -1.1279 14 6 6.3157 -1.3723 0.3333 15 7 5.3918 -2.1955 1.1451 16 6 5.2505 -1.6468 2.5004 17 6 6.4996 -1.9804 3.3185 18 1 7.3934 -1.5900 2.8318 19 6 6.6184 -3.5060 3.5382 20 6 7.1106 -3.6665 4.9885 21 7 7.2876 -2.3054 5.5396 22 6 6.3725 -1.4314 4.7619 23 6 4.0676 -2.4284 0.5264 24 1 -0.4850 0.8402 0.0004 25 1 3.7697 -2.2296 -2.0088 26 1 3.2349 -0.5469 -2.1718 27 1 5.4867 -0.8023 -2.9070 28 1 5.4036 0.2135 -1.4552 29 1 5.9706 -2.7664 -1.2449 30 1 7.2753 -1.5952 -1.5619 31 1 7.3303 -1.5102 0.7072 32 1 6.0420 -0.3231 0.4449 33 1 5.1315 -0.5648 2.4438 34 1 4.3747 -2.0840 2.9799 35 1 5.6463 -3.9830 3.4135 36 1 7.3407 -3.9333 2.8425 37 1 6.3696 -4.2108 5.5740 38 1 8.0617 -4.1988 5.0011 39 1 8.2447 -1.9998 5.4477 40 1 6.7003 -0.3929 4.8086 41 1 5.3484 -1.5293 5.1219 42 1 3.3735 -2.7630 1.2973 43 1 4.1630 -3.2144 -0.2226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260243601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:12 Heat of formation + Delta-G solvation = -28.228027 kcal Electronic energy + Delta-G solvation = -19935.788235 eV Core-core repulsion = 17206.949871 eV Total energy + Delta-G solvation = -2728.838363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57243 -39.24205 -35.73105 -34.86719 -32.93348 -31.56376 -29.98214 -28.36500 -26.79982 -25.24806 -23.92943 -22.55341 -21.26630 -20.96829 -20.05698 -19.16718 -17.65280 -17.00484 -16.47830 -16.27022 -15.90318 -15.18733 -14.87658 -14.74903 -14.62136 -14.53290 -14.36721 -13.67432 -13.55345 -13.23584 -12.99614 -12.88274 -12.48977 -12.43723 -12.32288 -12.15879 -11.90118 -11.82270 -11.58732 -11.48468 -11.41298 -11.23658 -11.04750 -10.93193 -10.66456 -9.56495 -9.01007 -8.32725 -6.34065 1.25479 1.28151 1.38564 2.29396 2.96931 3.02811 3.35101 3.79364 3.86926 3.98316 4.01397 4.15693 4.26668 4.31847 4.45281 4.52314 4.53785 4.59392 4.60679 4.67531 4.72053 4.85186 4.89117 4.90954 5.01715 5.04882 5.12623 5.12939 5.16508 5.26467 5.34243 5.37990 5.44688 5.47445 5.55717 5.64070 5.74379 5.80334 6.12589 6.31695 6.43484 6.51317 6.74965 7.30904 8.84210 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.006749 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.630075 B = 4147.821595 C = 4722.855193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.243 1.243 6 H -0.289 1.289 7 C -0.510 4.510 8 H 0.033 0.967 9 C -0.002 4.002 10 H 0.023 0.977 11 C -0.111 4.111 12 C -0.117 4.117 13 C -0.110 4.110 14 C 0.064 3.936 15 N -0.542 5.542 16 C 0.072 3.928 17 C -0.105 4.105 18 H 0.080 0.920 19 C -0.126 4.126 20 C 0.041 3.959 21 N -0.681 5.681 22 C 0.047 3.953 23 C 0.085 3.915 24 H 0.264 0.736 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.345 0.655 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.977 -3.144 4.415 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.167 1.167 6 H -0.215 1.215 7 C -0.548 4.548 8 H 0.051 0.949 9 C -0.022 4.022 10 H 0.041 0.959 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.148 4.148 14 C -0.063 4.063 15 N -0.266 5.266 16 C -0.057 4.057 17 C -0.125 4.125 18 H 0.099 0.901 19 C -0.165 4.165 20 C -0.088 4.088 21 N -0.308 5.308 22 C -0.084 4.084 23 C -0.042 4.042 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.630 -3.564 5.063 19.632 hybrid contribution -0.809 1.701 -1.089 2.176 sum 17.821 -1.862 3.974 18.354 Atomic orbital electron populations 1.70060 1.08138 1.27824 1.52950 1.25826 0.95269 1.02611 0.94432 0.85967 0.79894 0.79449 0.79032 1.19803 1.16667 1.21517 1.21302 0.91847 0.92868 1.48813 0.94911 1.19322 0.93675 0.95802 0.93420 0.95895 1.20739 0.95861 1.00198 0.98100 1.20665 0.95076 0.98854 1.00900 1.21375 0.99603 0.99932 0.93856 1.21843 0.96543 0.93996 0.93917 1.62031 1.12200 1.49962 1.02387 1.22024 0.97811 0.96462 0.89422 1.22628 0.97474 0.96611 0.95825 0.90125 1.22590 1.01681 0.95247 0.96999 1.22780 1.01689 0.91269 0.93086 1.62708 1.10917 1.02690 1.54478 1.23107 0.98092 0.97191 0.89971 1.21793 0.87648 0.96938 0.97835 0.92700 0.93132 0.95420 0.91262 0.93918 0.91180 0.88862 0.89671 0.96712 0.96328 0.92446 0.92613 0.90994 0.91480 0.90050 0.83880 0.89947 0.91441 0.93631 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.50 16 2 C 0.02 0.91 5.47 84.66 0.46 1.37 16 3 Si 0.93 44.83 26.60 68.60 1.82 46.66 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.24 -10.84 6.50 99.48 0.65 -10.19 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.51 -28.90 8.52 25.60 0.22 -28.68 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.00 -0.09 1.28 -11.92 -0.02 -0.10 16 10 H 0.02 1.07 4.58 -2.39 -0.01 1.05 16 11 C -0.11 -4.50 4.29 28.86 0.12 -4.37 16 12 C -0.12 -3.75 5.30 28.86 0.15 -3.60 16 13 C -0.11 -2.92 5.63 30.21 0.17 -2.75 16 14 C 0.06 1.81 4.71 85.27 0.40 2.21 16 15 N -0.54 -17.35 4.40 -900.27 -3.96 -21.31 16 16 C 0.07 2.21 4.29 86.30 0.37 2.58 16 17 C -0.10 -2.44 3.10 -9.59 -0.03 -2.47 16 18 H 0.08 1.74 7.15 -2.39 -0.02 1.72 16 19 C -0.13 -2.77 6.31 31.47 0.20 -2.57 16 20 C 0.04 0.79 7.52 86.44 0.65 1.44 16 21 N -0.68 -13.48 7.51 -502.19 -3.77 -17.25 16 22 C 0.05 1.03 6.99 86.65 0.61 1.63 16 23 C 0.09 3.37 4.72 85.27 0.40 3.77 16 24 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 25 H 0.05 1.99 7.52 -2.39 -0.02 1.97 16 26 H 0.03 1.23 7.67 -2.39 -0.02 1.21 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.04 1.43 7.39 -2.38 -0.02 1.42 16 29 H 0.07 1.94 7.08 -2.39 -0.02 1.93 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 1.98 7.26 -2.38 -0.02 1.96 16 32 H 0.01 0.47 6.25 -2.39 -0.01 0.45 16 33 H 0.02 0.62 7.77 -2.39 -0.02 0.60 16 34 H 0.06 1.96 7.39 -2.38 -0.02 1.94 16 35 H 0.06 1.43 7.81 -2.39 -0.02 1.41 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.35 5.47 8.92 -89.70 -0.80 4.67 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.69 8.05 -2.39 -0.02 1.67 16 42 H 0.05 1.97 6.99 -2.39 -0.02 1.96 16 43 H 0.06 2.40 6.59 -2.39 -0.02 2.38 16 Total: -1.00 -63.80 314.95 -1.79 -65.59 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.11 Total: 17.36 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.71 Total: -31.54 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -7.43 Total: -98.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.82 Total: 46.66 kcal Total: -63.80 -1.79 -65.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260243601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.361 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds