Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00540 * 2 1 4 4 H 1.48493 * 109.47332 * 270.00421 * 3 2 1 5 5 H 1.48496 * 109.46967 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.47014 * 150.00142 * 3 2 1 7 7 C 1.37887 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47589 * 175.14079 * 9 7 2 11 11 H 1.09000 * 109.45875 * 303.19601 * 10 9 7 12 12 C 1.53042 * 109.45886 * 63.16641 * 10 9 7 13 13 C 1.53121 * 109.27682 * 179.19659 * 12 10 9 14 14 C 1.53116 * 109.16095 * 302.34731 * 13 12 10 15 15 C 1.53041 * 109.27896 * 57.65450 * 14 13 12 16 16 N 1.46840 * 109.46597 * 183.22084 * 10 9 7 17 17 C 1.46900 * 110.99894 * 54.14676 * 16 10 9 18 18 C 1.53004 * 109.47044 * 176.28891 * 17 16 10 19 19 H 1.09000 * 110.64873 * 304.29315 * 18 17 16 20 20 C 1.54595 * 110.72527 * 181.13778 * 18 17 16 21 21 C 1.53987 * 105.14252 * 219.68800 * 20 18 17 22 22 N 1.47896 * 107.05880 * 358.77539 * 21 20 18 23 23 C 1.48732 * 105.94284 * 25.20466 * 22 21 20 24 24 H 0.97004 * 119.99331 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47348 * 295.14786 * 9 7 2 26 26 H 1.09006 * 109.47127 * 55.13984 * 9 7 2 27 27 H 1.09000 * 109.50378 * 299.13825 * 12 10 9 28 28 H 1.09000 * 109.50263 * 59.25722 * 12 10 9 29 29 H 1.08998 * 109.52219 * 62.25409 * 13 12 10 30 30 H 1.08998 * 109.52081 * 182.37622 * 13 12 10 31 31 H 1.09001 * 109.50355 * 177.59674 * 14 13 12 32 32 H 1.08997 * 109.50530 * 297.71502 * 14 13 12 33 33 H 1.09004 * 109.46143 * 60.83805 * 15 14 13 34 34 H 1.08996 * 109.46099 * 180.81349 * 15 14 13 35 35 H 1.09000 * 109.47337 * 296.28871 * 17 16 10 36 36 H 1.08996 * 109.47285 * 56.29500 * 17 16 10 37 37 H 1.09008 * 110.30746 * 338.60823 * 20 18 17 38 38 H 1.09005 * 110.30940 * 100.76947 * 20 18 17 39 39 H 1.09006 * 109.91808 * 118.12870 * 21 20 18 40 40 H 1.08995 * 109.91912 * 239.41815 * 21 20 18 41 41 H 1.00902 * 111.00541 * 264.81576 * 22 21 20 42 42 H 1.09004 * 110.83768 * 202.57982 * 23 22 21 43 43 H 1.08994 * 110.58434 * 79.38529 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2405 -3.6596 -0.1234 11 1 2.8390 -3.5325 -1.0254 12 6 3.1596 -3.6775 1.1002 13 6 4.1348 -4.8521 0.9827 14 6 3.3399 -6.1545 0.8546 15 6 2.4155 -6.0647 -0.3618 16 7 1.5019 -4.9264 -0.2009 17 6 0.5089 -4.8914 -1.2829 18 6 -0.1742 -6.2561 -1.3925 19 1 0.5642 -7.0453 -1.5340 20 6 -1.2067 -6.2602 -2.5431 21 6 -2.4059 -7.0623 -2.0046 22 7 -2.0514 -7.5091 -0.6400 23 6 -1.0431 -6.5363 -0.1406 24 1 -0.4849 0.8401 0.0004 25 1 0.6914 -2.5957 0.9299 26 1 0.5602 -2.5199 -0.8436 27 1 3.7192 -2.7434 1.1486 28 1 2.5606 -3.7909 2.0037 29 1 4.7606 -4.7191 0.1002 30 1 4.7635 -4.8939 1.8721 31 1 4.0282 -6.9900 0.7278 32 1 2.7436 -6.3068 1.7543 33 1 3.0132 -5.9262 -1.2627 34 1 1.8375 -6.9849 -0.4473 35 1 -0.2380 -4.1277 -1.0661 36 1 1.0055 -4.6571 -2.2244 37 1 -1.5102 -5.2411 -2.7828 38 1 -0.7897 -6.7486 -3.4238 39 1 -3.2914 -6.4276 -1.9692 40 1 -2.5907 -7.9268 -2.6421 41 1 -1.6724 -8.4441 -0.6526 42 1 -0.4412 -6.9757 0.6549 43 1 -1.5290 -5.6231 0.2028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260316217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = -13.057191 kcal Electronic energy + Delta-G solvation = -19722.513072 eV Core-core repulsion = 16994.332565 eV Total energy + Delta-G solvation = -2728.180506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35345 -37.82368 -33.48286 -33.36094 -31.20153 -29.98079 -28.70900 -27.09635 -24.95109 -23.57956 -22.45098 -21.40417 -20.35011 -19.52985 -18.86343 -16.70324 -16.39619 -15.41286 -14.66651 -14.65110 -14.31798 -13.92084 -13.69978 -13.56664 -13.33196 -12.89304 -12.71824 -12.08737 -12.05233 -11.65357 -11.49271 -11.27268 -11.13200 -10.90439 -10.83892 -10.74945 -10.69540 -10.50621 -10.29807 -10.18959 -9.78469 -9.69531 -9.08058 -8.95291 -8.56163 -8.32031 -7.62843 -5.98882 -4.00225 3.31894 3.38622 3.41381 4.28080 4.40358 4.52237 4.82417 4.98114 5.13080 5.24828 5.28521 5.32995 5.36726 5.47694 5.58559 5.68198 5.76832 5.81301 5.87311 5.94112 5.98027 6.05248 6.09656 6.19326 6.21293 6.28144 6.36308 6.42109 6.45892 6.50373 6.59773 6.80223 6.82399 6.96836 7.14465 7.40454 7.58724 7.64909 7.84488 7.89192 8.09518 8.45735 9.05933 9.62980 11.12469 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.006405 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.117887 B = 4370.213379 C = 5503.130045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.030 3.970 10 C 0.092 3.908 11 H 0.025 0.975 12 C -0.100 4.100 13 C -0.123 4.123 14 C -0.113 4.113 15 C 0.052 3.948 16 N -0.531 5.531 17 C 0.069 3.931 18 C -0.124 4.124 19 H 0.071 0.929 20 C -0.149 4.149 21 C 0.044 3.956 22 N -0.680 5.680 23 C 0.060 3.940 24 H 0.260 0.740 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.330 0.670 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -14.536 -2.442 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.015 4.015 11 H 0.043 0.957 12 C -0.138 4.138 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.077 4.077 16 N -0.256 5.256 17 C -0.059 4.059 18 C -0.144 4.144 19 H 0.090 0.910 20 C -0.189 4.189 21 C -0.086 4.086 22 N -0.306 5.306 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.386 -14.208 -1.632 14.307 hybrid contribution 1.786 0.895 -1.469 2.479 sum 2.172 -13.313 -3.100 13.840 Atomic orbital electron populations 1.69967 1.05976 1.26495 1.50820 1.24985 0.94802 0.99082 0.95438 0.86638 0.79896 0.83722 0.78006 1.20814 1.21251 1.19900 1.21207 0.92925 0.90891 1.50523 0.92676 1.19193 0.93671 0.90110 0.97727 1.21808 0.95153 0.88639 0.95863 0.95728 1.21534 0.96535 0.97062 0.98670 1.21653 0.98024 0.95768 1.00655 1.21545 0.97561 0.97167 0.98781 1.22115 0.94156 0.94954 0.96441 1.62033 1.15744 1.03532 1.44276 1.22077 0.95591 0.95933 0.92321 1.22860 0.97229 0.98423 0.95912 0.91040 1.22833 0.96215 1.01732 0.98099 1.22699 0.98079 0.98657 0.89190 1.62842 1.41686 1.05495 1.20597 1.23105 0.91133 0.96711 0.95934 0.93061 0.96048 0.96046 0.90921 0.91845 0.93036 0.92718 0.92746 0.91426 0.96077 0.91436 0.89184 0.95680 0.90717 0.91951 0.90681 0.92171 0.85560 0.90587 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.30 8.49 -34.44 -0.29 -14.59 16 8 H 0.06 1.49 6.76 -52.49 -0.35 1.13 16 9 C 0.03 0.77 4.15 -27.89 -0.12 0.65 16 10 C 0.09 1.92 1.89 -67.72 -0.13 1.79 16 11 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 12 C -0.10 -1.91 5.14 -26.65 -0.14 -2.04 16 13 C -0.12 -1.89 6.00 -26.61 -0.16 -2.05 16 14 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 15 C 0.05 0.77 5.06 -3.83 -0.02 0.75 16 16 N -0.53 -9.39 4.43 -226.69 -1.00 -10.39 16 17 C 0.07 1.17 3.76 -3.82 -0.01 1.16 16 18 C -0.12 -1.67 2.58 -88.76 -0.23 -1.90 16 19 H 0.07 0.91 6.02 -51.93 -0.31 0.60 16 20 C -0.15 -1.82 6.51 -25.38 -0.17 -1.99 16 21 C 0.04 0.50 7.52 -2.76 -0.02 0.48 16 22 N -0.68 -8.35 7.52 -109.94 -0.83 -9.18 16 23 C 0.06 0.83 6.85 -1.78 -0.01 0.81 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 6.22 -51.93 -0.32 0.25 16 27 H 0.07 1.48 6.76 -51.93 -0.35 1.13 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.89 5.76 -51.93 -0.30 0.60 16 35 H 0.09 1.76 6.31 -51.93 -0.33 1.44 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.99 7.85 -51.92 -0.41 0.58 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.33 3.44 8.91 -39.29 -0.35 3.09 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -28.79 322.35 -10.58 -39.37 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.77 Total: 1.77 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.55 Total: -17.10 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -1.09 Total: -45.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.79 -10.58 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.317 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds