Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00540 * 2 1 4 4 H 1.48493 * 109.47332 * 270.00421 * 3 2 1 5 5 H 1.48496 * 109.46967 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.47014 * 150.00142 * 3 2 1 7 7 C 1.37887 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47589 * 175.14079 * 9 7 2 11 11 H 1.09000 * 109.45875 * 303.19601 * 10 9 7 12 12 C 1.53042 * 109.45886 * 63.16641 * 10 9 7 13 13 C 1.53121 * 109.27682 * 179.19659 * 12 10 9 14 14 C 1.53116 * 109.16095 * 302.34731 * 13 12 10 15 15 C 1.53041 * 109.27896 * 57.65450 * 14 13 12 16 16 N 1.46840 * 109.46597 * 183.22084 * 10 9 7 17 17 C 1.46900 * 110.99894 * 54.14676 * 16 10 9 18 18 C 1.53004 * 109.47044 * 176.28891 * 17 16 10 19 19 H 1.09000 * 110.64873 * 304.29315 * 18 17 16 20 20 C 1.54595 * 110.72527 * 181.13778 * 18 17 16 21 21 C 1.53987 * 105.14252 * 219.68800 * 20 18 17 22 22 N 1.47896 * 107.05880 * 358.77539 * 21 20 18 23 23 C 1.48732 * 105.94284 * 25.20466 * 22 21 20 24 24 H 0.97004 * 119.99331 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47348 * 295.14786 * 9 7 2 26 26 H 1.09006 * 109.47127 * 55.13984 * 9 7 2 27 27 H 1.09000 * 109.50378 * 299.13825 * 12 10 9 28 28 H 1.09000 * 109.50263 * 59.25722 * 12 10 9 29 29 H 1.08998 * 109.52219 * 62.25409 * 13 12 10 30 30 H 1.08998 * 109.52081 * 182.37622 * 13 12 10 31 31 H 1.09001 * 109.50355 * 177.59674 * 14 13 12 32 32 H 1.08997 * 109.50530 * 297.71502 * 14 13 12 33 33 H 1.09004 * 109.46143 * 60.83805 * 15 14 13 34 34 H 1.08996 * 109.46099 * 180.81349 * 15 14 13 35 35 H 1.09000 * 109.47337 * 296.28871 * 17 16 10 36 36 H 1.08996 * 109.47285 * 56.29500 * 17 16 10 37 37 H 1.09008 * 110.30746 * 338.60823 * 20 18 17 38 38 H 1.09005 * 110.30940 * 100.76947 * 20 18 17 39 39 H 1.09006 * 109.91808 * 118.12870 * 21 20 18 40 40 H 1.08995 * 109.91912 * 239.41815 * 21 20 18 41 41 H 1.00902 * 111.00541 * 264.81576 * 22 21 20 42 42 H 1.09004 * 110.83768 * 202.57982 * 23 22 21 43 43 H 1.08994 * 110.58434 * 79.38529 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2405 -3.6596 -0.1234 11 1 2.8390 -3.5325 -1.0254 12 6 3.1596 -3.6775 1.1002 13 6 4.1348 -4.8521 0.9827 14 6 3.3399 -6.1545 0.8546 15 6 2.4155 -6.0647 -0.3618 16 7 1.5019 -4.9264 -0.2009 17 6 0.5089 -4.8914 -1.2829 18 6 -0.1742 -6.2561 -1.3925 19 1 0.5642 -7.0453 -1.5340 20 6 -1.2067 -6.2602 -2.5431 21 6 -2.4059 -7.0623 -2.0046 22 7 -2.0514 -7.5091 -0.6400 23 6 -1.0431 -6.5363 -0.1406 24 1 -0.4849 0.8401 0.0004 25 1 0.6914 -2.5957 0.9299 26 1 0.5602 -2.5199 -0.8436 27 1 3.7192 -2.7434 1.1486 28 1 2.5606 -3.7909 2.0037 29 1 4.7606 -4.7191 0.1002 30 1 4.7635 -4.8939 1.8721 31 1 4.0282 -6.9900 0.7278 32 1 2.7436 -6.3068 1.7543 33 1 3.0132 -5.9262 -1.2627 34 1 1.8375 -6.9849 -0.4473 35 1 -0.2380 -4.1277 -1.0661 36 1 1.0055 -4.6571 -2.2244 37 1 -1.5102 -5.2411 -2.7828 38 1 -0.7897 -6.7486 -3.4238 39 1 -3.2914 -6.4276 -1.9692 40 1 -2.5907 -7.9268 -2.6421 41 1 -1.6724 -8.4441 -0.6526 42 1 -0.4412 -6.9757 0.6549 43 1 -1.5290 -5.6231 0.2028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260316217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = -32.468448 kcal Electronic energy + Delta-G solvation = -19723.354807 eV Core-core repulsion = 16994.332565 eV Total energy + Delta-G solvation = -2729.022242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67768 -39.03640 -35.38893 -34.75532 -32.99164 -31.14325 -29.78488 -28.92364 -26.30614 -25.45341 -23.78349 -22.51011 -21.85784 -20.75558 -20.32437 -18.56334 -17.74877 -16.78484 -16.42264 -16.02186 -15.79612 -15.29889 -15.07393 -14.61837 -14.57417 -14.39637 -14.05237 -14.02116 -13.45685 -13.15127 -13.04550 -12.79323 -12.54068 -12.53407 -12.33585 -12.04109 -11.93816 -11.90079 -11.72928 -11.61566 -11.46490 -11.24838 -10.83463 -10.75560 -10.49780 -9.57570 -9.10048 -8.19257 -6.28913 1.38267 1.39428 1.50440 2.39512 2.99983 3.14257 3.35951 3.72147 3.87007 3.99682 4.02862 4.11981 4.14989 4.27612 4.40269 4.45016 4.52371 4.60107 4.64562 4.71413 4.75122 4.78215 4.90088 4.92568 5.00278 5.04369 5.11282 5.14980 5.16249 5.19583 5.30437 5.38395 5.44026 5.46550 5.56045 5.71489 5.78684 5.80104 6.13517 6.39350 6.41878 6.54740 6.87177 7.39273 8.92790 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.006405 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.117887 B = 4370.213379 C = 5503.130045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.042 3.958 10 C 0.103 3.897 11 H 0.011 0.989 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.050 3.950 16 N -0.536 5.536 17 C 0.075 3.925 18 C -0.112 4.112 19 H 0.093 0.907 20 C -0.147 4.147 21 C 0.046 3.954 22 N -0.684 5.684 23 C 0.066 3.934 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.007 1.007 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.346 0.654 42 H 0.082 0.918 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -16.572 -2.705 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.005 4.005 11 H 0.029 0.971 12 C -0.135 4.135 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.078 4.078 16 N -0.260 5.260 17 C -0.054 4.054 18 C -0.132 4.132 19 H 0.111 0.889 20 C -0.187 4.187 21 C -0.084 4.084 22 N -0.311 5.311 23 C -0.064 4.064 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.012 0.988 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.101 0.899 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.035 -16.272 -1.897 16.509 hybrid contribution 1.216 1.519 -1.392 2.393 sum 3.252 -14.753 -3.289 15.461 Atomic orbital electron populations 1.70115 1.07761 1.27552 1.51811 1.25927 0.95685 1.03138 0.94923 0.85502 0.78778 0.78742 0.78375 1.19963 1.20847 1.18646 1.21595 0.93345 0.92009 1.50159 0.92186 1.18986 0.93854 0.92065 0.94663 1.21496 0.94064 0.88682 0.96228 0.97097 1.21448 0.96736 0.98360 0.96976 1.21605 0.97327 0.94611 1.01877 1.21563 0.97680 0.97338 0.98026 1.22278 0.94141 0.94180 0.97175 1.61982 1.16228 1.03140 1.44690 1.21949 0.94695 0.97286 0.91445 1.22776 0.97591 0.96355 0.96516 0.88895 1.22833 0.96317 1.01137 0.98418 1.22707 0.97101 0.99446 0.89127 1.62745 1.41198 1.05986 1.21168 1.22910 0.91322 0.95924 0.96237 0.92939 0.99435 0.98849 0.92814 0.93040 0.92677 0.90577 0.89251 0.91512 0.96063 0.88946 0.93192 0.96766 0.92713 0.89847 0.91740 0.89307 0.83769 0.89949 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.53 -30.60 8.49 25.60 0.22 -30.38 16 8 H 0.06 3.31 6.76 -2.91 -0.02 3.29 16 9 C 0.04 2.26 4.15 29.84 0.12 2.38 16 10 C 0.10 4.44 1.89 44.94 0.09 4.53 16 11 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 12 C -0.10 -3.73 5.14 30.65 0.16 -3.57 16 13 C -0.12 -3.31 6.00 30.67 0.18 -3.13 16 14 C -0.11 -2.65 6.09 30.65 0.19 -2.46 16 15 C 0.05 1.36 5.06 86.33 0.44 1.80 16 16 N -0.54 -19.18 4.43 -871.12 -3.86 -23.04 16 17 C 0.07 2.65 3.76 86.30 0.32 2.97 16 18 C -0.11 -2.93 2.58 -9.59 -0.02 -2.96 16 19 H 0.09 2.08 6.02 -2.39 -0.01 2.07 16 20 C -0.15 -3.47 6.51 31.47 0.20 -3.27 16 21 C 0.05 0.97 7.52 86.44 0.65 1.62 16 22 N -0.68 -15.64 7.52 -501.73 -3.77 -19.41 16 23 C 0.07 1.78 6.85 86.61 0.59 2.37 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 26 H -0.01 -0.40 6.22 -2.38 -0.01 -0.42 16 27 H 0.05 2.22 6.76 -2.39 -0.02 2.21 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.09 2.10 5.76 -2.39 -0.01 2.09 16 35 H 0.05 2.15 6.31 -2.39 -0.02 2.14 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 1.50 7.85 -2.38 -0.02 1.48 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.35 6.17 8.91 -89.69 -0.80 5.38 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.05 1.77 8.00 -2.39 -0.02 1.75 16 Total: -1.00 -65.35 322.35 -1.55 -66.91 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.17 Total: 15.63 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.60 Total: -29.59 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -7.35 Total: -99.90 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.35 -1.55 -66.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds