Wall clock time and date at job start Mon Mar 30 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48499 * 109.47262 * 270.00163 * 3 2 1 5 5 H 1.48494 * 109.47357 * 30.00380 * 3 2 1 6 6 H 1.48502 * 109.46989 * 150.00437 * 3 2 1 7 7 C 1.37877 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00573 * 179.71693 * 7 2 1 9 9 C 1.50706 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46862 * 174.75137 * 9 7 2 11 11 H 1.09002 * 109.46001 * 184.58547 * 10 9 7 12 12 C 1.53045 * 109.46157 * 64.61020 * 10 9 7 13 13 C 1.53120 * 109.27676 * 180.80180 * 12 10 9 14 14 C 1.53123 * 109.16128 * 57.65719 * 13 12 10 15 15 C 1.53040 * 109.27353 * 302.34346 * 14 13 12 16 16 N 1.46843 * 109.51854 * 59.18481 * 15 14 13 17 17 C 1.46897 * 110.99384 * 174.14590 * 16 15 14 18 18 C 1.53003 * 109.47486 * 283.68902 * 17 16 15 19 19 H 1.09002 * 110.63774 * 310.14794 * 18 17 16 20 20 C 1.54593 * 110.72432 * 186.99485 * 18 17 16 21 21 C 1.53992 * 105.13641 * 219.68107 * 20 18 17 22 22 N 1.47900 * 107.05856 * 358.77792 * 21 20 18 23 23 C 1.48527 * 105.82175 * 25.32777 * 22 21 20 24 24 H 0.97005 * 119.99416 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46810 * 294.74931 * 9 7 2 26 26 H 1.09000 * 109.47116 * 54.75725 * 9 7 2 27 27 H 1.08998 * 109.49998 * 300.74593 * 12 10 9 28 28 H 1.08996 * 109.50044 * 60.82171 * 12 10 9 29 29 H 1.09004 * 109.52022 * 177.56029 * 13 12 10 30 30 H 1.08996 * 109.52366 * 297.68245 * 13 12 10 31 31 H 1.08994 * 109.49988 * 62.27890 * 14 13 12 32 32 H 1.08995 * 109.49990 * 182.36156 * 14 13 12 33 33 H 1.09004 * 109.45776 * 179.19666 * 15 14 13 34 34 H 1.09002 * 109.46109 * 299.17276 * 15 14 13 35 35 H 1.08997 * 109.47064 * 43.68876 * 17 16 15 36 36 H 1.09003 * 109.47114 * 163.68728 * 17 16 15 37 37 H 1.08992 * 110.30972 * 338.59758 * 20 18 17 38 38 H 1.09006 * 110.30811 * 100.66779 * 20 18 17 39 39 H 1.09004 * 109.91349 * 118.13179 * 21 20 18 40 40 H 1.09004 * 109.91968 * 239.22276 * 21 20 18 41 41 H 1.00898 * 110.99496 * 264.80912 * 22 21 20 42 42 H 1.09003 * 110.66847 * 202.36017 * 23 22 21 43 43 H 1.08998 * 110.66495 * 79.22947 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0052 9 6 1.2509 -2.4992 -0.0005 10 6 2.2398 -3.6591 -0.1331 11 1 1.6906 -4.5970 -0.2150 12 6 3.1427 -3.7031 1.1018 13 6 4.1436 -4.8526 0.9556 14 6 4.9532 -4.6538 -0.3288 15 6 3.9978 -4.5823 -1.5222 16 7 3.0615 -3.4667 -1.3349 17 6 2.2194 -3.2810 -2.5241 18 6 3.0326 -2.5930 -3.6226 19 1 3.5343 -1.7077 -3.2318 20 6 2.1300 -2.2256 -4.8227 21 6 2.9791 -2.5270 -6.0715 22 7 4.2949 -3.0066 -5.5961 23 6 4.0544 -3.5768 -4.2459 24 1 -0.4849 0.8401 0.0004 25 1 0.6970 -2.5988 0.9329 26 1 0.5554 -2.5171 -0.8396 27 1 3.6820 -2.7602 1.1920 28 1 2.5340 -3.8607 1.9921 29 1 4.8167 -4.8608 1.8129 30 1 3.6060 -5.7995 0.9056 31 1 5.5209 -3.7259 -0.2610 32 1 5.6385 -5.4911 -0.4601 33 1 4.5701 -4.4265 -2.4367 34 1 3.4400 -5.5158 -1.5974 35 1 1.8753 -4.2517 -2.8808 36 1 1.3594 -2.6625 -2.2674 37 1 1.2293 -2.8393 -4.8205 38 1 1.8669 -1.1683 -4.7884 39 1 2.4968 -3.2991 -6.6709 40 1 3.1029 -1.6205 -6.6640 41 1 4.9623 -2.2509 -5.5560 42 1 4.9767 -3.5927 -3.6651 43 1 3.6287 -4.5773 -4.3210 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260316222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:19 Heat of formation + Delta-G solvation = -3.046431 kcal Electronic energy + Delta-G solvation = -20173.371879 eV Core-core repulsion = 17445.625472 eV Total energy + Delta-G solvation = -2727.746407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29202 -37.73688 -33.50840 -33.06786 -31.13409 -29.98384 -28.56538 -26.95865 -25.11122 -23.52342 -21.89667 -21.57568 -20.28982 -19.52596 -18.85618 -16.73331 -16.11047 -15.07549 -14.74994 -14.55010 -14.31518 -13.92612 -13.66988 -13.49627 -13.18700 -12.85904 -12.53336 -12.19196 -11.88921 -11.48355 -11.28372 -11.13835 -11.05416 -10.86347 -10.78933 -10.65250 -10.52726 -10.29907 -10.22079 -10.06241 -9.94123 -9.47449 -9.04380 -8.89149 -8.47713 -8.25028 -7.41345 -5.90201 -3.87042 3.36286 3.43172 3.47053 4.35887 4.53621 4.60081 5.03871 5.11658 5.27820 5.33868 5.36256 5.43704 5.47471 5.57531 5.71613 5.77487 5.81819 5.91129 6.00243 6.01400 6.10886 6.13903 6.16691 6.21401 6.28463 6.33138 6.43338 6.46702 6.52992 6.65770 6.74757 6.80850 6.90602 6.96574 7.18312 7.43705 7.58064 7.68258 7.98322 8.04691 8.13685 8.58238 9.19752 9.74501 11.21846 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.009591 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.946107 B = 2918.802477 C = 4237.018577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.050 3.950 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.480 4.480 8 H 0.065 0.935 9 C 0.022 3.978 10 C 0.095 3.905 11 H 0.009 0.991 12 C -0.103 4.103 13 C -0.122 4.122 14 C -0.113 4.113 15 C 0.037 3.963 16 N -0.509 5.509 17 C 0.068 3.932 18 C -0.109 4.109 19 H 0.087 0.913 20 C -0.148 4.148 21 C 0.042 3.958 22 N -0.681 5.681 23 C 0.043 3.957 24 H 0.256 0.744 25 H 0.016 0.984 26 H 0.021 0.979 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.334 0.666 42 H 0.079 0.921 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -7.752 -6.296 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.149 4.149 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.519 4.519 8 H 0.083 0.917 9 C -0.015 4.015 10 C -0.013 4.013 11 H 0.026 0.974 12 C -0.141 4.141 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.091 4.091 16 N -0.233 5.233 17 C -0.060 4.060 18 C -0.129 4.129 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.087 4.087 22 N -0.307 5.307 23 C -0.085 4.085 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.340 -7.855 -6.612 12.621 hybrid contribution -0.338 1.064 0.466 1.210 sum 7.002 -6.790 -6.146 11.529 Atomic orbital electron populations 1.69967 1.05947 1.26137 1.52489 1.25006 0.94699 0.98950 0.96265 0.86681 0.79879 0.84090 0.77817 1.21081 1.21721 1.20037 1.21134 0.93374 0.89719 1.47666 0.91671 1.19321 0.93155 0.92138 0.96898 1.21701 0.93512 0.97263 0.88821 0.97360 1.21551 0.96983 0.98540 0.97007 1.21633 0.98282 0.98881 0.97139 1.21530 0.97476 1.01178 0.94880 1.22497 0.95588 0.92218 0.98776 1.61738 1.19082 1.39999 1.02521 1.22080 0.96716 0.97895 0.89328 1.22645 0.96413 0.99394 0.94485 0.89472 1.22792 0.99246 1.02068 0.94633 1.22701 0.89865 0.99192 0.96981 1.62809 1.09064 1.34620 1.24228 1.23470 0.98970 0.98322 0.87786 0.93406 0.96621 0.96073 0.90170 0.92634 0.92839 0.93311 0.91352 0.92840 0.90194 0.96459 0.96541 0.88270 0.91418 0.91263 0.91169 0.92044 0.85100 0.90240 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.48 -12.85 7.83 -34.44 -0.27 -13.12 16 8 H 0.07 1.76 6.72 -52.49 -0.35 1.40 16 9 C 0.02 0.54 4.18 -27.88 -0.12 0.42 16 10 C 0.09 1.93 2.10 -67.72 -0.14 1.79 16 11 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 12 C -0.10 -1.92 5.19 -26.65 -0.14 -2.06 16 13 C -0.12 -1.85 6.00 -26.61 -0.16 -2.01 16 14 C -0.11 -1.64 6.09 -26.65 -0.16 -1.81 16 15 C 0.04 0.58 5.11 -3.83 -0.02 0.56 16 16 N -0.51 -9.52 3.78 -226.68 -0.86 -10.38 16 17 C 0.07 1.24 4.29 -3.82 -0.02 1.23 16 18 C -0.11 -1.75 3.25 -88.76 -0.29 -2.04 16 19 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 20 C -0.15 -2.16 6.51 -25.38 -0.17 -2.32 16 21 C 0.04 0.54 7.51 -2.76 -0.02 0.52 16 22 N -0.68 -8.85 7.51 -110.09 -0.83 -9.68 16 23 C 0.04 0.60 5.13 -1.90 -0.01 0.59 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.56 6.18 -51.93 -0.32 0.24 16 27 H 0.08 1.66 6.80 -51.93 -0.35 1.30 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.14 3.84 -51.93 -0.20 0.94 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.02 0.29 7.80 -51.93 -0.40 -0.12 16 36 H 0.10 2.16 5.28 -51.93 -0.27 1.88 16 37 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.33 3.97 8.92 -39.29 -0.35 3.62 16 42 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 43 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -28.30 317.66 -10.39 -38.69 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.61 Total: 2.76 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.61 Total: -16.96 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.95 Total: -45.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.30 -10.39 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.649 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds