Wall clock time and date at job start Mon Mar 30 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48499 * 109.47262 * 270.00163 * 3 2 1 5 5 H 1.48494 * 109.47357 * 30.00380 * 3 2 1 6 6 H 1.48502 * 109.46989 * 150.00437 * 3 2 1 7 7 C 1.37877 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00573 * 179.71693 * 7 2 1 9 9 C 1.50706 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46862 * 174.75137 * 9 7 2 11 11 H 1.09002 * 109.46001 * 184.58547 * 10 9 7 12 12 C 1.53045 * 109.46157 * 64.61020 * 10 9 7 13 13 C 1.53120 * 109.27676 * 180.80180 * 12 10 9 14 14 C 1.53123 * 109.16128 * 57.65719 * 13 12 10 15 15 C 1.53040 * 109.27353 * 302.34346 * 14 13 12 16 16 N 1.46843 * 109.51854 * 59.18481 * 15 14 13 17 17 C 1.46897 * 110.99384 * 174.14590 * 16 15 14 18 18 C 1.53003 * 109.47486 * 283.68902 * 17 16 15 19 19 H 1.09002 * 110.63774 * 310.14794 * 18 17 16 20 20 C 1.54593 * 110.72432 * 186.99485 * 18 17 16 21 21 C 1.53992 * 105.13641 * 219.68107 * 20 18 17 22 22 N 1.47900 * 107.05856 * 358.77792 * 21 20 18 23 23 C 1.48527 * 105.82175 * 25.32777 * 22 21 20 24 24 H 0.97005 * 119.99416 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46810 * 294.74931 * 9 7 2 26 26 H 1.09000 * 109.47116 * 54.75725 * 9 7 2 27 27 H 1.08998 * 109.49998 * 300.74593 * 12 10 9 28 28 H 1.08996 * 109.50044 * 60.82171 * 12 10 9 29 29 H 1.09004 * 109.52022 * 177.56029 * 13 12 10 30 30 H 1.08996 * 109.52366 * 297.68245 * 13 12 10 31 31 H 1.08994 * 109.49988 * 62.27890 * 14 13 12 32 32 H 1.08995 * 109.49990 * 182.36156 * 14 13 12 33 33 H 1.09004 * 109.45776 * 179.19666 * 15 14 13 34 34 H 1.09002 * 109.46109 * 299.17276 * 15 14 13 35 35 H 1.08997 * 109.47064 * 43.68876 * 17 16 15 36 36 H 1.09003 * 109.47114 * 163.68728 * 17 16 15 37 37 H 1.08992 * 110.30972 * 338.59758 * 20 18 17 38 38 H 1.09006 * 110.30811 * 100.66779 * 20 18 17 39 39 H 1.09004 * 109.91349 * 118.13179 * 21 20 18 40 40 H 1.09004 * 109.91968 * 239.22276 * 21 20 18 41 41 H 1.00898 * 110.99496 * 264.80912 * 22 21 20 42 42 H 1.09003 * 110.66847 * 202.36017 * 23 22 21 43 43 H 1.08998 * 110.66495 * 79.22947 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0052 9 6 1.2509 -2.4992 -0.0005 10 6 2.2398 -3.6591 -0.1331 11 1 1.6906 -4.5970 -0.2150 12 6 3.1427 -3.7031 1.1018 13 6 4.1436 -4.8526 0.9556 14 6 4.9532 -4.6538 -0.3288 15 6 3.9978 -4.5823 -1.5222 16 7 3.0615 -3.4667 -1.3349 17 6 2.2194 -3.2810 -2.5241 18 6 3.0326 -2.5930 -3.6226 19 1 3.5343 -1.7077 -3.2318 20 6 2.1300 -2.2256 -4.8227 21 6 2.9791 -2.5270 -6.0715 22 7 4.2949 -3.0066 -5.5961 23 6 4.0544 -3.5768 -4.2459 24 1 -0.4849 0.8401 0.0004 25 1 0.6970 -2.5988 0.9329 26 1 0.5554 -2.5171 -0.8396 27 1 3.6820 -2.7602 1.1920 28 1 2.5340 -3.8607 1.9921 29 1 4.8167 -4.8608 1.8129 30 1 3.6060 -5.7995 0.9056 31 1 5.5209 -3.7259 -0.2610 32 1 5.6385 -5.4911 -0.4601 33 1 4.5701 -4.4265 -2.4367 34 1 3.4400 -5.5158 -1.5974 35 1 1.8753 -4.2517 -2.8808 36 1 1.3594 -2.6625 -2.2674 37 1 1.2293 -2.8393 -4.8205 38 1 1.8669 -1.1683 -4.7884 39 1 2.4968 -3.2991 -6.6709 40 1 3.1029 -1.6205 -6.6640 41 1 4.9623 -2.2509 -5.5560 42 1 4.9767 -3.5927 -3.6651 43 1 3.6287 -4.5773 -4.3210 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260316222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:19 Heat of formation + Delta-G solvation = -21.396357 kcal Electronic energy + Delta-G solvation = -20174.167591 eV Core-core repulsion = 17445.625472 eV Total energy + Delta-G solvation = -2728.542120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66534 -39.00687 -35.28363 -34.58708 -32.91109 -31.21342 -29.73266 -28.76114 -26.50325 -25.40840 -23.27442 -22.75405 -21.68644 -20.89037 -20.38794 -18.22586 -17.82424 -16.60798 -16.33486 -16.19819 -15.69383 -15.27708 -15.10038 -14.64290 -14.47984 -14.35287 -14.13577 -13.82861 -13.17290 -13.04388 -12.94469 -12.70548 -12.59918 -12.40737 -12.38074 -12.09532 -12.00253 -11.87108 -11.63756 -11.46785 -11.37007 -11.01275 -10.87408 -10.68087 -10.40218 -9.57315 -8.90454 -8.08292 -6.10681 1.39690 1.40507 1.50982 2.46811 3.06546 3.27419 3.37770 3.84958 3.93037 4.04397 4.09778 4.15068 4.15954 4.37176 4.40304 4.50547 4.53561 4.58130 4.64391 4.74487 4.78877 4.90217 4.93298 4.98804 5.04136 5.05297 5.10923 5.15394 5.18725 5.28535 5.36235 5.41528 5.43705 5.54649 5.62957 5.70372 5.79389 5.90871 6.32113 6.44979 6.51649 6.62798 7.02574 7.54282 9.04206 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.009591 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.946107 B = 2918.802477 C = 4237.018577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.005 4.005 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.474 4.474 8 H 0.063 0.937 9 C 0.028 3.972 10 C 0.102 3.898 11 H 0.010 0.990 12 C -0.101 4.101 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.036 3.964 16 N -0.521 5.521 17 C 0.075 3.925 18 C -0.106 4.106 19 H 0.062 0.938 20 C -0.148 4.148 21 C 0.049 3.951 22 N -0.678 5.678 23 C 0.056 3.944 24 H 0.256 0.744 25 H -0.013 1.013 26 H -0.004 1.004 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.026 0.974 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.342 0.658 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -8.771 -7.231 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.200 4.200 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.512 4.512 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.006 4.006 11 H 0.028 0.972 12 C -0.138 4.138 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.091 4.091 16 N -0.246 5.246 17 C -0.054 4.054 18 C -0.127 4.127 19 H 0.080 0.920 20 C -0.188 4.188 21 C -0.081 4.081 22 N -0.305 5.305 23 C -0.073 4.073 24 H 0.065 0.935 25 H 0.005 0.995 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.158 0.842 42 H 0.106 0.894 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.838 -8.881 -7.554 15.255 hybrid contribution -1.160 1.357 0.760 1.941 sum 8.677 -7.524 -6.794 13.344 Atomic orbital electron populations 1.70103 1.07492 1.26818 1.54023 1.25787 0.95450 1.02469 0.96331 0.85678 0.78820 0.79969 0.77939 1.20557 1.21656 1.19071 1.21308 0.93212 0.90483 1.46216 0.91858 1.19182 0.93592 0.93853 0.94284 1.21480 0.93297 0.94996 0.90876 0.97217 1.21482 0.97312 0.99248 0.95807 1.21583 0.97708 0.97360 0.98556 1.21552 0.97378 1.02172 0.93673 1.22627 0.95098 0.91044 1.00350 1.61726 1.19024 1.42069 1.01783 1.21932 0.95774 0.97647 0.90010 1.22543 0.96974 0.98934 0.94228 0.91978 1.22791 0.99428 1.01221 0.95347 1.22693 0.89231 1.00270 0.95907 1.62817 1.09267 1.35080 1.23333 1.23337 0.98327 0.97619 0.88036 0.93549 0.99485 0.98607 0.92480 0.93087 0.90840 0.92251 0.92213 0.89465 0.88436 0.95910 0.95589 0.92703 0.91701 0.92535 0.90246 0.90477 0.84231 0.89382 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.47 -26.14 7.83 25.60 0.20 -25.94 16 8 H 0.06 3.47 6.72 -2.91 -0.02 3.45 16 9 C 0.03 1.45 4.18 29.85 0.12 1.58 16 10 C 0.10 4.21 2.10 44.94 0.09 4.31 16 11 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 12 C -0.10 -3.72 5.19 30.65 0.16 -3.57 16 13 C -0.11 -3.18 6.00 30.68 0.18 -3.00 16 14 C -0.11 -2.84 6.09 30.65 0.19 -2.65 16 15 C 0.04 1.04 5.11 86.33 0.44 1.48 16 16 N -0.52 -19.35 3.78 -871.10 -3.29 -22.64 16 17 C 0.07 2.77 4.29 86.30 0.37 3.14 16 18 C -0.11 -3.37 3.25 -9.59 -0.03 -3.40 16 19 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 20 C -0.15 -4.28 6.51 31.47 0.20 -4.08 16 21 C 0.05 1.13 7.51 86.45 0.65 1.78 16 22 N -0.68 -15.81 7.51 -502.22 -3.77 -19.58 16 23 C 0.06 1.41 5.13 86.65 0.44 1.85 16 24 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.00 -0.24 6.18 -2.39 -0.01 -0.26 16 27 H 0.06 2.36 6.80 -2.39 -0.02 2.35 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.47 3.84 -2.38 -0.01 2.46 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.03 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.05 2.52 5.28 -2.39 -0.01 2.51 16 37 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 38 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.34 7.20 8.92 -89.70 -0.80 6.40 16 42 H 0.09 2.09 6.31 -2.39 -0.02 2.07 16 43 H 0.08 1.93 7.85 -2.39 -0.02 1.91 16 Total: -1.00 -62.47 317.66 -1.09 -63.56 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.17 Total: 16.89 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.49 Total: -28.32 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -6.78 Total: -99.47 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -62.47 -1.09 -63.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds