Wall clock time and date at job start Mon Mar 30 2020 04:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47345 * 300.00214 * 3 2 1 6 6 H 1.48500 * 109.47303 * 60.00210 * 3 2 1 7 7 C 1.37876 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00599 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99817 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99845 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46820 * 180.02562 * 11 10 9 13 13 H 1.09002 * 108.92519 * 305.00335 * 12 11 10 14 14 C 1.45880 * 108.94041 * 63.71259 * 12 11 10 15 15 C 1.54310 * 112.18962 * 181.81620 * 14 12 11 16 16 C 1.50446 * 108.49846 * 281.46289 * 15 14 12 17 17 N 1.47999 * 112.82679 * 93.72627 * 16 15 14 18 18 C 1.46899 * 110.99974 * 191.34241 * 17 16 15 19 19 C 1.52990 * 117.49787 * 259.03162 * 18 17 16 20 20 C 1.52998 * 117.49639 * 190.40800 * 18 17 16 21 21 C 1.48003 * 114.62910 * 318.09255 * 17 16 15 22 22 C 1.50518 * 112.75035 * 318.08685 * 21 17 16 23 23 H 0.96998 * 119.99940 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46783 * 59.99871 * 9 7 2 25 25 H 1.09002 * 109.47059 * 300.00463 * 9 7 2 26 26 H 1.00894 * 111.00121 * 303.95517 * 10 9 7 27 27 H 1.08998 * 109.46877 * 60.00265 * 11 10 9 28 28 H 1.08998 * 109.47379 * 299.99930 * 11 10 9 29 29 H 1.09005 * 108.93846 * 302.51433 * 14 12 11 30 30 H 1.08998 * 108.94138 * 61.20359 * 14 12 11 31 31 H 1.09004 * 109.62993 * 41.16093 * 15 14 12 32 32 H 1.08999 * 109.63357 * 161.75411 * 15 14 12 33 33 H 1.09000 * 108.80743 * 214.58857 * 16 15 14 34 34 H 1.08999 * 108.80869 * 332.86324 * 16 15 14 35 35 H 1.08998 * 115.54995 * 44.74426 * 18 17 16 36 36 H 1.09001 * 117.50228 * 359.97438 * 19 18 17 37 37 H 1.09004 * 117.49544 * 145.02478 * 19 18 17 38 38 H 1.09003 * 117.49923 * 214.98025 * 20 18 17 39 39 H 1.08996 * 117.50312 * 0.02562 * 20 18 17 40 40 H 1.08999 * 108.81231 * 78.95675 * 21 17 16 41 41 H 1.08999 * 108.80790 * 197.33735 * 21 17 16 42 42 H 1.08997 * 109.71289 * 334.10573 * 22 21 17 43 43 H 1.09004 * 109.57884 * 213.49258 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 6 2.5303 -6.0430 0.0007 13 1 3.2063 -5.9097 -0.8439 14 6 3.3011 -5.9846 1.2378 15 6 4.3917 -7.0747 1.2970 16 6 3.7419 -8.3803 1.6665 17 7 3.3716 -9.1918 0.4855 18 6 2.5094 -10.3174 0.8697 19 6 3.1609 -11.6961 0.9934 20 6 2.2359 -11.3902 -0.1864 21 6 2.7745 -8.4224 -0.6289 22 6 1.7886 -7.3867 -0.1586 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8405 -3.5487 -0.7818 27 1 0.8802 -4.9817 -0.8897 28 1 0.8807 -4.9813 0.8903 29 1 3.7748 -5.0058 1.3136 30 1 2.6249 -6.1162 2.0826 31 1 4.8705 -7.1669 0.3221 32 1 5.1343 -6.8093 2.0494 33 1 4.4325 -8.9540 2.2846 34 1 2.8428 -8.1736 2.2469 35 1 1.7036 -10.0770 1.5632 36 1 4.2292 -11.7682 0.7894 37 1 2.7838 -12.3632 1.7687 38 1 1.2504 -11.8560 -0.1872 39 1 2.6961 -11.2611 -1.1659 40 1 3.5726 -7.9246 -1.1796 41 1 2.2638 -9.1137 -1.2992 42 1 1.3675 -7.6887 0.8003 43 1 0.9917 -7.2802 -0.8947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:05 Heat of formation + Delta-G solvation = 16.967312 kcal Electronic energy + Delta-G solvation = -18870.246752 eV Core-core repulsion = 16143.368206 eV Total energy + Delta-G solvation = -2726.878546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71480 -37.29053 -35.11788 -33.09008 -32.14887 -31.68629 -27.77584 -25.78082 -25.26469 -22.98942 -22.34185 -21.45729 -21.23576 -19.95428 -19.31386 -16.88689 -16.37317 -15.59499 -15.20763 -14.77212 -14.62295 -14.54280 -13.92198 -13.52508 -12.93487 -12.79724 -12.70622 -12.55235 -12.17326 -12.02219 -11.70427 -11.38090 -11.31431 -11.08501 -11.02654 -10.77415 -10.66334 -10.57523 -10.30092 -10.21755 -10.15919 -10.07788 -9.71203 -9.12775 -8.47882 -8.27612 -7.25814 -6.02910 -4.04800 3.31037 3.38174 3.43437 3.56208 3.65325 4.43129 4.70937 4.74896 4.80427 4.86445 5.02008 5.08673 5.12995 5.31796 5.33118 5.38439 5.43366 5.44762 5.56642 5.61253 5.73636 5.79640 5.86292 5.90767 5.98417 5.99970 6.07619 6.09746 6.20153 6.29415 6.35438 6.53143 6.71789 6.79862 7.08906 7.09264 7.27131 7.43618 7.79651 8.13901 8.41238 8.63265 9.05127 9.60253 11.08318 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054878 B = 0.003482 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.104348 B = 8038.728977 C = 8322.092332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.689 5.689 11 C 0.062 3.938 12 C -0.078 4.078 13 H 0.064 0.936 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.069 3.931 17 N -0.524 5.524 18 C 0.010 3.990 19 C -0.167 4.167 20 C -0.173 4.173 21 C 0.063 3.937 22 C -0.142 4.142 23 H 0.260 0.740 24 H -0.015 1.015 25 H 0.026 0.974 26 H 0.327 0.673 27 H 0.016 0.984 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -21.233 0.769 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.097 4.097 13 H 0.082 0.918 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.057 4.057 17 N -0.249 5.249 18 C -0.099 4.099 19 C -0.204 4.204 20 C -0.211 4.211 21 C -0.064 4.064 22 C -0.182 4.182 23 H 0.070 0.930 24 H 0.003 0.997 25 H 0.044 0.956 26 H 0.143 0.857 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.871 -21.247 1.295 22.082 hybrid contribution -0.882 1.277 -0.560 1.650 sum 4.990 -19.971 0.735 20.598 Atomic orbital electron populations 1.69977 1.06106 1.26651 1.51098 1.25005 0.94879 0.99412 0.95391 0.86429 0.80076 0.83337 0.77489 1.19629 1.21110 1.21002 1.21238 0.93543 0.90263 1.50068 0.91911 1.19542 0.90635 0.87499 0.95640 1.60657 1.21170 1.01344 1.48704 1.22010 0.95070 0.90303 0.99463 1.20165 0.97032 0.93562 0.98952 0.91750 1.20565 0.96981 0.99821 0.97388 1.21470 0.98338 0.93798 1.02424 1.21749 0.98988 0.93939 0.91062 1.61672 1.42775 1.10740 1.09691 1.22344 0.97858 0.87774 1.01919 1.23042 0.99538 0.97562 1.00291 1.23009 1.00765 1.02290 0.95022 1.21896 0.96727 0.94927 0.92804 1.21969 0.98715 0.95840 1.01650 0.92990 0.99746 0.95585 0.85685 0.96603 0.92156 0.89809 0.92854 0.91051 0.91273 0.91598 0.94741 0.89899 0.88317 0.89084 0.88902 0.88372 0.90773 0.91542 0.92064 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16 10 N -0.69 -14.81 5.68 -115.06 -0.65 -15.46 16 11 C 0.06 1.10 4.98 -3.82 -0.02 1.08 16 12 C -0.08 -1.10 1.88 -93.31 -0.18 -1.28 16 13 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 14 C -0.11 -1.53 4.44 -29.42 -0.13 -1.66 16 15 C -0.12 -1.42 5.63 -27.32 -0.15 -1.57 16 16 C 0.07 0.77 5.00 -4.49 -0.02 0.74 16 17 N -0.52 -5.72 4.81 -227.88 -1.10 -6.81 16 18 C 0.01 0.10 5.04 -67.72 -0.34 -0.24 16 19 C -0.17 -1.40 10.46 -26.74 -0.28 -1.68 16 20 C -0.17 -1.46 9.50 -26.73 -0.25 -1.71 16 21 C 0.06 0.70 5.10 -4.46 -0.02 0.67 16 22 C -0.14 -1.73 4.95 -27.29 -0.14 -1.86 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.33 6.74 8.72 -39.29 -0.34 6.40 16 27 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 30 H 0.05 0.77 7.51 -51.93 -0.39 0.38 16 31 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.40 6.42 -51.93 -0.33 0.07 16 35 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.84 7.77 -51.93 -0.40 0.44 16 40 H 0.07 0.85 6.58 -51.93 -0.34 0.50 16 41 H 0.07 0.68 6.73 -51.93 -0.35 0.33 16 42 H 0.06 0.77 6.99 -51.93 -0.36 0.41 16 43 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -29.61 329.81 -10.88 -40.49 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.84 Total: 2.35 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.98 Total: -15.92 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.01 Total: -48.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.61 -10.88 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.456 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds