Wall clock time and date at job start Mon Mar 30 2020 03:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99651 * 2 1 4 4 C 1.50693 * 109.47542 * 66.04555 * 3 2 1 5 5 H 1.08003 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00386 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99747 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00276 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47047 * 89.99534 * 8 6 4 10 10 H 1.48499 * 109.47164 * 329.99727 * 8 6 4 11 11 H 1.48500 * 109.47233 * 209.99460 * 8 6 4 12 12 C 1.46898 * 110.99925 * 236.04352 * 2 1 3 13 13 C 1.52992 * 109.47267 * 294.91203 * 12 2 1 14 14 H 1.08995 * 112.96686 * 65.90079 * 13 12 2 15 15 C 1.53951 * 113.77052 * 294.22326 * 13 12 2 16 16 C 1.53953 * 86.28747 * 222.09195 * 15 13 12 17 17 N 1.47574 * 86.11837 * 23.60551 * 16 15 13 18 18 C 1.34774 * 134.49317 * 155.35597 * 17 16 15 19 19 O 1.21287 * 120.00327 * 175.52142 * 18 17 16 20 20 C 1.50700 * 119.99971 * 355.52939 * 18 17 16 21 21 C 1.53005 * 117.49736 * 248.74527 * 20 18 17 22 22 C 1.52998 * 117.50327 * 180.08451 * 20 18 17 23 23 H 1.09003 * 109.47220 * 55.71361 * 1 2 3 24 24 H 1.09005 * 109.47010 * 175.71269 * 1 2 3 25 25 H 1.09000 * 109.47249 * 295.71339 * 1 2 3 26 26 H 1.09000 * 109.47027 * 306.04067 * 3 2 1 27 27 H 1.09004 * 109.46909 * 186.04725 * 3 2 1 28 28 H 0.97005 * 119.99950 * 0.02562 * 7 6 4 29 29 H 1.09005 * 109.47115 * 54.91623 * 12 2 1 30 30 H 1.08998 * 109.47037 * 174.91157 * 12 2 1 31 31 H 1.09000 * 113.73709 * 336.43525 * 15 13 12 32 32 H 1.08998 * 113.74177 * 107.74667 * 15 13 12 33 33 H 1.09003 * 113.76630 * 137.91078 * 16 15 13 34 34 H 1.08997 * 113.76598 * 269.18822 * 16 15 13 35 35 H 1.09002 * 115.55005 * 34.40619 * 20 18 17 36 36 H 1.08994 * 117.49564 * 359.97438 * 21 20 18 37 37 H 1.08997 * 117.49973 * 145.02324 * 21 20 18 38 38 H 1.09002 * 117.50361 * 214.97740 * 22 20 18 39 39 H 1.09003 * 117.49506 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5116 2.0484 6 6 2.0266 3.3496 1.5284 7 7 2.7118 4.0020 0.6148 8 14 1.5828 4.1870 3.1381 9 1 2.6603 3.9508 4.1324 10 1 0.3055 3.6292 3.6505 11 1 1.4299 5.6465 2.9111 12 6 1.9954 -0.7660 -1.1375 13 6 1.6110 -2.2387 -0.9824 14 1 0.5363 -2.4071 -1.0505 15 6 2.2718 -2.9287 0.2248 16 6 2.4986 -4.1288 -0.7125 17 7 2.4130 -3.1541 -1.8172 18 6 2.8798 -3.1153 -3.0809 19 8 2.5796 -2.1939 -3.8103 20 6 3.7746 -4.2168 -3.5878 21 6 5.2374 -3.8662 -3.8678 22 6 4.2732 -4.1145 -5.0306 23 1 -0.3634 0.5789 -0.8491 24 1 -0.3633 -1.0248 -0.0768 25 1 -0.3634 0.4459 0.9259 26 1 1.5611 1.9273 -0.8310 27 1 3.0797 1.3445 -0.1083 28 1 2.9426 3.5670 -0.2210 29 1 1.5742 -0.3762 -2.0642 30 1 3.0812 -0.6750 -1.1655 31 1 3.1934 -2.4488 0.5541 32 1 1.5827 -3.1354 1.0436 33 1 3.4813 -4.5887 -0.6074 34 1 1.6859 -4.8550 -0.7009 35 1 3.5614 -5.2123 -3.1984 36 1 5.5522 -2.8387 -3.6859 37 1 5.9863 -4.6311 -3.6632 38 1 4.3884 -5.0426 -5.5904 39 1 3.9537 -3.2505 -5.6134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:43 Heat of formation + Delta-G solvation = 27.602242 kcal Electronic energy + Delta-G solvation = -18734.627328 eV Core-core repulsion = 15872.376853 eV Total energy + Delta-G solvation = -2862.250476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43239 -38.40580 -36.28578 -35.93511 -32.75876 -29.97006 -28.54773 -26.76968 -25.11834 -24.18929 -22.64937 -22.62042 -21.25303 -20.35603 -18.58135 -17.47814 -16.75378 -16.11578 -15.48029 -15.17673 -14.71619 -14.43262 -13.86526 -13.69747 -13.46386 -13.14017 -12.77977 -12.50455 -12.22602 -11.86817 -11.76029 -11.44403 -11.25197 -11.10840 -10.93250 -10.80584 -10.67955 -10.63251 -10.46182 -10.31252 -10.07326 -9.64828 -8.75341 -8.55812 -8.34702 -7.33891 -6.34416 -4.03273 2.49184 2.74407 3.45424 3.49179 3.64997 3.70080 4.26822 4.53213 4.54863 4.59997 4.70448 4.87304 4.90317 5.07682 5.14965 5.28549 5.35547 5.38993 5.41716 5.45696 5.56369 5.70711 5.83843 5.93580 5.95275 6.00036 6.08211 6.27114 6.35672 6.49272 6.65775 7.02542 7.11544 7.73397 7.79359 7.97430 8.21588 8.33736 8.59983 8.88880 9.67896 11.04754 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.004451 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.301595 B = 6288.583157 C = 6639.809526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.528 5.528 3 C 0.184 3.816 4 C -0.587 4.587 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.915 5.915 8 Si 1.076 2.924 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.056 3.944 13 C 0.143 3.857 14 H 0.089 0.911 15 C -0.129 4.129 16 C 0.097 3.903 17 N -0.638 5.638 18 C 0.559 3.441 19 O -0.539 6.539 20 C -0.188 4.188 21 C -0.152 4.152 22 C -0.150 4.150 23 H 0.013 0.987 24 H 0.045 0.955 25 H 0.074 0.926 26 H -0.019 1.019 27 H 0.019 0.981 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -19.922 -4.400 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.058 3.942 4 C -0.626 4.626 5 H 0.076 0.924 6 C -0.191 4.191 7 N -0.552 5.552 8 Si 0.905 3.095 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.211 1.211 12 C -0.073 4.073 13 C 0.040 3.960 14 H 0.107 0.893 15 C -0.167 4.167 16 C -0.026 4.026 17 N -0.374 5.374 18 C 0.349 3.651 19 O -0.416 6.416 20 C -0.209 4.209 21 C -0.190 4.190 22 C -0.187 4.187 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.093 0.907 26 H -0.002 1.002 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.434 -18.219 -3.730 18.652 hybrid contribution -0.467 -1.205 -1.671 2.113 sum 0.967 -19.425 -5.401 20.185 Atomic orbital electron populations 1.22253 0.88757 0.98829 1.01325 1.62027 1.07025 1.17105 1.39055 1.19846 0.94649 0.82691 0.97009 1.21975 1.38835 0.99656 1.02093 0.92367 1.25869 0.94507 0.94715 1.03989 1.70757 1.36573 1.39970 1.07864 0.83440 0.75980 0.75847 0.74271 1.21440 1.21464 1.21133 1.22076 1.00304 0.91520 0.93419 1.22836 0.95429 0.91579 0.86162 0.89319 1.23407 1.02574 0.94483 0.96249 1.23249 1.01960 0.93732 0.83672 1.50170 1.53666 1.22603 1.10988 1.19349 0.80037 0.86191 0.79513 1.90717 1.59502 1.36486 1.54896 1.22121 0.97511 0.99242 1.02027 1.22942 0.90323 1.03489 1.02215 1.22964 1.01773 1.04169 0.89799 0.96861 0.93630 0.90699 1.00163 0.96332 0.92281 0.95000 0.91277 0.88436 0.89565 0.90128 0.89922 0.86277 0.88153 0.87850 0.88028 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.19 60.06 0.55 1.29 16 2 N -0.53 -11.63 4.65 -244.37 -1.14 -12.76 16 3 C 0.18 4.93 4.03 -4.98 -0.02 4.91 16 4 C -0.59 -16.86 8.57 -34.44 -0.30 -17.15 16 5 H 0.06 1.65 7.10 -52.48 -0.37 1.28 16 6 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 7 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 8 Si 1.08 25.57 29.90 -169.99 -5.08 20.48 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.06 1.11 4.43 -3.83 -0.02 1.09 16 13 C 0.14 2.18 3.84 -66.86 -0.26 1.92 16 14 H 0.09 1.29 6.85 -51.93 -0.36 0.94 16 15 C -0.13 -1.58 7.75 -25.80 -0.20 -1.78 16 16 C 0.10 0.94 8.61 -2.97 -0.03 0.91 16 17 N -0.64 -8.92 3.49 -171.19 -0.60 -9.51 16 18 C 0.56 8.61 7.71 -10.99 -0.08 8.52 16 19 O -0.54 -10.61 16.51 5.55 0.09 -10.52 16 20 C -0.19 -2.07 5.94 -91.77 -0.55 -2.61 16 21 C -0.15 -1.48 10.24 -26.69 -0.27 -1.75 16 22 C -0.15 -1.50 10.05 -26.69 -0.27 -1.77 16 23 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 24 H 0.04 0.74 6.29 -51.93 -0.33 0.41 16 25 H 0.07 1.56 6.98 -51.93 -0.36 1.20 16 26 H -0.02 -0.56 7.95 -51.93 -0.41 -0.97 16 27 H 0.02 0.53 7.81 -51.93 -0.41 0.12 16 28 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 29 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.07 1.45 7.95 -51.93 -0.41 1.03 16 31 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.11 1.29 7.67 -51.93 -0.40 0.89 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -34.05 322.46 -9.00 -43.05 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.36 Total: -1.71 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.53 Total: -6.14 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.98 Total: -50.03 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.05 -9.00 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.653 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds