Wall clock time and date at job start Mon Mar 30 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36931 * 120.00286 * 2 1 4 4 H 1.07999 * 119.99932 * 322.11049 * 3 2 1 5 5 C 1.38815 * 120.00031 * 142.10969 * 3 2 1 6 6 N 1.31623 * 119.99899 * 157.12428 * 5 3 2 7 7 Si 1.86802 * 119.99929 * 337.12348 * 5 3 2 8 8 H 1.48495 * 109.47087 * 95.74349 * 7 5 3 9 9 H 1.48508 * 109.47066 * 215.74269 * 7 5 3 10 10 H 1.48501 * 109.47214 * 335.74284 * 7 5 3 11 11 C 1.46508 * 120.00030 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46934 * 89.99390 * 11 2 1 13 13 H 1.08999 * 110.89051 * 51.12498 * 12 11 2 14 14 C 1.55157 * 111.00536 * 287.19728 * 12 11 2 15 15 C 1.54321 * 102.86243 * 206.22974 * 14 12 11 16 16 N 1.47028 * 107.27410 * 22.52853 * 15 14 12 17 17 C 1.34771 * 125.64777 * 180.96434 * 16 15 14 18 18 O 1.21281 * 120.00220 * 179.69494 * 17 16 15 19 19 C 1.50705 * 119.99880 * 359.42138 * 17 16 15 20 20 C 1.53001 * 117.49660 * 248.89380 * 19 17 16 21 21 C 1.53000 * 117.49681 * 180.27259 * 19 17 16 22 22 C 1.47425 * 108.70340 * 0.70626 * 16 15 14 23 23 H 1.09003 * 109.46770 * 269.91775 * 1 2 3 24 24 H 1.08995 * 109.47180 * 29.91715 * 1 2 3 25 25 H 1.08998 * 109.47786 * 149.92277 * 1 2 3 26 26 H 0.97004 * 119.99642 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46564 * 329.99960 * 11 2 1 28 28 H 1.08992 * 109.47415 * 209.99788 * 11 2 1 29 29 H 1.08996 * 110.72512 * 324.78631 * 14 12 11 30 30 H 1.08995 * 110.71821 * 88.06770 * 14 12 11 31 31 H 1.08997 * 109.99002 * 263.05170 * 15 14 12 32 32 H 1.08999 * 109.77502 * 141.88239 * 15 14 12 33 33 H 1.08999 * 115.55038 * 34.60190 * 19 17 16 34 34 H 1.09007 * 117.49918 * 0.02562 * 20 19 17 35 35 H 1.09000 * 117.49854 * 145.01871 * 20 19 17 36 36 H 1.08997 * 117.49970 * 214.97162 * 21 19 17 37 37 H 1.09001 * 117.50242 * 0.02562 * 21 19 17 38 38 H 1.08994 * 110.37170 * 94.93851 * 22 16 15 39 39 H 1.09002 * 110.36174 * 217.26190 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7804 2.0226 -0.5744 5 6 3.3183 1.3125 0.7383 6 7 4.2040 2.2314 0.4161 7 14 3.6340 0.1789 2.1891 8 1 4.4734 -0.9648 1.7502 9 1 4.3398 0.9290 3.2590 10 1 2.3399 -0.3286 2.7115 11 6 2.1975 -1.2688 -0.0006 12 6 2.4523 -1.7098 -1.4433 13 1 2.9023 -0.9036 -2.0225 14 6 1.1447 -2.2123 -2.1104 15 6 1.6619 -3.1895 -3.1870 16 7 3.0029 -3.6266 -2.7719 17 6 3.8005 -4.4710 -3.4555 18 8 4.8947 -4.7589 -3.0187 19 6 3.3302 -5.0622 -4.7595 20 6 3.0302 -6.5622 -4.7876 21 6 4.2792 -6.0187 -5.4844 22 6 3.3331 -2.9835 -1.4870 23 1 -0.3633 -0.0015 1.0277 24 1 -0.3633 0.8907 -0.5125 25 1 -0.3634 -0.8892 -0.5150 26 1 5.0208 2.3196 0.9319 27 1 1.6083 -2.0286 0.5130 28 1 3.1499 -1.1387 0.5132 29 1 0.5158 -2.7291 -1.3856 30 1 0.6045 -1.3854 -2.5712 31 1 1.7186 -2.6852 -4.1517 32 1 0.9961 -4.0498 -3.2546 33 1 2.7058 -4.4121 -5.3723 34 1 3.1725 -7.1214 -3.8628 35 1 2.2080 -6.8992 -5.4189 36 1 4.2787 -5.9982 -6.5742 37 1 5.2434 -6.2207 -5.0180 38 1 3.0853 -3.6449 -0.6569 39 1 4.3893 -2.7155 -1.4574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260714412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:54 Heat of formation + Delta-G solvation = -4.240237 kcal Electronic energy + Delta-G solvation = -19036.320218 eV Core-core repulsion = 16172.688949 eV Total energy + Delta-G solvation = -2863.631269 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28785 -39.31920 -37.34222 -36.88480 -33.95005 -32.73725 -30.54107 -28.25539 -27.64944 -25.31814 -23.45435 -23.27236 -22.92876 -21.48965 -20.00289 -18.78504 -18.52615 -17.40975 -17.01265 -16.53334 -16.31935 -15.63772 -15.18389 -14.95719 -14.84190 -14.50659 -14.33668 -13.99392 -13.64577 -13.36356 -13.34834 -12.93496 -12.68105 -12.55285 -12.43868 -12.42095 -11.92476 -11.85127 -11.59611 -11.51744 -11.44253 -11.29527 -10.97435 -10.63826 -9.71530 -8.74613 -8.22469 -5.58929 1.28666 1.38292 1.41136 1.48879 1.90746 2.40023 2.90484 3.00194 3.33339 3.50481 3.68927 3.81994 3.87984 3.98766 4.03367 4.19751 4.28848 4.41191 4.47010 4.58286 4.71143 4.72966 4.77951 4.83541 4.85947 4.92116 4.99337 5.05590 5.13173 5.18921 5.21705 5.23056 5.28772 5.44452 5.93543 6.16243 6.49484 6.99446 7.06847 7.63740 8.05131 8.97457 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030949 B = 0.005446 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.496864 B = 5140.354428 C = 5575.385483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.621 5.621 3 C -0.257 4.257 4 H 0.043 0.957 5 C -0.019 4.019 6 N -0.948 5.948 7 Si 0.937 3.063 8 H -0.280 1.280 9 H -0.309 1.309 10 H -0.255 1.255 11 C 0.146 3.854 12 C -0.108 4.108 13 H 0.054 0.946 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.614 5.614 17 C 0.542 3.458 18 O -0.598 6.598 19 C -0.198 4.198 20 C -0.132 4.132 21 C -0.154 4.154 22 C 0.109 3.891 23 H 0.011 0.989 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -17.653 -10.587 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.345 5.345 3 C -0.387 4.387 4 H 0.061 0.939 5 C -0.215 4.215 6 N -0.592 5.592 7 Si 0.766 3.234 8 H -0.207 1.207 9 H -0.238 1.238 10 H -0.178 1.178 11 C 0.020 3.980 12 C -0.130 4.130 13 H 0.072 0.928 14 C -0.147 4.147 15 C -0.018 4.018 16 N -0.346 5.346 17 C 0.333 3.667 18 O -0.480 6.480 19 C -0.218 4.218 20 C -0.169 4.169 21 C -0.191 4.191 22 C -0.014 4.014 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.166 0.834 34 H 0.104 0.896 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.743 -17.765 -10.352 22.343 hybrid contribution 1.053 0.467 1.055 1.562 sum -7.690 -17.297 -9.298 21.090 Atomic orbital electron populations 1.21272 0.81824 1.00787 0.98409 1.44114 1.02465 1.01016 1.86899 1.18695 1.05783 0.91699 1.22548 0.93928 1.26054 0.97029 0.98301 1.00127 1.70005 1.09312 1.38988 1.40934 0.85953 0.78350 0.78326 0.80816 1.20709 1.23775 1.17843 1.21121 0.95446 0.87638 0.93746 1.22781 0.96558 0.94516 0.99144 0.92769 1.22653 0.95976 0.98511 0.97576 1.22298 0.81834 0.98948 0.98711 1.48595 1.18788 1.44904 1.22295 1.20194 0.83098 0.77672 0.85701 1.90661 1.23329 1.62694 1.71306 1.22209 1.08219 0.95891 0.95529 1.23046 1.00434 0.90424 1.03002 1.23036 0.94890 1.00408 1.00762 1.22187 0.98865 0.94075 0.86294 0.97096 0.94365 0.90896 0.92969 0.90784 0.95689 0.88879 0.89377 0.90141 0.88166 0.83366 0.89569 0.84319 0.85132 0.90065 0.90608 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.23 10.51 127.77 1.34 5.57 16 2 N -0.62 -27.67 2.44 -726.95 -1.77 -29.44 16 3 C -0.26 -14.37 9.90 84.04 0.83 -13.54 16 4 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 5 C -0.02 -1.09 5.29 84.86 0.45 -0.64 16 6 N -0.95 -59.94 13.97 21.65 0.30 -59.63 16 7 Si 0.94 46.66 25.09 68.60 1.72 48.38 16 8 H -0.28 -13.56 6.68 99.48 0.66 -12.90 16 9 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 10 H -0.25 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.15 5.80 4.02 86.38 0.35 6.14 16 12 C -0.11 -3.75 3.25 -9.40 -0.03 -3.78 16 13 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 14 C -0.11 -2.60 5.03 31.78 0.16 -2.44 16 15 C 0.10 2.09 6.30 86.73 0.55 2.64 16 16 N -0.61 -17.64 3.33 -811.78 -2.70 -20.34 16 17 C 0.54 16.52 7.63 87.66 0.67 17.19 16 18 O -0.60 -23.85 16.51 -3.03 -0.05 -23.90 16 19 C -0.20 -3.88 5.54 -11.54 -0.06 -3.95 16 20 C -0.13 -1.93 10.23 30.60 0.31 -1.61 16 21 C -0.15 -2.70 10.04 30.59 0.31 -2.39 16 22 C 0.11 3.70 6.38 86.86 0.55 4.26 16 23 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 24 H 0.04 1.35 8.04 -2.39 -0.02 1.33 16 25 H 0.07 1.94 6.41 -2.39 -0.02 1.93 16 26 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 27 H 0.07 2.46 7.90 -2.39 -0.02 2.44 16 28 H 0.03 1.15 3.36 -2.39 -0.01 1.14 16 29 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 30 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 31 H 0.08 1.43 7.99 -2.39 -0.02 1.41 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.15 2.12 7.68 -2.39 -0.02 2.10 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.13 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.87 7.67 -2.39 -0.02 1.86 16 38 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 39 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 Total: -1.00 -74.61 312.37 3.90 -70.71 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.97 Total: 6.77 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.43 Total: 7.45 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.17 Total: -109.42 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.72 Total: 48.38 kcal Total: -74.61 3.90 -70.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.471 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds