Wall clock time and date at job start Mon Mar 30 2020 03:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 119.99913 * 2 1 4 4 H 1.07996 * 120.00487 * 321.77899 * 3 2 1 5 5 C 1.38819 * 119.99996 * 141.78393 * 3 2 1 6 6 N 1.31621 * 120.00153 * 157.37346 * 5 3 2 7 7 Si 1.86793 * 119.99821 * 337.37149 * 5 3 2 8 8 H 1.48502 * 109.47111 * 95.66951 * 7 5 3 9 9 H 1.48504 * 109.46952 * 215.67153 * 7 5 3 10 10 H 1.48498 * 109.47293 * 335.66729 * 7 5 3 11 11 C 1.46506 * 119.99955 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47242 * 89.99951 * 11 2 1 13 13 H 1.08999 * 110.88523 * 308.87878 * 12 11 2 14 14 C 1.55158 * 111.00586 * 72.80461 * 12 11 2 15 15 C 1.54332 * 103.02413 * 153.37940 * 14 12 11 16 16 N 1.47018 * 107.26501 * 338.14183 * 15 14 12 17 17 C 1.34773 * 125.65014 * 178.84927 * 16 15 14 18 18 O 1.21280 * 120.00032 * 179.68999 * 17 16 15 19 19 C 1.50698 * 119.99838 * 359.69009 * 17 16 15 20 20 C 1.53001 * 117.50138 * 111.25585 * 19 17 16 21 21 C 1.53001 * 117.49857 * 179.91471 * 19 17 16 22 22 C 1.47428 * 108.70388 * 358.58155 * 16 15 14 23 23 H 1.08999 * 109.46894 * 265.67641 * 1 2 3 24 24 H 1.08991 * 109.46879 * 25.68252 * 1 2 3 25 25 H 1.09005 * 109.47119 * 145.68195 * 1 2 3 26 26 H 0.96995 * 120.00293 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47162 * 329.99738 * 11 2 1 28 28 H 1.08998 * 109.46767 * 209.99906 * 11 2 1 29 29 H 1.09003 * 110.71847 * 271.94255 * 14 12 11 30 30 H 1.09003 * 110.71821 * 35.21028 * 14 12 11 31 31 H 1.09000 * 109.98952 * 218.66224 * 15 14 12 32 32 H 1.09003 * 109.77502 * 97.49531 * 15 14 12 33 33 H 1.09002 * 115.54991 * 325.58172 * 19 17 16 34 34 H 1.09003 * 117.49938 * 215.01004 * 20 19 17 35 35 H 1.09004 * 117.49572 * 0.02562 * 20 19 17 36 36 H 1.08994 * 117.50081 * 359.97148 * 21 19 17 37 37 H 1.09006 * 117.50025 * 144.99859 * 21 19 17 38 38 H 1.09001 * 110.36695 * 143.19193 * 22 16 15 39 39 H 1.08995 * 110.37317 * 265.40987 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7833 2.0209 -0.5786 5 6 3.3147 1.3147 0.7437 6 7 4.1996 2.2359 0.4263 7 14 3.6265 0.1807 2.1949 8 1 4.4690 -0.9616 1.7585 9 1 4.3271 0.9312 3.2679 10 1 2.3311 -0.3288 2.7123 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5294 -1.6962 -2.0226 14 6 3.5417 -0.8286 -2.1100 15 6 4.1394 -1.7654 -3.1810 16 7 3.8377 -3.1448 -2.7717 17 6 4.1715 -4.2576 -3.4547 18 8 3.8747 -5.3493 -3.0175 19 6 4.9134 -4.1455 -4.7615 20 6 6.3630 -4.6339 -4.7952 21 6 5.2654 -5.4453 -5.4879 22 6 3.1151 -3.1094 -1.4871 23 1 -0.3633 -0.0775 1.0247 24 1 -0.3633 0.9261 -0.4453 25 1 -0.3633 -0.8488 -0.5794 26 1 5.0135 2.3262 0.9462 27 1 1.6084 -2.0287 0.5130 28 1 3.1499 -1.1386 0.5133 29 1 3.0958 0.0529 -2.5707 30 1 4.3034 -0.5424 -1.3847 31 1 5.2185 -1.6236 -3.2396 32 1 3.6830 -1.5576 -4.1488 33 1 4.6596 -3.2799 -5.3734 34 1 7.0629 -4.0894 -5.4290 35 1 6.7799 -5.0367 -3.8721 36 1 4.9607 -6.3815 -5.0203 37 1 5.2432 -5.4348 -6.5777 38 1 2.3549 -3.8900 -1.4578 39 1 3.8113 -3.2275 -0.6568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260714416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:58 Heat of formation + Delta-G solvation = 16.456081 kcal Electronic energy + Delta-G solvation = -19169.848426 eV Core-core repulsion = 16307.114617 eV Total energy + Delta-G solvation = -2862.733809 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04603 -37.95048 -36.04857 -35.46934 -31.94190 -31.23179 -29.08821 -26.75648 -25.84716 -23.98841 -22.57717 -22.16829 -21.16909 -19.91866 -18.80612 -17.44500 -16.92879 -15.71618 -15.43725 -15.29846 -14.94102 -14.07425 -13.78950 -13.45449 -13.32222 -13.15273 -12.64081 -12.38006 -12.18349 -12.09238 -11.77716 -11.68707 -11.46046 -10.98730 -10.83806 -10.70455 -10.62850 -10.50788 -10.32231 -10.15571 -9.76266 -9.72004 -9.55179 -8.54965 -8.44182 -6.84032 -6.04559 -3.45113 2.56545 3.09770 3.26956 3.44407 3.49878 3.78097 4.47575 4.49456 4.68012 4.77742 4.84805 5.01819 5.08378 5.23659 5.41551 5.44155 5.46249 5.56872 5.63469 5.75967 5.81611 5.87893 5.97702 5.98366 6.19680 6.25676 6.28579 6.38320 6.49436 6.57033 6.68463 6.70654 6.87292 6.98699 7.70722 8.01345 8.28869 8.33411 8.94614 9.67119 10.09309 11.10806 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.005681 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.427948 B = 4927.389627 C = 5151.117640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.611 5.611 3 C -0.266 4.266 4 H 0.078 0.922 5 C 0.040 3.960 6 N -0.897 5.897 7 Si 0.870 3.130 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.112 4.112 13 H 0.076 0.924 14 C -0.104 4.104 15 C 0.097 3.903 16 N -0.610 5.610 17 C 0.554 3.446 18 O -0.552 6.552 19 C -0.189 4.189 20 C -0.153 4.153 21 C -0.150 4.150 22 C 0.107 3.893 23 H 0.006 0.994 24 H 0.045 0.955 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 -10.004 -9.545 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.160 4.160 6 N -0.538 5.538 7 Si 0.700 3.300 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.142 4.142 15 C -0.026 4.026 16 N -0.343 5.343 17 C 0.343 3.657 18 O -0.431 6.431 19 C -0.210 4.210 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.016 4.016 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.361 -10.517 -9.300 14.105 hybrid contribution 0.325 -0.369 0.850 0.982 sum 1.686 -10.886 -8.449 13.883 Atomic orbital electron populations 1.21083 0.84587 0.99025 0.97408 1.44022 1.00751 1.01933 1.86720 1.18740 1.06106 0.90744 1.23843 0.90449 1.25427 0.96924 0.96252 0.97438 1.69866 1.08681 1.35875 1.39402 0.87053 0.78049 0.80171 0.84727 1.21344 1.22894 1.19478 1.21085 0.96609 0.87909 0.92222 1.23003 0.97943 0.91752 1.00633 0.90532 1.22497 0.98086 0.96903 0.96705 1.22262 1.00190 0.80913 0.99223 1.48500 1.56424 1.06284 1.23049 1.19286 0.78953 0.82871 0.84602 1.90664 1.55845 1.26538 1.70054 1.22172 0.99930 1.01319 0.97544 1.22928 0.89817 1.02988 1.03286 1.22947 1.01563 0.94949 0.99248 1.22369 0.95494 0.98811 0.84893 0.97561 0.93643 0.95499 0.92738 0.94048 0.92556 0.89222 0.90092 0.91656 0.91891 0.85946 0.87808 0.88351 0.87535 0.88037 0.90930 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.40 10.70 59.85 0.64 3.04 16 2 N -0.61 -13.84 2.45 -181.12 -0.44 -14.28 16 3 C -0.27 -6.98 9.21 -15.06 -0.14 -7.12 16 4 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 5 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 6 N -0.90 -25.83 13.97 55.49 0.78 -25.05 16 7 Si 0.87 21.54 25.09 -169.99 -4.26 17.27 16 8 H -0.29 -6.85 6.68 56.52 0.38 -6.48 16 9 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.15 3.04 4.05 -4.04 -0.02 3.03 16 12 C -0.11 -1.98 3.26 -88.47 -0.29 -2.27 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.10 -1.86 5.72 -24.89 -0.14 -2.00 16 15 C 0.10 1.41 6.32 -3.06 -0.02 1.39 16 16 N -0.61 -9.77 3.33 -170.52 -0.57 -10.34 16 17 C 0.55 8.90 7.63 -10.99 -0.08 8.81 16 18 O -0.55 -10.59 16.51 5.56 0.09 -10.50 16 19 C -0.19 -2.26 5.53 -91.77 -0.51 -2.77 16 20 C -0.15 -1.54 10.24 -26.69 -0.27 -1.81 16 21 C -0.15 -1.54 10.05 -26.69 -0.27 -1.81 16 22 C 0.11 1.81 6.37 -2.53 -0.02 1.79 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 25 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.06 1.28 3.22 -51.93 -0.17 1.11 16 29 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.08 1.67 7.91 -51.93 -0.41 1.26 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.81 7.97 -51.93 -0.41 0.39 16 33 H 0.12 1.26 7.68 -51.93 -0.40 0.86 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.11 1.25 7.67 -51.93 -0.40 0.85 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 39 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 314.69 15.07 4.74 4.74 Total: -1.00 -30.27 314.69 -7.29 -37.57 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.42 Total: -0.69 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.21 Total: 1.29 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.24 Total: -49.68 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.26 Total: 17.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.27 -7.29 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.021 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds