Wall clock time and date at job start Mon Mar 30 2020 04:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47127 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47073 * 120.00069 * 3 2 1 6 6 H 1.48501 * 109.47003 * 240.00020 * 3 2 1 7 7 C 1.37879 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99481 * 174.41077 * 7 2 1 9 9 C 1.50700 * 120.00619 * 354.41175 * 7 2 1 10 10 C 1.53003 * 109.52043 * 303.95565 * 9 7 2 11 11 N 1.46895 * 109.47178 * 305.26385 * 10 9 7 12 12 C 1.53115 * 109.52432 * 183.76672 * 9 7 2 13 13 C 1.53039 * 109.27874 * 297.74592 * 12 9 7 14 14 N 1.46839 * 109.52538 * 300.82675 * 13 12 9 15 15 C 1.46893 * 111.00121 * 185.83975 * 14 13 12 16 16 C 1.54267 * 110.03407 * 174.29163 * 15 14 13 17 17 C 1.54886 * 104.19710 * 217.10412 * 16 15 14 18 18 C 1.54884 * 102.75129 * 37.93969 * 17 16 15 19 19 C 1.53873 * 110.03789 * 57.12473 * 15 14 13 20 20 C 1.46850 * 111.20297 * 61.73784 * 14 13 12 21 21 C 1.53040 * 109.52029 * 298.26318 * 20 14 13 22 22 H 0.96993 * 119.99954 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46808 * 65.26409 * 10 9 7 24 24 H 1.08997 * 109.47321 * 185.26064 * 10 9 7 25 25 H 1.00903 * 111.00308 * 184.53429 * 11 10 9 26 26 H 1.00902 * 111.00446 * 308.48725 * 11 10 9 27 27 H 1.08998 * 109.50324 * 57.69101 * 12 9 7 28 28 H 1.08999 * 109.50453 * 177.80644 * 12 9 7 29 29 H 1.08997 * 109.46235 * 180.80226 * 13 12 9 30 30 H 1.09002 * 109.45768 * 60.84122 * 13 12 9 31 31 H 1.09000 * 110.01936 * 295.73449 * 15 14 13 32 32 H 1.08996 * 110.48749 * 335.78449 * 16 15 14 33 33 H 1.09006 * 110.48795 * 98.42458 * 16 15 14 34 34 H 1.09009 * 110.75618 * 279.62836 * 17 16 15 35 35 H 1.09003 * 110.75633 * 156.26154 * 17 16 15 36 36 H 1.08993 * 110.49206 * 203.38019 * 18 17 16 37 37 H 1.09001 * 110.48221 * 80.73514 * 18 17 16 38 38 H 1.08996 * 110.03557 * 238.57174 * 19 15 14 39 39 H 1.09004 * 110.02742 * 359.95472 * 19 15 14 40 40 H 1.08993 * 109.46442 * 178.24776 * 20 14 13 41 41 H 1.08992 * 109.46162 * 58.27463 * 20 14 13 42 42 H 1.09004 * 109.50106 * 299.23019 * 21 20 14 43 43 H 1.09001 * 109.50189 * 179.11824 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0807 -1.1964 -0.0906 9 6 1.2564 -2.4961 0.1282 10 6 0.4076 -2.4753 1.4010 11 7 1.2634 -2.1710 2.5554 12 6 2.2545 -3.6552 0.1961 13 6 3.0585 -3.7066 -1.1051 14 7 2.1447 -3.8897 -2.2398 15 6 2.8904 -4.0820 -3.4906 16 6 1.9171 -4.4138 -4.6405 17 6 2.6825 -5.4514 -5.4987 18 6 3.4115 -6.3059 -4.4323 19 6 3.8406 -5.2851 -3.3583 20 6 1.2072 -2.7651 -2.3536 21 6 0.3480 -2.6857 -1.0896 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3649 -1.7117 1.3101 24 1 -0.0597 -3.4499 1.5420 25 1 0.7409 -2.2240 3.4170 26 1 2.0663 -2.7815 2.5814 27 1 2.9317 -3.5036 1.0366 28 1 1.7147 -4.5930 0.3275 29 1 3.7603 -4.5397 -1.0657 30 1 3.6089 -2.7739 -1.2288 31 1 3.4580 -3.1824 -3.7287 32 1 0.9971 -4.8473 -4.2485 33 1 1.6996 -3.5204 -5.2261 34 1 3.3999 -4.9570 -6.1539 35 1 1.9886 -6.0629 -6.0755 36 1 4.2847 -6.7934 -4.8657 37 1 2.7328 -7.0450 -4.0066 38 1 4.8692 -4.9695 -3.5329 39 1 3.7490 -5.7257 -2.3655 40 1 0.5643 -2.9145 -3.2209 41 1 1.7662 -1.8369 -2.4715 42 1 -0.2219 -3.6082 -0.9785 43 1 -0.3370 -1.8414 -1.1677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:25 Heat of formation + Delta-G solvation = -6.722312 kcal Electronic energy + Delta-G solvation = -20323.709513 eV Core-core repulsion = 17595.803707 eV Total energy + Delta-G solvation = -2727.905805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12066 -37.09760 -34.15701 -31.88357 -30.54105 -29.99703 -28.21235 -27.02877 -24.87717 -23.84848 -22.19319 -20.62333 -20.05783 -19.05166 -18.48756 -16.22740 -15.49642 -15.20212 -14.68692 -14.56899 -13.98490 -13.65035 -13.31956 -13.09227 -13.02344 -12.78298 -12.15225 -11.98133 -11.41593 -11.27932 -11.06042 -10.90906 -10.77519 -10.68860 -10.61170 -10.55814 -10.45252 -10.40424 -10.20957 -10.04688 -9.72659 -9.07985 -8.82370 -8.60209 -8.14554 -7.43633 -7.28112 -5.80024 -3.82302 3.41044 3.45416 3.50590 4.58074 4.61148 4.79749 4.88588 5.16301 5.49543 5.61594 5.69046 5.76873 5.80835 5.84459 5.87745 5.98845 6.03085 6.08533 6.11171 6.22431 6.31867 6.39261 6.43757 6.50367 6.54215 6.58298 6.65427 6.74600 6.82744 7.00374 7.05974 7.22475 7.32708 7.54169 7.74434 7.80620 8.03627 8.05702 8.29377 8.41928 8.62917 8.70919 9.11034 9.79668 11.23309 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.006934 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.083841 B = 4036.842866 C = 4441.516208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.883 3.117 4 H -0.292 1.292 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.471 4.471 8 H 0.046 0.954 9 C 0.074 3.926 10 C 0.078 3.922 11 N -0.826 5.826 12 C -0.102 4.102 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.079 3.921 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.072 3.928 21 C -0.099 4.099 22 H 0.255 0.745 23 H 0.098 0.902 24 H -0.027 1.027 25 H 0.311 0.689 26 H 0.320 0.680 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.021 0.979 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -9.512 -5.973 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.125 4.125 3 Si 0.713 3.287 4 H -0.218 1.218 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.073 3.927 10 C -0.052 4.052 11 N -0.353 5.353 12 C -0.140 4.140 13 C -0.062 4.062 14 N -0.257 5.257 15 C -0.030 4.030 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.055 4.055 21 C -0.137 4.137 22 H 0.066 0.934 23 H 0.116 0.884 24 H -0.009 1.009 25 H 0.121 0.879 26 H 0.132 0.868 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.419 -9.060 -6.223 11.511 hybrid contribution 0.802 0.773 0.234 1.138 sum 4.221 -8.287 -5.989 11.062 Atomic orbital electron populations 1.69729 1.05710 1.25784 1.51950 1.24702 0.94564 0.98228 0.95000 0.86819 0.79687 0.84124 0.78101 1.21758 1.20458 1.21148 1.20719 0.92268 0.89862 1.48068 0.93531 1.18173 0.91479 0.92407 0.90632 1.21907 0.96597 0.95699 0.91018 1.58660 1.11169 1.61318 1.04119 1.21631 0.98590 0.98720 0.95018 1.21972 0.94175 0.98692 0.91335 1.62211 1.18019 1.43490 1.01959 1.22201 0.93679 0.96319 0.90766 1.22416 0.99018 0.98338 0.95505 1.22465 0.98870 0.97500 0.97312 1.22288 0.99503 0.97719 0.96144 1.22276 0.97899 0.95805 0.99882 1.21954 0.94214 0.90940 0.98355 1.21566 0.98214 0.99657 0.94297 0.93438 0.88417 1.00872 0.87905 0.86830 0.93215 0.94382 0.93049 0.94421 0.94792 0.90488 0.92299 0.92018 0.91956 0.92415 0.91666 0.92560 0.90606 0.93476 0.94082 0.96040 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 9.45 55.43 0.52 -23.75 16 2 C 0.07 2.00 5.13 -17.82 -0.09 1.91 16 3 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.47 -12.18 5.71 -34.44 -0.20 -12.38 16 8 H 0.05 1.25 6.74 -52.48 -0.35 0.90 16 9 C 0.07 1.71 0.33 -155.54 -0.05 1.66 16 10 C 0.08 1.81 5.43 -3.83 -0.02 1.79 16 11 N -0.83 -17.56 9.08 -10.37 -0.09 -17.66 16 12 C -0.10 -2.09 4.57 -26.65 -0.12 -2.21 16 13 C 0.07 1.27 4.96 -3.84 -0.02 1.25 16 14 N -0.53 -9.97 4.44 -225.37 -1.00 -10.97 16 15 C 0.08 1.27 2.67 -66.60 -0.18 1.09 16 16 C -0.11 -1.63 5.14 -25.07 -0.13 -1.75 16 17 C -0.12 -1.43 6.91 -24.74 -0.17 -1.61 16 18 C -0.12 -1.39 6.83 -25.08 -0.17 -1.56 16 19 C -0.12 -1.66 5.88 -25.61 -0.15 -1.81 16 20 C 0.07 1.52 5.08 -3.83 -0.02 1.50 16 21 C -0.10 -2.27 4.73 -26.65 -0.13 -2.39 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.10 2.56 6.16 -51.93 -0.32 2.24 16 24 H -0.03 -0.60 8.14 -51.93 -0.42 -1.02 16 25 H 0.31 5.82 9.08 -39.29 -0.36 5.46 16 26 H 0.32 6.32 7.19 -39.29 -0.28 6.04 16 27 H 0.05 1.00 6.72 -51.93 -0.35 0.65 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.88 5.98 -51.93 -0.31 0.57 16 30 H 0.04 0.81 6.71 -51.93 -0.35 0.46 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.16 7.85 -51.93 -0.41 0.76 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.10 6.19 -51.93 -0.32 0.78 16 40 H 0.05 0.92 6.84 -51.93 -0.36 0.56 16 41 H 0.04 0.96 7.31 -51.93 -0.38 0.58 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -26.81 309.83 -9.84 -36.64 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.47 Total: 8.94 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.45 Total: -14.51 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.57 Total: -52.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.81 -9.84 -36.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.920 kcal (2) G-P(sol) polarization free energy of solvation -26.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds