Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48505 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47129 * 300.00142 * 3 2 1 6 6 H 1.48496 * 109.47042 * 60.00198 * 3 2 1 7 7 C 1.37876 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47328 * 299.99742 * 9 7 2 11 11 C 1.53003 * 109.47095 * 59.99890 * 9 7 2 12 12 C 1.52999 * 109.47570 * 59.99879 * 11 9 7 13 13 C 1.53002 * 109.46965 * 59.99707 * 12 11 9 14 14 C 1.53003 * 109.47216 * 300.00510 * 13 12 11 15 15 H 1.09000 * 109.47187 * 299.99494 * 14 13 12 16 16 N 1.46905 * 109.46757 * 179.97438 * 14 13 12 17 17 C 1.40077 * 111.00218 * 308.15023 * 16 14 13 18 18 C 1.54519 * 111.51160 * 188.14921 * 17 16 14 19 19 C 1.50736 * 108.94533 * 283.99170 * 18 17 16 20 20 N 1.48072 * 112.93842 * 92.64555 * 19 18 17 21 21 C 1.47748 * 113.78771 * 318.28905 * 20 19 18 22 22 C 1.47689 * 110.99825 * 76.79495 * 16 14 13 23 23 C 1.52998 * 109.47244 * 60.00056 * 14 13 12 24 24 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.02562 * 11 9 7 26 26 H 1.09001 * 109.47177 * 299.99730 * 11 9 7 27 27 H 1.09000 * 109.47165 * 300.00380 * 12 11 9 28 28 H 1.08992 * 109.47706 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.47059 * 179.97438 * 13 12 11 30 30 H 1.09005 * 109.47063 * 60.00181 * 13 12 11 31 31 H 1.09001 * 109.07313 * 308.67171 * 17 16 14 32 32 H 1.09001 * 109.07383 * 67.69901 * 17 16 14 33 33 H 1.08999 * 109.55222 * 43.83249 * 18 17 16 34 34 H 1.09000 * 109.55449 * 164.15054 * 18 17 16 35 35 H 1.08995 * 108.79313 * 213.53890 * 19 18 17 36 36 H 1.09003 * 108.78937 * 331.76009 * 19 18 17 37 37 H 1.00897 * 111.00202 * 192.21784 * 20 19 18 38 38 H 1.08999 * 108.99346 * 79.50188 * 21 20 19 39 39 H 1.09000 * 108.99196 * 198.24628 * 21 20 19 40 40 H 1.09002 * 109.73655 * 271.63636 * 22 16 14 41 41 H 1.08995 * 109.74204 * 32.33520 * 22 16 14 42 42 H 1.09000 * 109.47251 * 180.02562 * 23 14 13 43 43 H 1.09000 * 109.47487 * 59.99622 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 6 1.2518 -2.4997 -2.4980 13 6 2.2461 -3.6626 -2.4974 14 6 3.1253 -3.5813 -1.2479 15 1 3.6703 -2.6373 -1.2479 16 7 4.0795 -4.6982 -1.2471 17 6 3.4214 -5.9209 -1.4322 18 6 4.3799 -7.1162 -1.2324 19 6 5.2618 -7.2450 -2.4480 20 7 6.5425 -6.5144 -2.3120 21 6 6.4052 -5.1821 -1.6882 22 6 5.1877 -4.4482 -2.1907 23 6 2.2452 -3.6621 0.0011 24 1 -0.4850 0.8400 0.0004 25 1 -0.1735 -3.5242 -1.2488 26 1 -0.3365 -1.7520 -1.2495 27 1 1.7969 -1.5557 -2.4980 28 1 0.6255 -2.5571 -3.3882 29 1 2.8727 -3.6053 -3.3874 30 1 1.7011 -4.6066 -2.4974 31 1 2.6031 -5.9969 -0.7161 32 1 3.0146 -5.9570 -2.4428 33 1 4.9970 -6.9454 -0.3503 34 1 3.8008 -8.0306 -1.1031 35 1 5.4758 -8.3003 -2.6164 36 1 4.7257 -6.8554 -3.3135 37 1 7.0187 -6.4509 -3.1992 38 1 6.3260 -5.3027 -0.6078 39 1 7.2934 -4.5917 -1.9135 40 1 4.9184 -4.8165 -3.1807 41 1 5.3961 -3.3794 -2.2391 42 1 2.8715 -3.6037 0.8913 43 1 1.7002 -4.6061 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = -2.726260 kcal Electronic energy + Delta-G solvation = -20255.571730 eV Core-core repulsion = 17527.839207 eV Total energy + Delta-G solvation = -2727.732524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87594 -37.25717 -34.47447 -32.25468 -32.03867 -29.81889 -28.81027 -26.09103 -25.52576 -24.81544 -21.99328 -21.19077 -20.07979 -19.88585 -18.32798 -16.62062 -15.68084 -15.49279 -15.24476 -15.03548 -14.45367 -14.05443 -13.60232 -13.14979 -12.91866 -12.82441 -12.53977 -12.18456 -11.92019 -11.54565 -11.35678 -11.23678 -11.12503 -11.07499 -10.89129 -10.75906 -10.50121 -10.33052 -10.09892 -9.97016 -9.54722 -9.16976 -9.02415 -8.57311 -8.41041 -8.22299 -7.65534 -5.94688 -3.98983 3.29930 3.38850 3.42046 4.16091 4.28515 4.46127 4.94637 5.04365 5.17056 5.35819 5.38125 5.46097 5.46899 5.63103 5.69678 5.70974 5.84910 5.88899 6.00514 6.03043 6.11701 6.31288 6.35338 6.37149 6.47477 6.51407 6.59765 6.75238 6.81351 6.87628 6.94233 7.05326 7.19894 7.37223 7.45895 7.53184 7.68431 7.75901 7.88549 7.97265 8.19221 8.51103 9.03939 9.64341 11.11200 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.006069 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.380271 B = 4612.443183 C = 5019.366282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.044 3.956 10 H 0.026 0.974 11 C -0.108 4.108 12 C -0.098 4.098 13 C -0.137 4.137 14 C 0.100 3.900 15 H 0.090 0.910 16 N -0.548 5.548 17 C 0.067 3.933 18 C -0.124 4.124 19 C 0.064 3.936 20 N -0.701 5.701 21 C 0.061 3.939 22 C 0.034 3.966 23 C -0.092 4.092 24 H 0.257 0.743 25 H 0.011 0.989 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.336 0.664 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -10.872 -5.605 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.026 3.974 10 H 0.044 0.956 11 C -0.146 4.146 12 C -0.136 4.136 13 C -0.176 4.176 14 C -0.007 4.007 15 H 0.108 0.892 16 N -0.271 5.271 17 C -0.062 4.062 18 C -0.162 4.162 19 C -0.065 4.065 20 N -0.332 5.332 21 C -0.068 4.068 22 C -0.095 4.095 23 C -0.130 4.130 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.219 -11.090 -4.577 14.543 hybrid contribution -0.374 1.486 -1.688 2.280 sum 7.845 -9.604 -6.265 13.894 Atomic orbital electron populations 1.69885 1.05830 1.26024 1.51309 1.24941 0.94743 0.98798 0.95500 0.86678 0.80264 0.84435 0.77498 1.19842 1.21244 1.21145 1.21189 0.92741 0.90410 1.49445 0.92613 1.18696 0.92605 0.92034 0.94109 0.95609 1.21519 0.98758 0.99207 0.95138 1.21308 0.96931 0.97931 0.97459 1.22099 0.98571 0.99404 0.97550 1.21778 0.91562 0.92417 0.94943 0.89236 1.59348 1.13118 1.02905 1.51730 1.21126 0.96349 0.89342 0.99403 1.21605 0.97733 0.97931 0.98905 1.21663 0.89613 0.97851 0.97329 1.60438 1.22706 1.20279 1.29769 1.21886 0.96172 0.87500 1.01242 1.22412 0.92687 1.00899 0.93495 1.21594 0.97323 0.98336 0.95791 0.93255 0.96988 0.89213 0.91217 0.95171 0.94463 0.93276 0.90464 0.96424 0.90004 0.91181 0.91618 0.95713 0.84719 0.89598 0.91529 0.95019 0.90507 0.92876 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.50 -13.09 6.61 -34.44 -0.23 -13.32 16 8 H 0.06 1.46 6.71 -52.49 -0.35 1.11 16 9 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 12 C -0.10 -2.05 5.70 -26.73 -0.15 -2.21 16 13 C -0.14 -2.51 4.45 -26.73 -0.12 -2.63 16 14 C 0.10 1.86 1.92 -67.71 -0.13 1.73 16 15 H 0.09 1.86 6.10 -51.93 -0.32 1.54 16 16 N -0.55 -8.70 3.90 -231.68 -0.90 -9.60 16 17 C 0.07 0.98 4.04 -6.55 -0.03 0.96 16 18 C -0.12 -1.52 5.68 -27.07 -0.15 -1.68 16 19 C 0.06 0.73 6.00 -4.31 -0.03 0.70 16 20 N -0.70 -8.00 6.94 -114.71 -0.80 -8.80 16 21 C 0.06 0.76 6.10 -4.47 -0.03 0.73 16 22 C 0.03 0.48 4.82 -4.50 -0.02 0.45 16 23 C -0.09 -1.91 4.64 -26.73 -0.12 -2.03 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.07 1.60 7.22 -51.93 -0.37 1.22 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.64 7.74 -51.93 -0.40 0.24 16 30 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 31 H 0.08 1.20 6.04 -51.93 -0.31 0.89 16 32 H 0.02 0.27 6.00 -51.93 -0.31 -0.04 16 33 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.30 6.52 -51.93 -0.34 -0.04 16 37 H 0.34 3.26 8.91 -39.29 -0.35 2.91 16 38 H 0.09 1.20 7.20 -51.93 -0.37 0.83 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.45 6.74 -51.93 -0.35 0.09 16 41 H 0.08 1.11 7.52 -51.93 -0.39 0.71 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -26.80 304.30 -10.32 -37.12 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.33 Total: 2.70 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.48 Total: -17.57 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -1.07 Total: -42.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.80 -10.32 -37.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.391 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds