Wall clock time and date at job start Mon Mar 30 2020 04:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48493 * 109.47499 * 264.87932 * 3 2 1 5 5 H 1.48508 * 109.46869 * 24.87505 * 3 2 1 6 6 H 1.48497 * 109.47033 * 144.87454 * 3 2 1 7 7 C 1.37877 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00505 * 4.60564 * 7 2 1 9 9 C 1.50704 * 119.99783 * 184.60956 * 7 2 1 10 10 H 1.09002 * 109.47122 * 334.80107 * 9 7 2 11 11 C 1.52997 * 109.47292 * 94.80674 * 9 7 2 12 12 C 1.52996 * 109.47230 * 59.99965 * 11 9 7 13 13 C 1.53001 * 109.47479 * 60.00100 * 12 11 9 14 14 C 1.53011 * 109.46703 * 300.00018 * 13 12 11 15 15 C 1.52999 * 109.46949 * 60.00092 * 14 13 12 16 16 H 1.09001 * 109.47381 * 59.99753 * 15 14 13 17 17 N 1.46898 * 109.46894 * 180.02562 * 15 14 13 18 18 C 1.47912 * 110.99634 * 299.09092 * 17 15 14 19 19 C 1.50799 * 108.49696 * 153.79208 * 18 17 15 20 20 C 1.53700 * 112.10206 * 92.55164 * 19 18 17 21 21 N 1.48059 * 112.46831 * 318.55333 * 20 19 18 22 22 C 1.44577 * 113.85821 * 318.31340 * 21 20 19 23 23 C 1.40012 * 111.00292 * 171.12920 * 17 15 14 24 24 H 0.97002 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46982 * 299.99629 * 11 9 7 26 26 H 1.09001 * 109.47113 * 179.97438 * 11 9 7 27 27 H 1.09001 * 109.47027 * 299.99996 * 12 11 9 28 28 H 1.09000 * 109.47584 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.47445 * 180.02562 * 13 12 11 30 30 H 1.09001 * 109.47075 * 59.99926 * 13 12 11 31 31 H 1.08991 * 109.47213 * 299.99802 * 14 13 12 32 32 H 1.09004 * 109.46581 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.63505 * 273.49541 * 18 17 15 34 34 H 1.08996 * 109.63076 * 34.09335 * 18 17 15 35 35 H 1.09006 * 108.95766 * 331.87388 * 19 18 17 36 36 H 1.09003 * 108.89103 * 213.18070 * 19 18 17 37 37 H 1.09003 * 108.88374 * 197.78467 * 20 19 18 38 38 H 1.08995 * 108.80363 * 79.26949 * 20 19 18 39 39 H 1.00903 * 111.00189 * 84.43759 * 21 20 19 40 40 H 1.08998 * 109.57347 * 334.42613 * 22 21 20 41 41 H 1.08994 * 109.57792 * 214.03663 * 22 21 20 42 42 H 1.09009 * 108.95688 * 308.76397 * 23 17 15 43 43 H 1.09008 * 108.95899 * 67.41548 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6049 1.9840 -1.3944 5 1 1.3965 2.6815 0.5890 6 1 3.4883 1.4738 0.8055 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1279 -0.0760 9 6 3.5079 -1.1961 0.1044 10 1 3.8995 -0.2498 -0.2687 11 6 3.9168 -1.3760 1.5676 12 6 3.3673 -2.7044 2.0912 13 6 3.9350 -3.8552 1.2579 14 6 3.5260 -3.6753 -0.2055 15 6 4.0757 -2.3469 -0.7290 16 1 5.1630 -2.3484 -0.6532 17 7 3.6825 -2.1739 -2.1338 18 6 4.2323 -3.2588 -2.9755 19 6 3.3395 -3.4302 -4.1786 20 6 3.8152 -2.5922 -5.3760 21 7 4.2629 -1.2385 -4.9770 22 6 3.4149 -0.6095 -3.9893 23 6 3.9936 -0.8862 -2.5871 24 1 -0.4851 0.8400 0.0004 25 1 3.5124 -0.5562 2.1613 26 1 5.0042 -1.3780 1.6434 27 1 2.2799 -2.7029 2.0154 28 1 3.6582 -2.8324 3.1338 29 1 3.5431 -4.8015 1.6306 30 1 5.0224 -3.8567 1.3337 31 1 2.4387 -3.6738 -0.2813 32 1 3.9308 -4.4949 -0.7992 33 1 5.2388 -2.9955 -3.3009 34 1 4.2599 -4.1869 -2.4047 35 1 2.3265 -3.1265 -3.9140 36 1 3.3301 -4.4821 -4.4641 37 1 2.9954 -2.4970 -6.0879 38 1 4.6437 -3.1094 -5.8597 39 1 5.2249 -1.2508 -4.6725 40 1 2.4081 -1.0218 -4.0567 41 1 3.3839 0.4656 -4.1659 42 1 3.5879 -0.1565 -1.8862 43 1 5.0774 -0.7757 -2.6230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261084178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:32 Heat of formation + Delta-G solvation = 5.165313 kcal Electronic energy + Delta-G solvation = -20781.732491 eV Core-core repulsion = 18054.342171 eV Total energy + Delta-G solvation = -2727.390319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67731 -37.35020 -34.09128 -32.65146 -31.93712 -30.01894 -29.08464 -26.07505 -25.40170 -24.39250 -21.65744 -21.32544 -20.19369 -19.64169 -18.64269 -16.45953 -16.11432 -15.35769 -15.00436 -14.67057 -14.18037 -13.93475 -13.61053 -13.42620 -12.87080 -12.76683 -12.40236 -12.30406 -12.14682 -12.00660 -11.62374 -11.19877 -11.06617 -10.80091 -10.51438 -10.41454 -10.30114 -10.26767 -10.21030 -10.08679 -9.67607 -9.44102 -8.97762 -8.69091 -8.37899 -8.03980 -7.41348 -5.94996 -3.88450 3.29317 3.38741 3.40468 4.46173 4.48885 4.57123 5.15596 5.28519 5.35401 5.38868 5.53901 5.55950 5.57761 5.70890 5.78702 5.81922 5.87178 6.06712 6.08723 6.18897 6.21879 6.24606 6.31610 6.37539 6.43122 6.45091 6.50156 6.59216 6.61483 6.63333 6.79961 7.02903 7.13703 7.20376 7.26081 7.30643 7.39842 7.65065 7.82114 8.00493 8.17008 8.67161 9.13555 9.68610 11.18845 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.010666 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.735135 B = 2624.491024 C = 3589.734373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.859 3.141 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.469 4.469 8 H 0.080 0.920 9 C 0.011 3.989 10 H 0.030 0.970 11 C -0.108 4.108 12 C -0.108 4.108 13 C -0.110 4.110 14 C -0.104 4.104 15 C 0.110 3.890 16 H 0.009 0.991 17 N -0.521 5.521 18 C 0.057 3.943 19 C -0.152 4.152 20 C 0.064 3.936 21 N -0.699 5.699 22 C 0.066 3.934 23 C 0.040 3.960 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.334 0.666 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 -5.736 -4.566 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.130 4.130 3 Si 0.687 3.313 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.507 4.507 8 H 0.098 0.902 9 C -0.008 4.008 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.148 4.148 14 C -0.142 4.142 15 C 0.003 3.997 16 H 0.027 0.973 17 N -0.244 5.244 18 C -0.071 4.071 19 C -0.191 4.191 20 C -0.065 4.065 21 N -0.329 5.329 22 C -0.064 4.064 23 C -0.091 4.091 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 8.191 -5.339 -5.126 11.040 hybrid contribution 1.559 0.636 0.829 1.877 sum 9.750 -4.703 -4.297 11.647 Atomic orbital electron populations 1.69876 1.06024 1.26333 1.52157 1.24960 0.94516 0.98120 0.95421 0.87199 0.80340 0.85144 0.78601 1.20158 1.21915 1.19405 1.20772 0.88020 0.94293 1.47606 0.90204 1.19377 0.98142 0.92742 0.90503 0.95254 1.21704 0.96599 0.96939 0.99417 1.21396 1.02451 0.94400 0.96289 1.21443 0.99175 0.98127 0.96056 1.21581 1.03144 0.95168 0.94302 1.21499 0.93912 0.97502 0.86763 0.97290 1.58916 1.61992 1.01388 1.02112 1.21895 0.94892 0.95960 0.94316 1.22024 1.02218 0.99636 0.95268 1.22313 0.99941 0.87807 0.96461 1.59686 1.06264 1.20755 1.46206 1.21895 0.97770 0.98782 0.87961 1.21723 0.95760 0.92868 0.98756 0.93041 0.92974 0.95580 0.90247 0.94399 0.93121 0.93698 0.89742 0.94073 0.96023 0.90576 0.89991 0.92150 0.91555 0.92306 0.84780 0.89957 0.91112 0.88708 0.98161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.86 21.04 25.72 -169.99 -4.37 16.67 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.37 6.83 56.52 0.39 -5.98 16 7 C -0.47 -12.11 6.58 -34.44 -0.23 -12.34 16 8 H 0.08 2.28 6.27 -52.49 -0.33 1.95 16 9 C 0.01 0.25 1.24 -91.77 -0.11 0.14 16 10 H 0.03 0.68 3.63 -51.93 -0.19 0.49 16 11 C -0.11 -2.22 5.44 -26.73 -0.15 -2.36 16 12 C -0.11 -2.02 5.70 -26.73 -0.15 -2.17 16 13 C -0.11 -1.83 5.92 -26.72 -0.16 -1.99 16 14 C -0.10 -1.89 4.87 -26.73 -0.13 -2.02 16 15 C 0.11 2.15 1.67 -67.71 -0.11 2.03 16 16 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 17 N -0.52 -9.78 3.56 -231.74 -0.83 -10.60 16 18 C 0.06 0.88 5.16 -4.37 -0.02 0.86 16 19 C -0.15 -2.16 5.36 -27.47 -0.15 -2.31 16 20 C 0.06 0.85 6.49 -2.82 -0.02 0.83 16 21 N -0.70 -10.34 6.53 -113.50 -0.74 -11.08 16 22 C 0.07 1.14 6.31 -4.44 -0.03 1.11 16 23 C 0.04 0.76 4.56 -6.75 -0.03 0.73 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.68 7.17 -51.93 -0.37 1.31 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.76 6.30 -51.93 -0.33 1.43 16 32 H 0.04 0.66 6.02 -51.93 -0.31 0.35 16 33 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 34 H 0.08 1.14 5.55 -51.93 -0.29 0.86 16 35 H 0.08 1.38 7.23 -51.93 -0.38 1.01 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.33 4.68 7.51 -39.29 -0.29 4.39 16 40 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.08 3.84 -51.92 -0.20 1.88 16 43 H 0.00 0.01 7.57 -51.92 -0.39 -0.38 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -27.55 300.48 -9.21 -36.76 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.19 Total: 5.57 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.38 Total: -15.67 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.79 Total: -47.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.37 Total: 16.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.55 -9.21 -36.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.928 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds