Wall clock time and date at job start Mon Mar 30 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00479 * 2 1 4 4 C 1.50704 * 109.46783 * 269.99905 * 3 2 1 5 5 H 1.07992 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99661 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99445 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46977 * 90.00321 * 8 6 4 10 10 H 1.48500 * 109.46990 * 209.99611 * 8 6 4 11 11 H 1.48493 * 109.47525 * 330.00203 * 8 6 4 12 12 C 1.34779 * 119.99376 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99651 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00090 * 0.02562 * 12 2 1 15 15 H 1.08993 * 110.32781 * 320.77614 * 14 12 2 16 16 N 1.49626 * 110.36422 * 198.54214 * 14 12 2 17 17 C 1.50112 * 107.75293 * 234.09432 * 16 14 12 18 18 C 1.50924 * 102.23060 * 334.87762 * 17 16 14 19 19 H 1.09003 * 109.46872 * 290.45413 * 18 17 16 20 20 C 1.50308 * 125.69701 * 155.99392 * 18 17 16 21 21 C 1.55938 * 104.15926 * 214.79835 * 20 18 17 22 22 C 1.56402 * 105.79529 * 7.51666 * 21 20 18 23 23 C 1.50358 * 110.36852 * 83.13651 * 14 12 2 24 24 H 1.09001 * 110.05518 * 37.76653 * 23 14 12 25 25 H 1.09004 * 109.47192 * 270.01123 * 1 2 3 26 26 H 1.09008 * 109.46555 * 30.00258 * 1 2 3 27 27 H 1.08992 * 109.47623 * 150.00112 * 1 2 3 28 28 H 1.08998 * 109.47082 * 29.99430 * 3 2 1 29 29 H 1.08998 * 109.47471 * 149.99579 * 3 2 1 30 30 H 0.97005 * 119.99519 * 179.97438 * 7 6 4 31 31 H 1.00901 * 111.00031 * 355.82255 * 16 14 12 32 32 H 1.08998 * 110.85346 * 93.06339 * 17 16 14 33 33 H 1.08997 * 110.85062 * 216.69781 * 17 16 14 34 34 H 1.09005 * 110.48984 * 333.46122 * 20 18 17 35 35 H 1.08995 * 110.49419 * 95.99569 * 20 18 17 36 36 H 1.08998 * 110.18728 * 126.59578 * 21 20 18 37 37 H 1.08997 * 110.18662 * 248.35879 * 21 20 18 38 38 H 1.09000 * 110.99856 * 266.92619 * 22 21 20 39 39 H 1.09004 * 110.99928 * 143.08646 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7035 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5527 3.6183 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.3081 4.2588 -3.9016 10 1 4.6982 4.1999 -3.4963 11 1 3.5562 2.2192 -4.3045 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0001 14 6 1.3852 -2.4723 0.0005 15 1 0.5099 -2.4041 0.6465 16 7 2.2763 -3.5882 0.4472 17 6 2.2357 -4.6563 -0.6068 18 6 0.8963 -4.4119 -1.2581 19 1 0.1002 -4.6814 -0.5641 20 6 0.5154 -4.8102 -2.6565 21 6 -0.4303 -3.6663 -3.1348 22 6 -0.3718 -2.5713 -2.0195 23 6 0.9781 -2.8416 -1.3990 24 1 1.7666 -2.5709 -2.1013 25 1 -0.3634 0.0002 1.0277 26 1 -0.3633 0.8901 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6086 2.0283 0.5137 29 1 3.1500 1.1383 0.5139 30 1 4.0296 4.4442 -0.8506 31 1 3.2194 -3.2610 0.5942 32 1 3.0457 -4.5246 -1.3241 33 1 2.2725 -5.6479 -0.1558 34 1 1.3995 -4.8650 -3.2919 35 1 -0.0097 -5.7653 -2.6516 36 1 -0.0776 -3.2578 -4.0817 37 1 -1.4483 -4.0405 -3.2430 38 1 -1.1713 -2.7117 -1.2920 39 1 -0.4100 -1.5713 -2.4516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299895971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:52 Heat of formation + Delta-G solvation = -24.412087 kcal Electronic energy + Delta-G solvation = -19604.271948 eV Core-core repulsion = 16739.765961 eV Total energy + Delta-G solvation = -2864.505986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69923 -38.29656 -35.15495 -34.30810 -32.66679 -30.61994 -27.92765 -27.71373 -26.78952 -25.44869 -23.24042 -21.59339 -20.42966 -20.10727 -18.22854 -16.85982 -16.51831 -15.81977 -15.56700 -14.98864 -14.56802 -14.44632 -13.96645 -13.81518 -13.33610 -12.72615 -12.44453 -12.33675 -12.15399 -12.09554 -11.86981 -11.54535 -11.27461 -11.06318 -10.95053 -10.89531 -10.70740 -10.57422 -10.46927 -10.24950 -10.16360 -9.64664 -8.99521 -8.45688 -8.37548 -7.66570 -6.06023 -4.10891 3.27725 3.30894 3.35065 3.39649 3.86672 3.97561 4.32361 4.42345 4.66545 4.82999 5.03299 5.07541 5.21178 5.27842 5.32982 5.40434 5.51628 5.59766 5.66795 5.69754 5.78705 5.81153 5.92858 5.94210 5.99160 6.03203 6.15092 6.22817 6.32119 6.37519 6.70905 7.04386 7.40995 7.46112 7.53475 7.90024 8.21407 8.38530 8.86503 9.03314 9.54013 11.02100 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.006432 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.428480 B = 4352.090844 C = 4732.427747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.594 5.594 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.498 3.502 13 O -0.546 6.546 14 C 0.070 3.930 15 H 0.101 0.899 16 N -0.664 5.664 17 C 0.057 3.943 18 C -0.116 4.116 19 H 0.082 0.918 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.354 0.646 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 -14.712 -1.932 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.325 5.325 3 C 0.124 3.876 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.283 3.717 13 O -0.424 6.424 14 C -0.043 4.043 15 H 0.118 0.882 16 N -0.297 5.297 17 C -0.072 4.072 18 C -0.135 4.135 19 H 0.100 0.900 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.473 -14.804 -1.408 17.632 hybrid contribution 0.689 0.955 -1.677 2.049 sum -8.784 -13.849 -3.085 16.687 Atomic orbital electron populations 1.21837 0.81433 1.03021 1.00677 1.48071 1.06224 1.07662 1.70562 1.19316 0.92591 0.78117 0.97533 1.21410 1.36578 1.06243 0.92221 0.92554 1.24939 0.95360 0.96400 0.97414 1.69933 1.38365 1.14297 1.30708 0.86505 0.77733 0.78575 0.84661 1.20592 1.21036 1.19969 1.20616 0.88187 0.85637 0.77275 1.90638 1.13936 1.86850 1.50952 1.21603 0.97121 0.89627 0.95912 0.88165 1.63690 1.16187 1.08605 1.41224 1.22179 0.95837 0.96010 0.93170 1.22150 0.98337 0.95870 0.97138 0.89991 1.21473 0.99488 0.98188 0.95151 1.22948 0.99379 0.94989 0.98537 1.21865 0.95640 0.99261 0.97745 1.22330 0.99246 0.96535 0.95891 0.90222 0.93656 0.90737 0.91677 0.94909 0.93850 0.92690 0.82595 0.93429 0.90085 0.91645 0.91575 0.91526 0.91583 0.90979 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.92 59.85 0.59 1.80 16 2 N -0.59 -12.82 2.86 -182.95 -0.52 -13.34 16 3 C 0.24 6.47 5.16 -5.20 -0.03 6.45 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.50 10.61 6.85 -10.99 -0.08 10.53 16 13 O -0.55 -13.88 15.17 5.55 0.08 -13.80 16 14 C 0.07 1.13 2.79 -68.66 -0.19 0.94 16 15 H 0.10 1.48 7.21 -51.93 -0.37 1.10 16 16 N -0.66 -10.37 7.53 -105.97 -0.80 -11.17 16 17 C 0.06 0.73 7.44 -3.06 -0.02 0.70 16 18 C -0.12 -1.35 2.81 -90.33 -0.25 -1.60 16 19 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.10 -1.04 6.69 -26.50 -0.18 -1.22 16 21 C -0.12 -1.20 6.95 -23.33 -0.16 -1.36 16 22 C -0.11 -1.24 4.83 -25.90 -0.13 -1.37 16 23 C -0.12 -1.70 1.98 -90.27 -0.18 -1.88 16 24 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.23 8.07 -51.92 -0.42 0.81 16 27 H 0.06 0.88 3.65 -51.93 -0.19 0.69 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.35 6.20 7.24 -39.29 -0.28 5.91 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.73 7.96 -51.93 -0.41 0.31 16 39 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -32.21 306.57 -8.17 -40.37 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.23 Total: 3.09 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.04 Total: -0.69 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.58 Total: -50.54 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.21 -8.17 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299895971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.963 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds