Wall clock time and date at job start Mon Mar 30 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00479 * 2 1 4 4 C 1.50704 * 109.46783 * 269.99905 * 3 2 1 5 5 H 1.07992 * 120.00094 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99661 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99445 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46977 * 90.00321 * 8 6 4 10 10 H 1.48500 * 109.46990 * 209.99611 * 8 6 4 11 11 H 1.48493 * 109.47525 * 330.00203 * 8 6 4 12 12 C 1.34779 * 119.99376 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99651 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00090 * 0.02562 * 12 2 1 15 15 H 1.08993 * 110.32781 * 320.77614 * 14 12 2 16 16 N 1.49626 * 110.36422 * 198.54214 * 14 12 2 17 17 C 1.50112 * 107.75293 * 234.09432 * 16 14 12 18 18 C 1.50924 * 102.23060 * 334.87762 * 17 16 14 19 19 H 1.09003 * 109.46872 * 290.45413 * 18 17 16 20 20 C 1.50308 * 125.69701 * 155.99392 * 18 17 16 21 21 C 1.55938 * 104.15926 * 214.79835 * 20 18 17 22 22 C 1.56402 * 105.79529 * 7.51666 * 21 20 18 23 23 C 1.50358 * 110.36852 * 83.13651 * 14 12 2 24 24 H 1.09001 * 110.05518 * 37.76653 * 23 14 12 25 25 H 1.09004 * 109.47192 * 270.01123 * 1 2 3 26 26 H 1.09008 * 109.46555 * 30.00258 * 1 2 3 27 27 H 1.08992 * 109.47623 * 150.00112 * 1 2 3 28 28 H 1.08998 * 109.47082 * 29.99430 * 3 2 1 29 29 H 1.08998 * 109.47471 * 149.99579 * 3 2 1 30 30 H 0.97005 * 119.99519 * 179.97438 * 7 6 4 31 31 H 1.00901 * 111.00031 * 355.82255 * 16 14 12 32 32 H 1.08998 * 110.85346 * 93.06339 * 17 16 14 33 33 H 1.08997 * 110.85062 * 216.69781 * 17 16 14 34 34 H 1.09005 * 110.48984 * 333.46122 * 20 18 17 35 35 H 1.08995 * 110.49419 * 95.99569 * 20 18 17 36 36 H 1.08998 * 110.18728 * 126.59578 * 21 20 18 37 37 H 1.08997 * 110.18662 * 248.35879 * 21 20 18 38 38 H 1.09000 * 110.99856 * 266.92619 * 22 21 20 39 39 H 1.09004 * 110.99928 * 143.08646 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7035 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5527 3.6183 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.3081 4.2588 -3.9016 10 1 4.6982 4.1999 -3.4963 11 1 3.5562 2.2192 -4.3045 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0001 14 6 1.3852 -2.4723 0.0005 15 1 0.5099 -2.4041 0.6465 16 7 2.2763 -3.5882 0.4472 17 6 2.2357 -4.6563 -0.6068 18 6 0.8963 -4.4119 -1.2581 19 1 0.1002 -4.6814 -0.5641 20 6 0.5154 -4.8102 -2.6565 21 6 -0.4303 -3.6663 -3.1348 22 6 -0.3718 -2.5713 -2.0195 23 6 0.9781 -2.8416 -1.3990 24 1 1.7666 -2.5709 -2.1013 25 1 -0.3634 0.0002 1.0277 26 1 -0.3633 0.8901 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6086 2.0283 0.5137 29 1 3.1500 1.1383 0.5139 30 1 4.0296 4.4442 -0.8506 31 1 3.2194 -3.2610 0.5942 32 1 3.0457 -4.5246 -1.3241 33 1 2.2725 -5.6479 -0.1558 34 1 1.3995 -4.8650 -3.2919 35 1 -0.0097 -5.7653 -2.6516 36 1 -0.0776 -3.2578 -4.0817 37 1 -1.4483 -4.0405 -3.2430 38 1 -1.1713 -2.7117 -1.2920 39 1 -0.4100 -1.5713 -2.4516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299895971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:52 Heat of formation + Delta-G solvation = -47.439427 kcal Electronic energy + Delta-G solvation = -19605.270488 eV Core-core repulsion = 16739.765961 eV Total energy + Delta-G solvation = -2865.504527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.94557 -39.81186 -36.83170 -35.52334 -34.79684 -31.86768 -29.70517 -28.79283 -28.03392 -26.97133 -25.08469 -22.84088 -21.59191 -21.15172 -19.63889 -18.73924 -18.34421 -17.35591 -16.74650 -16.61753 -16.11250 -15.59084 -15.46903 -15.16694 -14.39210 -14.35050 -14.02865 -13.84470 -13.53782 -13.41852 -13.27067 -13.04461 -12.87068 -12.65114 -12.53205 -12.26413 -11.97733 -11.89463 -11.76127 -11.72379 -11.35708 -11.25508 -10.68379 -10.59131 -9.65910 -9.48327 -8.26733 -6.41925 1.32484 1.35704 1.45725 1.67523 2.22081 2.38607 2.97089 3.02657 3.12010 3.54185 3.83747 3.84753 4.02335 4.22718 4.33397 4.40035 4.43317 4.56809 4.64202 4.67218 4.71314 4.80771 4.86558 4.93078 4.95294 5.04579 5.09602 5.16054 5.19271 5.23148 5.37936 5.50302 5.51685 5.57313 5.77678 6.00692 6.10564 6.62718 6.70460 7.20793 7.36249 8.80615 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.006432 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.428480 B = 4352.090844 C = 4732.427747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.600 5.600 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.487 3.513 13 O -0.600 6.600 14 C 0.082 3.918 15 H 0.125 0.875 16 N -0.668 5.668 17 C 0.052 3.948 18 C -0.099 4.099 19 H 0.099 0.901 20 C -0.102 4.102 21 C -0.117 4.117 22 C -0.107 4.107 23 C -0.126 4.126 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.026 0.974 29 H -0.004 1.004 30 H 0.268 0.732 31 H 0.340 0.660 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -16.391 -3.118 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.331 5.331 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.275 3.725 13 O -0.482 6.482 14 C -0.030 4.030 15 H 0.143 0.857 16 N -0.300 5.300 17 C -0.076 4.076 18 C -0.118 4.118 19 H 0.117 0.883 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.031 -16.503 -2.593 20.587 hybrid contribution 1.495 1.460 -1.249 2.434 sum -10.536 -15.044 -3.842 18.764 Atomic orbital electron populations 1.22133 0.77903 1.04357 1.02849 1.48091 1.08421 1.06190 1.70353 1.18800 0.91078 0.80343 0.96188 1.21645 1.37089 1.06578 0.92812 0.93076 1.25873 0.94813 0.96369 1.02079 1.70052 1.38817 1.14763 1.33064 0.85411 0.78263 0.78185 0.78929 1.18493 1.20488 1.19981 1.21662 0.87949 0.87192 0.75728 1.90597 1.16563 1.87798 1.53197 1.21642 0.96904 0.86563 0.97937 0.85742 1.63835 1.15157 1.08688 1.42276 1.22342 0.96451 0.96118 0.92672 1.22164 0.97857 0.93150 0.98619 0.88299 1.21506 0.99537 0.99437 0.93543 1.22935 1.00817 0.94253 0.97405 1.21938 0.94548 0.99329 0.98685 1.22327 0.99649 0.99029 0.93585 0.94010 0.90959 0.91137 0.88659 0.95588 0.98563 0.92303 0.84214 0.94690 0.87661 0.92439 0.88890 0.92279 0.88987 0.88377 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.16 9.92 127.77 1.27 3.43 16 2 N -0.60 -26.53 2.86 -851.13 -2.43 -28.96 16 3 C 0.26 14.33 5.16 85.64 0.44 14.78 16 4 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.46 5.46 84.66 0.46 0.92 16 7 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 8 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 12 C 0.49 21.41 6.85 87.66 0.60 22.01 16 13 O -0.60 -32.40 15.17 -3.04 -0.05 -32.44 16 14 C 0.08 2.58 2.79 42.78 0.12 2.70 16 15 H 0.13 3.32 7.21 -2.39 -0.02 3.30 16 16 N -0.67 -20.51 7.53 -489.19 -3.68 -24.19 16 17 C 0.05 1.26 7.44 85.00 0.63 1.89 16 18 C -0.10 -2.01 2.81 -10.61 -0.03 -2.04 16 19 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.10 -1.68 6.69 30.74 0.21 -1.47 16 21 C -0.12 -1.92 6.95 32.80 0.23 -1.69 16 22 C -0.11 -2.18 4.83 31.13 0.15 -2.03 16 23 C -0.13 -3.38 1.98 -10.56 -0.02 -3.41 16 24 H 0.04 1.44 7.96 -2.39 -0.02 1.42 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 27 H 0.10 2.36 3.65 -2.39 -0.01 2.35 16 28 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 29 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 30 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 31 H 0.34 12.31 7.24 -89.69 -0.65 11.66 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.51 7.96 -2.39 -0.02 1.49 16 39 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 Total: -1.00 -73.74 306.57 0.83 -72.91 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.38 Total: 18.46 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.30 Total: 3.34 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -5.83 Total: -109.76 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.44 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.74 0.83 -72.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299895971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.469 kcal (2) G-P(sol) polarization free energy of solvation -73.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds