Wall clock time and date at job start Mon Mar 30 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47744 * 2 1 4 4 N 1.46499 * 109.47468 * 180.02562 * 3 2 1 5 5 N 1.40298 * 126.83675 * 268.85675 * 4 3 2 6 6 N 1.28731 * 108.18844 * 179.97438 * 5 4 3 7 7 C 1.33300 * 109.98737 * 359.75298 * 6 5 4 8 8 C 1.35861 * 108.85318 * 0.40383 * 7 6 5 9 9 N 1.39282 * 126.67514 * 179.86670 * 8 7 6 10 10 C 1.46898 * 111.00199 * 254.64775 * 9 8 7 11 11 C 1.50703 * 109.47204 * 66.58198 * 10 9 8 12 12 H 1.07998 * 120.00157 * 357.40720 * 11 10 9 13 13 C 1.37877 * 120.00138 * 177.40105 * 11 10 9 14 14 N 1.31522 * 119.99946 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00196 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47377 * 90.00116 * 15 13 11 17 17 H 1.48504 * 109.47333 * 210.00086 * 15 13 11 18 18 H 1.48501 * 109.47194 * 329.99640 * 15 13 11 19 19 C 1.46898 * 111.00095 * 18.59955 * 9 8 7 20 20 C 1.52998 * 109.47518 * 186.72731 * 19 9 8 21 21 C 1.53002 * 109.46884 * 66.72923 * 19 9 8 22 22 H 1.09000 * 109.46894 * 59.99998 * 1 2 3 23 23 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46715 * 300.00445 * 1 2 3 25 25 H 1.09009 * 109.46921 * 239.99666 * 2 1 3 26 26 H 1.09007 * 109.47453 * 120.00357 * 2 1 3 27 27 H 1.08996 * 109.46925 * 59.99808 * 3 2 1 28 28 H 1.09000 * 109.46927 * 299.99982 * 3 2 1 29 29 H 1.08000 * 125.57229 * 180.25180 * 7 6 5 30 30 H 1.09001 * 109.47486 * 186.58383 * 10 9 8 31 31 H 1.09000 * 109.47220 * 306.58791 * 10 9 8 32 32 H 0.96993 * 120.00068 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47395 * 306.73180 * 19 9 8 34 34 H 1.09000 * 109.46754 * 305.83455 * 20 19 9 35 35 H 1.08992 * 109.47627 * 185.83145 * 20 19 9 36 36 H 1.08997 * 109.46693 * 65.82485 * 20 19 9 37 37 H 1.08999 * 109.47170 * 177.32685 * 21 19 9 38 38 H 1.09000 * 109.46948 * 297.32136 * 21 19 9 39 39 H 1.08995 * 109.47349 * 57.32275 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 7 4.3468 1.4645 1.1217 6 7 5.5663 1.4558 0.7096 7 6 5.5969 1.4236 -0.6226 8 6 4.3216 1.4201 -1.0911 9 7 3.9259 1.3931 -2.4262 10 6 3.4352 2.7091 -2.8567 11 6 4.5740 3.6960 -2.8521 12 1 5.5541 3.3881 -2.5189 13 6 4.3648 4.9921 -3.2734 14 7 3.1712 5.3672 -3.6789 15 14 5.7766 6.2152 -3.2684 16 1 6.4783 6.1667 -4.5763 17 1 5.2454 7.5834 -3.0422 18 1 6.7284 5.8681 -2.1827 19 6 5.0202 0.9309 -3.2904 20 6 4.6071 1.0732 -4.7567 21 6 5.3247 -0.5374 -2.9865 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6769 1.9563 -0.8900 29 1 6.4895 1.4060 -1.2303 30 1 3.0249 2.6324 -3.8636 31 1 2.6576 3.0485 -2.1724 32 1 3.0240 6.2790 -3.9749 33 1 5.9097 1.5326 -3.1035 34 1 3.6614 0.5562 -4.9195 35 1 5.3749 0.6356 -5.3946 36 1 4.4905 2.1291 -5.0004 37 1 6.1040 -0.8938 -3.6601 38 1 5.6647 -0.6320 -1.9553 39 1 4.4224 -1.1323 -3.1277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304153340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:12 Heat of formation + Delta-G solvation = 71.445217 kcal Electronic energy + Delta-G solvation = -19815.878953 eV Core-core repulsion = 16987.822403 eV Total energy + Delta-G solvation = -2828.056550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.97050 -39.30512 -36.76710 -34.88126 -33.55225 -32.40531 -30.98396 -28.47476 -27.65696 -27.54859 -24.68192 -23.26215 -23.11910 -21.82255 -20.54923 -18.84920 -17.97886 -17.33464 -16.82393 -16.35714 -16.19489 -15.69639 -15.24627 -15.01706 -14.52169 -14.21520 -13.74409 -13.46981 -13.42501 -13.07824 -13.03799 -12.90287 -12.76954 -12.65597 -12.44790 -12.42126 -12.33782 -12.04980 -11.92877 -11.78221 -11.64416 -11.62846 -10.84955 -10.62730 -10.17932 -9.08434 -8.22592 -6.37287 0.49578 1.29287 1.33972 1.37559 1.45781 1.67724 2.34877 2.99192 3.07398 3.59452 3.85825 3.96681 4.09606 4.16090 4.23053 4.23708 4.29854 4.48095 4.53515 4.67079 4.83369 4.89700 4.97526 4.99923 5.05817 5.09108 5.13671 5.17453 5.25938 5.30388 5.34167 5.43028 5.44702 5.63465 5.70991 5.88068 6.08881 6.37636 6.76138 7.32137 7.33720 8.81381 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.008151 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.328774 B = 3434.305546 C = 3582.000394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.121 3.879 4 N -0.366 5.366 5 N -0.122 5.122 6 N -0.255 5.255 7 C -0.130 4.130 8 C 0.287 3.713 9 N -0.470 5.470 10 C 0.209 3.791 11 C -0.552 4.552 12 H 0.058 0.942 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.944 3.056 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.278 1.278 19 C 0.088 3.912 20 C -0.135 4.135 21 C -0.139 4.139 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.185 0.815 30 H 0.044 0.956 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -10.766 0.574 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.000 4.000 4 N -0.156 5.156 5 N -0.099 5.099 6 N -0.122 5.122 7 C -0.292 4.292 8 C 0.056 3.944 9 N -0.192 5.192 10 C 0.085 3.915 11 C -0.591 4.591 12 H 0.076 0.924 13 C -0.176 4.176 14 N -0.556 5.556 15 Si 0.770 3.230 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.019 4.019 20 C -0.192 4.192 21 C -0.197 4.197 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.202 0.798 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.823 -10.905 2.009 11.442 hybrid contribution 1.013 1.707 -1.024 2.234 sum -1.810 -9.198 0.986 9.426 Atomic orbital electron populations 1.21655 0.92144 1.03316 1.02767 1.21767 0.98285 0.93459 1.02598 1.22179 0.72341 1.00551 1.04914 1.50626 1.08705 1.51960 1.04315 1.81744 0.93709 1.28187 1.06295 1.73943 1.13761 1.11998 1.12485 1.23094 0.97599 1.17425 0.91087 1.20131 0.89562 0.96467 0.88253 1.59393 1.35251 1.28279 0.96295 1.19612 0.94304 0.81442 0.96177 1.21855 0.96988 0.96356 1.43913 0.92415 1.25559 0.97540 0.99852 0.94653 1.70003 1.22486 1.19032 1.44080 0.85765 0.79985 0.78533 0.78746 1.19141 1.21118 1.20298 1.21652 0.91225 0.96092 0.92936 1.21775 1.01960 1.01997 0.93497 1.21894 1.02333 0.93889 1.01567 0.92183 0.90585 0.91441 0.91849 0.91583 0.87789 0.89104 0.79814 0.93760 0.97648 0.92556 0.93575 0.92138 0.90043 0.93501 0.89622 0.93652 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.12 -3.04 6.26 30.59 0.19 -2.84 16 3 C 0.12 3.76 6.45 86.38 0.56 4.32 16 4 N -0.37 -14.18 3.69 -344.57 -1.27 -15.45 16 5 N -0.12 -5.09 13.81 37.02 0.51 -4.58 16 6 N -0.25 -10.91 12.32 -58.22 -0.72 -11.63 16 7 C -0.13 -5.26 8.81 83.92 0.74 -4.52 16 8 C 0.29 11.51 4.87 131.02 0.64 12.15 16 9 N -0.47 -18.16 4.64 -681.64 -3.16 -21.32 16 10 C 0.21 9.71 4.43 85.56 0.38 10.09 16 11 C -0.55 -28.27 7.32 25.60 0.19 -28.08 16 12 H 0.06 2.98 5.89 -2.91 -0.02 2.96 16 13 C 0.02 1.31 5.46 84.65 0.46 1.77 16 14 N -0.92 -50.86 13.29 21.45 0.28 -50.57 16 15 Si 0.94 42.82 29.54 68.60 2.03 44.84 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.09 2.96 1.75 44.92 0.08 3.04 16 20 C -0.13 -4.23 8.34 71.98 0.60 -3.63 16 21 C -0.14 -3.73 9.06 71.98 0.65 -3.08 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.09 3.04 6.39 -2.39 -0.02 3.02 16 29 H 0.18 6.79 6.86 -2.91 -0.02 6.77 16 30 H 0.04 2.16 6.49 -2.39 -0.02 2.15 16 31 H 0.01 0.28 6.43 -2.39 -0.02 0.26 16 32 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.05 1.70 5.39 -2.39 -0.01 1.69 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.79 6.29 -2.39 -0.02 1.77 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.30 6.39 -2.39 -0.02 1.29 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -60.34 311.12 3.90 -56.44 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.03 Total: 14.97 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 5.20 Total: -12.70 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.35 Total: -103.56 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -60.34 3.90 -56.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304153340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.886 kcal (2) G-P(sol) polarization free energy of solvation -60.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds