Wall clock time and date at job start Mon Mar 30 2020 04:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.46827 * 2 1 4 4 N 1.40299 * 126.83961 * 276.11114 * 3 2 1 5 5 N 1.28728 * 108.19067 * 180.02562 * 4 3 2 6 6 C 1.33294 * 109.98829 * 359.97438 * 5 4 3 7 7 C 1.35867 * 108.85656 * 0.02562 * 6 5 4 8 8 N 1.39276 * 126.67851 * 180.25773 * 7 6 5 9 9 C 1.46901 * 110.99801 * 111.25501 * 8 7 6 10 10 C 1.50700 * 109.47454 * 304.35032 * 9 8 7 11 11 H 1.07999 * 119.99644 * 4.70677 * 10 9 8 12 12 C 1.37870 * 120.00337 * 184.70327 * 10 9 8 13 13 N 1.31518 * 120.00090 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00067 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47187 * 60.00180 * 14 12 10 16 16 H 1.48506 * 109.47031 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47401 * 300.00174 * 14 12 10 18 18 C 1.46902 * 110.99889 * 347.30450 * 8 7 6 19 19 C 1.52997 * 109.46737 * 284.58682 * 18 8 7 20 20 C 1.53000 * 109.46932 * 173.91970 * 19 18 8 21 21 C 1.52998 * 109.47850 * 293.91871 * 19 18 8 22 22 H 1.09008 * 109.46995 * 186.26373 * 1 2 3 23 23 H 1.08999 * 109.47666 * 306.26297 * 1 2 3 24 24 H 1.09000 * 109.47521 * 66.26914 * 1 2 3 25 25 H 1.08997 * 109.47339 * 240.00474 * 2 1 3 26 26 H 1.08995 * 109.47293 * 119.99544 * 2 1 3 27 27 H 1.08000 * 125.57637 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46985 * 64.35224 * 9 8 7 29 29 H 1.09002 * 109.46808 * 184.35097 * 9 8 7 30 30 H 0.96995 * 120.00557 * 179.97438 * 13 12 10 31 31 H 1.08992 * 109.47269 * 44.58725 * 18 8 7 32 32 H 1.08999 * 109.46715 * 164.59274 * 18 8 7 33 33 H 1.09005 * 109.47331 * 53.92110 * 19 18 8 34 34 H 1.08996 * 109.47433 * 60.00310 * 20 19 18 35 35 H 1.09003 * 109.47327 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47336 * 299.99909 * 20 19 18 37 37 H 1.08997 * 109.47463 * 185.02211 * 21 19 18 38 38 H 1.08999 * 109.46864 * 305.02804 * 21 19 18 39 39 H 1.09010 * 109.46824 * 65.01800 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1859 2.2142 -1.1165 5 7 2.6342 3.3494 -0.7072 6 6 2.7782 3.3315 0.6178 7 6 2.4001 2.1127 1.0842 8 7 2.3976 1.6945 2.4127 9 6 1.0254 1.5135 2.9049 10 6 0.2489 2.7902 2.7094 11 1 0.7027 3.6248 2.1957 12 6 -1.0406 2.8927 3.1862 13 7 -1.5931 1.8765 3.8122 14 14 -2.0027 4.4755 2.9445 15 1 -2.1336 4.7585 1.4926 16 1 -3.3533 4.3305 3.5448 17 1 -1.2860 5.5962 3.6045 18 6 3.1418 2.6342 3.2619 19 6 4.6434 2.4423 3.0403 20 6 5.4137 3.5190 3.8073 21 6 5.0609 1.0596 3.5449 22 1 -0.3633 -1.0216 0.1121 23 1 -0.3634 0.6078 0.8286 24 1 -0.3634 0.4136 -0.9407 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.1367 4.1518 1.2220 28 1 0.5442 0.7072 2.3513 29 1 1.0500 1.2619 3.9652 30 1 -2.5001 1.9487 4.1480 31 1 2.8640 3.6559 3.0032 32 1 2.9020 2.4463 4.3084 33 1 4.8671 2.5237 1.9766 34 1 5.1901 3.4377 4.8710 35 1 6.4835 3.3826 3.6491 36 1 5.1164 4.5042 3.4478 37 1 6.1434 0.9569 3.4695 38 1 4.7566 0.9454 4.5853 39 1 4.5799 0.2914 2.9393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304178752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:37 Heat of formation + Delta-G solvation = 86.334860 kcal Electronic energy + Delta-G solvation = -19918.503767 eV Core-core repulsion = 17091.092880 eV Total energy + Delta-G solvation = -2827.410887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33199 -37.65906 -34.97230 -34.01459 -32.55319 -29.84698 -28.86593 -27.14373 -26.82681 -25.06406 -23.80790 -22.44103 -20.96011 -20.13681 -19.17643 -17.15574 -16.24837 -15.43181 -15.15967 -14.73461 -14.45528 -14.25267 -14.03095 -13.47636 -13.03835 -12.57206 -12.42004 -12.32948 -12.05518 -11.84334 -11.80618 -11.42378 -11.23101 -11.01200 -10.89592 -10.81176 -10.71804 -10.43303 -10.29436 -10.22842 -10.04633 -9.93242 -9.34634 -8.66035 -8.58902 -7.37034 -6.23355 -4.32229 2.17034 2.85590 3.22015 3.26288 3.31437 3.36432 4.28973 4.53505 5.02071 5.09152 5.16055 5.25970 5.42192 5.44816 5.58079 5.58803 5.75980 5.83742 5.89400 5.97815 5.98743 6.01583 6.10504 6.17162 6.32493 6.35062 6.40845 6.60559 6.62645 6.67568 6.87891 6.93234 7.11974 7.22911 7.56326 7.69832 7.88956 8.03730 8.74756 9.00402 9.36586 10.82388 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.009818 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.252370 B = 2851.096269 C = 3554.152426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.132 3.868 3 N -0.368 5.368 4 N -0.110 5.110 5 N -0.236 5.236 6 C -0.136 4.136 7 C 0.304 3.696 8 N -0.480 5.480 9 C 0.186 3.814 10 C -0.556 4.556 11 H 0.063 0.937 12 C 0.072 3.928 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.076 3.924 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.134 4.134 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.172 0.828 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -2.974 -0.315 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.010 3.990 3 N -0.159 5.159 4 N -0.088 5.088 5 N -0.104 5.104 6 C -0.298 4.298 7 C 0.073 3.927 8 N -0.201 5.201 9 C 0.063 3.937 10 C -0.595 4.595 11 H 0.081 0.919 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.052 4.052 19 C -0.119 4.119 20 C -0.202 4.202 21 C -0.192 4.192 22 H 0.089 0.911 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.189 0.811 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.675 -3.470 -1.718 9.500 hybrid contribution -1.105 1.318 1.089 2.036 sum 7.570 -2.152 -0.630 7.895 Atomic orbital electron populations 1.22303 0.93668 1.03136 1.04403 1.21669 0.95976 0.77600 1.03735 1.50308 1.47618 1.12800 1.05169 1.81797 1.24600 0.96352 1.06029 1.73935 1.10289 1.14246 1.11973 1.22711 1.18037 0.97355 0.91666 1.19975 0.94878 0.89790 0.88060 1.59219 1.19210 1.44931 0.96702 1.20151 0.79202 0.97421 0.96917 1.21675 0.99365 1.00184 1.38248 0.91935 1.24878 0.97457 0.96467 0.94363 1.69905 1.14982 1.30421 1.37212 0.86671 0.79098 0.83763 0.78769 1.20108 1.21101 1.19956 1.22131 0.91192 0.94729 0.97137 1.21226 0.94881 0.95469 1.00300 1.21784 0.99474 0.98574 1.00338 1.21692 0.99482 0.96922 1.01064 0.91128 0.89093 0.92309 0.89524 0.88540 0.81116 0.94065 0.93442 0.92494 0.92765 0.89915 0.91320 0.92685 0.92978 0.92734 0.93910 0.93027 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.88 37.15 0.37 -2.57 16 2 C 0.13 2.12 6.47 -4.04 -0.03 2.09 16 3 N -0.37 -7.25 3.69 -60.26 -0.22 -7.47 16 4 N -0.11 -2.34 13.81 60.35 0.83 -1.50 16 5 N -0.24 -5.11 12.32 30.25 0.37 -4.74 16 6 C -0.14 -2.75 9.08 -17.77 -0.16 -2.91 16 7 C 0.30 6.09 4.59 -152.54 -0.70 5.39 16 8 N -0.48 -9.18 4.25 -174.37 -0.74 -9.92 16 9 C 0.19 4.20 4.96 -4.98 -0.02 4.18 16 10 C -0.56 -14.12 7.96 -34.44 -0.27 -14.39 16 11 H 0.06 1.64 6.24 -52.49 -0.33 1.31 16 12 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 13 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 C 0.08 1.29 3.48 -3.82 -0.01 1.27 16 19 C -0.10 -1.40 2.87 -90.62 -0.26 -1.66 16 20 C -0.14 -1.71 9.19 37.16 0.34 -1.36 16 21 C -0.13 -1.77 9.03 37.16 0.34 -1.43 16 22 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 23 H 0.09 1.89 6.13 -51.93 -0.32 1.58 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.46 7.97 -51.93 -0.41 1.05 16 27 H 0.17 3.13 6.70 -52.49 -0.35 2.78 16 28 H 0.04 0.97 4.79 -51.93 -0.25 0.72 16 29 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 0.97 5.96 -51.93 -0.31 0.66 16 32 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 33 H 0.07 1.06 6.90 -51.93 -0.36 0.70 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.86 7.92 -51.92 -0.41 0.45 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -28.21 312.87 -5.91 -34.12 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.07 Total: 1.77 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.51 Total: -9.60 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.98 Total: -46.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.21 -5.91 -34.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304178752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.450 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds