Wall clock time and date at job start Mon Mar 30 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30828 * 125.96254 * 144.71545 * 4 2 1 6 6 C 1.33240 * 109.82631 * 179.86516 * 5 4 2 7 7 C 1.50698 * 125.52616 * 180.12572 * 6 5 4 8 8 H 1.09002 * 109.47355 * 345.29299 * 7 6 5 9 9 C 1.53002 * 109.47181 * 105.29442 * 7 6 5 10 10 N 1.46906 * 109.47516 * 225.29612 * 7 6 5 11 11 C 1.46896 * 111.00174 * 154.99986 * 10 7 6 12 12 C 1.52997 * 109.46946 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47258 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00133 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99662 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00158 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99876 * 17 15 13 19 19 H 1.48501 * 109.46984 * 209.99967 * 17 15 13 20 20 H 1.48499 * 109.47214 * 329.99811 * 17 15 13 21 21 N 1.30711 * 108.94979 * 0.39979 * 6 5 4 22 22 N 1.34425 * 125.95865 * 325.02050 * 4 2 1 23 23 H 0.96997 * 126.82445 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.09003 * 109.47143 * 179.97438 * 9 7 6 32 32 H 1.09001 * 109.46832 * 299.99867 * 9 7 6 33 33 H 1.08996 * 109.47230 * 60.00391 * 9 7 6 34 34 H 1.00902 * 110.99582 * 31.04041 * 10 7 6 35 35 H 1.09001 * 109.47229 * 300.00073 * 11 10 7 36 36 H 1.08996 * 109.47437 * 59.99746 * 11 10 7 37 37 H 1.09001 * 109.47180 * 300.00059 * 12 11 10 38 38 H 1.08996 * 109.47295 * 60.00173 * 12 11 10 39 39 H 0.97002 * 119.99346 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 3.1034 -1.4583 1.3023 6 6 3.2467 -1.9245 2.5423 7 6 4.3621 -2.8193 3.0179 8 1 4.8833 -3.2390 2.1575 9 6 5.3446 -2.0048 3.8619 10 7 3.8038 -3.9080 3.8310 11 6 4.6883 -5.0807 3.8193 12 6 4.0744 -6.1911 4.6743 13 6 4.9815 -7.3945 4.6618 14 1 5.9039 -7.3696 4.1006 15 6 4.6343 -8.5268 5.3678 16 7 5.4263 -9.5768 5.3572 17 14 3.0394 -8.5695 6.3391 18 1 1.9452 -9.0760 5.4722 19 1 3.1977 -9.4671 7.5115 20 1 2.7071 -7.1995 6.8059 21 7 2.2597 -1.4848 3.2778 22 7 1.4549 -0.6911 2.4442 23 1 0.6433 -0.2226 2.6945 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 6.1512 -2.6521 4.2063 32 1 5.7590 -1.1970 3.2586 33 1 4.8235 -1.5852 4.7223 34 1 2.8755 -4.1520 3.5199 35 1 4.8082 -5.4352 2.7955 36 1 5.6619 -4.8056 4.2248 37 1 3.9541 -5.8369 5.6981 38 1 3.1010 -6.4662 4.2683 39 1 5.1818 -10.3735 5.8536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309361456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:45 Heat of formation + Delta-G solvation = 64.457629 kcal Electronic energy + Delta-G solvation = -18140.597389 eV Core-core repulsion = 15312.237834 eV Total energy + Delta-G solvation = -2828.359555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.31499 -37.05981 -35.83093 -33.38047 -32.44863 -31.34538 -29.85227 -28.35929 -27.71597 -24.71089 -24.06813 -22.69515 -20.61020 -20.29610 -19.59076 -17.93141 -16.70354 -15.91045 -15.71029 -15.53702 -14.64729 -14.34907 -14.22563 -13.68965 -13.47747 -12.91887 -12.78617 -12.67134 -12.47855 -12.15945 -11.96997 -11.77729 -11.67443 -11.40263 -11.35906 -11.28028 -10.86843 -10.19763 -10.11872 -9.97911 -9.82871 -9.75255 -9.49227 -9.17602 -8.49036 -7.93408 -6.00009 -3.97990 1.50592 2.50284 2.78620 3.36210 3.43385 3.50771 3.62989 4.26112 4.40285 4.50998 4.51396 4.56900 4.87047 5.01712 5.06466 5.23506 5.29135 5.34788 5.43700 5.50335 5.54850 5.66257 5.71901 5.91711 6.05563 6.18184 6.23850 6.29622 6.34098 6.49720 6.83199 6.89845 7.17334 7.42464 7.62448 7.76268 7.92189 8.07601 8.57820 9.04405 9.62673 11.13331 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036105 B = 0.003798 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.332096 B = 7370.999527 C = 7703.905600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.144 4.144 4 C 0.284 3.716 5 N -0.535 5.535 6 C 0.230 3.770 7 C 0.176 3.824 8 H 0.069 0.931 9 C -0.132 4.132 10 N -0.680 5.680 11 C 0.073 3.927 12 C -0.009 4.009 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.263 1.263 21 N -0.287 5.287 22 N -0.485 5.485 23 H 0.437 0.563 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.338 0.662 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.008 0.992 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 23.321 -10.850 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.038 4.038 3 C -0.203 4.203 4 C 0.005 3.995 5 N -0.264 5.264 6 C -0.054 4.054 7 C 0.064 3.936 8 H 0.087 0.913 9 C -0.191 4.191 10 N -0.313 5.313 11 C -0.055 4.055 12 C -0.047 4.047 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.187 1.187 21 N -0.115 5.115 22 N -0.203 5.203 23 H 0.282 0.718 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.026 0.974 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.386 23.090 -9.684 26.740 hybrid contribution -1.632 -0.165 -0.319 1.671 sum -11.018 22.925 -10.003 27.332 Atomic orbital electron populations 1.21932 0.93353 1.02965 1.02950 1.19798 0.95912 0.95826 0.92309 1.21843 1.02307 0.93576 1.02558 1.24275 0.90501 0.95707 0.89056 1.70361 1.18643 1.15988 1.21394 1.24420 0.95831 0.97998 0.87108 1.19828 0.89137 0.89651 0.94981 0.91285 1.21756 0.98486 0.99182 0.99713 1.60727 1.06121 1.09138 1.55287 1.22061 0.96120 0.88613 0.98709 1.19539 0.96039 0.93299 0.95824 1.21075 1.07303 0.96582 1.30847 0.91011 1.24999 0.96857 0.95426 0.96142 1.69922 1.37488 1.04167 1.42793 0.86758 0.84086 0.78463 0.79915 1.20463 1.21453 1.18694 1.78187 1.05981 1.11491 1.15840 1.48079 1.24124 1.40217 1.07841 0.71810 0.90571 0.92542 0.91729 0.87280 0.91534 0.90960 0.92530 0.91110 0.92861 0.91698 0.84415 0.95725 0.91265 0.95515 0.97371 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.95 37.16 0.33 -0.39 16 2 C -0.02 -0.12 3.39 -91.77 -0.31 -0.43 16 3 C -0.14 -0.80 9.17 37.15 0.34 -0.45 16 4 C 0.28 3.16 6.95 -155.70 -1.08 2.08 16 5 N -0.54 -7.85 11.19 -8.16 -0.09 -7.94 16 6 C 0.23 3.63 6.64 -156.86 -1.04 2.59 16 7 C 0.18 2.86 3.16 -68.86 -0.22 2.64 16 8 H 0.07 1.13 7.80 -51.93 -0.40 0.72 16 9 C -0.13 -1.93 9.40 37.16 0.35 -1.58 16 10 N -0.68 -12.57 6.29 -107.95 -0.68 -13.25 16 11 C 0.07 1.53 5.42 -3.83 -0.02 1.51 16 12 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 14 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 17 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 21 N -0.29 -4.39 12.78 32.42 0.41 -3.97 16 22 N -0.48 -5.37 7.20 32.62 0.24 -5.13 16 23 H 0.44 3.27 8.21 -182.34 -1.50 1.77 16 24 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.21 7.46 -51.93 -0.39 -0.18 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 1.03 7.45 -51.93 -0.39 0.64 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 6.30 8.35 -39.29 -0.33 5.97 16 35 H 0.02 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.07 1.44 7.43 -51.93 -0.39 1.05 16 37 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -33.99 323.11 -8.89 -42.88 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.54 Total: 0.48 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.20 Total: -8.02 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.65 Total: -57.97 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.99 -8.89 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.341 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds