Wall clock time and date at job start Mon Mar 30 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30828 * 125.96254 * 144.71545 * 4 2 1 6 6 C 1.33240 * 109.82631 * 179.86516 * 5 4 2 7 7 C 1.50698 * 125.52616 * 180.12572 * 6 5 4 8 8 H 1.09002 * 109.47355 * 345.29299 * 7 6 5 9 9 C 1.53002 * 109.47181 * 105.29442 * 7 6 5 10 10 N 1.46906 * 109.47516 * 225.29612 * 7 6 5 11 11 C 1.46896 * 111.00174 * 154.99986 * 10 7 6 12 12 C 1.52997 * 109.46946 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47258 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00133 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99662 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00158 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99876 * 17 15 13 19 19 H 1.48501 * 109.46984 * 209.99967 * 17 15 13 20 20 H 1.48499 * 109.47214 * 329.99811 * 17 15 13 21 21 N 1.30711 * 108.94979 * 0.39979 * 6 5 4 22 22 N 1.34425 * 125.95865 * 325.02050 * 4 2 1 23 23 H 0.96997 * 126.82445 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.09003 * 109.47143 * 179.97438 * 9 7 6 32 32 H 1.09001 * 109.46832 * 299.99867 * 9 7 6 33 33 H 1.08996 * 109.47230 * 60.00391 * 9 7 6 34 34 H 1.00902 * 110.99582 * 31.04041 * 10 7 6 35 35 H 1.09001 * 109.47229 * 300.00073 * 11 10 7 36 36 H 1.08996 * 109.47437 * 59.99746 * 11 10 7 37 37 H 1.09001 * 109.47180 * 300.00059 * 12 11 10 38 38 H 1.08996 * 109.47295 * 60.00173 * 12 11 10 39 39 H 0.97002 * 119.99346 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 3.1034 -1.4583 1.3023 6 6 3.2467 -1.9245 2.5423 7 6 4.3621 -2.8193 3.0179 8 1 4.8833 -3.2390 2.1575 9 6 5.3446 -2.0048 3.8619 10 7 3.8038 -3.9080 3.8310 11 6 4.6883 -5.0807 3.8193 12 6 4.0744 -6.1911 4.6743 13 6 4.9815 -7.3945 4.6618 14 1 5.9039 -7.3696 4.1006 15 6 4.6343 -8.5268 5.3678 16 7 5.4263 -9.5768 5.3572 17 14 3.0394 -8.5695 6.3391 18 1 1.9452 -9.0760 5.4722 19 1 3.1977 -9.4671 7.5115 20 1 2.7071 -7.1995 6.8059 21 7 2.2597 -1.4848 3.2778 22 7 1.4549 -0.6911 2.4442 23 1 0.6433 -0.2226 2.6945 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 6.1512 -2.6521 4.2063 32 1 5.7590 -1.1970 3.2586 33 1 4.8235 -1.5852 4.7223 34 1 2.8755 -4.1520 3.5199 35 1 4.8082 -5.4352 2.7955 36 1 5.6619 -4.8056 4.2248 37 1 3.9541 -5.8369 5.6981 38 1 3.1010 -6.4662 4.2683 39 1 5.1818 -10.3735 5.8536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309361456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:45 Heat of formation + Delta-G solvation = 40.096311 kcal Electronic energy + Delta-G solvation = -18141.653775 eV Core-core repulsion = 15312.237834 eV Total energy + Delta-G solvation = -2829.415941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.31416 -38.38859 -36.60541 -35.27050 -33.78289 -32.88686 -31.02845 -29.96442 -28.10356 -26.36496 -25.06811 -23.96635 -22.22750 -21.37860 -20.75667 -18.97206 -18.79085 -17.12885 -16.79706 -16.42325 -16.25699 -15.67398 -15.42250 -15.00548 -14.71373 -14.48669 -14.02093 -13.77728 -13.38747 -13.14349 -13.10817 -13.00240 -12.89423 -12.56303 -12.44730 -12.21620 -11.93112 -11.86231 -11.76784 -11.73458 -11.42210 -11.15096 -11.13510 -10.76918 -10.56571 -9.44806 -8.29864 -6.34055 0.53423 1.35818 1.38377 1.51944 1.64204 1.72264 2.36763 2.69889 3.05600 3.19181 3.49763 3.72285 4.01274 4.09042 4.23823 4.32424 4.40332 4.44418 4.56109 4.70704 4.75224 4.83916 4.87123 4.90225 4.95154 5.07166 5.15480 5.18116 5.26560 5.30508 5.32046 5.33448 5.46700 5.62701 6.01677 6.15204 6.22386 6.36344 6.73631 7.04294 7.30681 8.86748 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036105 B = 0.003798 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.332096 B = 7370.999527 C = 7703.905600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 C -0.140 4.140 4 C 0.294 3.706 5 N -0.567 5.567 6 C 0.217 3.783 7 C 0.176 3.824 8 H 0.066 0.934 9 C -0.125 4.125 10 N -0.678 5.678 11 C 0.087 3.913 12 C -0.003 4.003 13 C -0.532 4.532 14 H 0.036 0.964 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.250 1.250 21 N -0.314 5.314 22 N -0.472 5.472 23 H 0.453 0.547 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.337 0.663 35 H 0.020 0.980 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.014 0.986 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 25.385 -11.200 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 C -0.199 4.199 4 C 0.016 3.984 5 N -0.297 5.297 6 C -0.066 4.066 7 C 0.064 3.936 8 H 0.084 0.916 9 C -0.184 4.184 10 N -0.310 5.310 11 C -0.042 4.042 12 C -0.040 4.040 13 C -0.571 4.571 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.174 1.174 21 N -0.144 5.144 22 N -0.191 5.191 23 H 0.301 0.699 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.693 25.192 -10.043 29.533 hybrid contribution -0.891 -0.741 -0.308 1.200 sum -12.584 24.450 -10.351 29.382 Atomic orbital electron populations 1.21945 0.91340 1.02859 1.04706 1.20045 0.97442 0.96084 0.90091 1.21837 1.01273 0.92680 1.04065 1.25055 0.89168 0.94214 0.89994 1.70335 1.20592 1.17565 1.21171 1.24215 0.95993 0.98584 0.87789 1.19806 0.89771 0.89222 0.94773 0.91647 1.21694 0.97914 0.99326 0.99455 1.60649 1.05647 1.08450 1.56215 1.21747 0.96199 0.88613 0.97605 1.19412 0.95445 0.92774 0.96418 1.21388 1.06861 0.98543 1.30259 0.94588 1.25961 1.00824 0.94886 0.97349 1.70062 1.39797 1.05068 1.44098 0.85633 0.79285 0.79138 0.78434 1.19249 1.20753 1.17365 1.78066 1.06528 1.12567 1.17191 1.47956 1.24227 1.39493 1.07421 0.69865 0.88412 0.91279 0.92748 0.87314 0.93159 0.88497 0.92003 0.91317 0.91255 0.92309 0.84492 0.96186 0.91379 0.95769 0.96798 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.95 71.98 0.64 -0.31 16 2 C -0.02 -0.17 3.39 -11.54 -0.04 -0.21 16 3 C -0.14 -1.18 9.17 71.98 0.66 -0.52 16 4 C 0.29 6.09 6.95 138.23 0.96 7.05 16 5 N -0.57 -16.20 11.19 -179.73 -2.01 -18.21 16 6 C 0.22 6.74 6.64 138.63 0.92 7.66 16 7 C 0.18 5.66 3.16 44.17 0.14 5.80 16 8 H 0.07 2.14 7.80 -2.39 -0.02 2.12 16 9 C -0.13 -3.58 9.40 71.98 0.68 -2.90 16 10 N -0.68 -24.72 6.29 -495.45 -3.12 -27.84 16 11 C 0.09 3.65 5.42 86.30 0.47 4.12 16 12 C 0.00 -0.13 4.30 29.85 0.13 0.00 16 13 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 14 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 15 C 0.01 0.41 5.47 84.65 0.46 0.87 16 16 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 17 Si 0.95 45.94 27.47 68.60 1.88 47.83 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 21 N -0.31 -9.28 12.78 -51.34 -0.66 -9.94 16 22 N -0.47 -9.63 7.20 -50.71 -0.37 -10.00 16 23 H 0.45 5.74 8.21 -213.10 -1.75 3.99 16 24 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.07 0.27 7.46 -2.39 -0.02 0.25 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 1.96 7.45 -2.39 -0.02 1.94 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.34 12.37 8.35 -89.69 -0.75 11.62 16 35 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 36 H 0.07 2.85 7.43 -2.39 -0.02 2.84 16 37 H 0.02 1.20 7.20 -2.39 -0.02 1.19 16 38 H 0.01 0.66 7.57 -2.39 -0.02 0.65 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -73.70 323.11 -0.20 -73.90 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -1.51 Total: 14.60 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.27 Total: -9.88 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.85 Total: -126.45 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.83 kcal Total: -73.70 -0.20 -73.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.997 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds