Wall clock time and date at job start Mon Mar 30 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47179 * 2 1 4 4 N 1.46500 * 109.46995 * 120.00710 * 2 1 3 5 5 C 1.35494 * 126.97652 * 300.14960 * 4 2 1 6 6 N 1.30519 * 107.30949 * 180.23023 * 5 4 2 7 7 N 1.28597 * 109.66868 * 359.77240 * 6 5 4 8 8 C 1.30525 * 109.67606 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.34723 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47197 * 90.01980 * 9 8 7 11 11 N 1.46911 * 109.46779 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99614 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 324.99463 * 12 11 10 14 14 C 1.52997 * 109.47094 * 85.00357 * 12 11 10 15 15 C 1.50706 * 109.46577 * 205.00147 * 12 11 10 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.08995 * 109.47135 * 300.00011 * 1 2 3 24 24 H 1.09001 * 109.47010 * 60.00271 * 1 2 3 25 25 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47072 * 240.00242 * 2 1 3 27 27 H 1.08998 * 109.47455 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47647 * 299.99978 * 3 2 1 29 29 H 1.09008 * 109.46920 * 60.00150 * 3 2 1 30 30 H 1.08001 * 126.34850 * 0.02562 * 5 4 2 31 31 H 1.09000 * 109.47014 * 330.01062 * 9 8 7 32 32 H 1.09000 * 109.46469 * 210.02033 * 9 8 7 33 33 H 1.09000 * 109.47362 * 60.00174 * 10 9 8 34 34 H 1.09000 * 109.47454 * 299.99449 * 10 9 8 35 35 H 1.00897 * 110.99488 * 56.04576 * 11 10 9 36 36 H 1.09002 * 109.47153 * 299.99508 * 14 12 11 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47261 * 59.99681 * 14 12 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.7774 -0.3551 2.4865 6 7 2.3991 -1.2239 3.2363 7 7 3.0067 -2.0802 2.4938 8 6 2.8006 -1.7962 1.2366 9 6 3.3376 -2.5544 0.0500 10 6 2.3446 -3.6480 -0.3483 11 7 2.8679 -4.3866 -1.5054 12 6 1.9388 -5.4477 -1.9166 13 1 1.4539 -5.8676 -1.0353 14 6 0.8788 -4.8630 -2.8522 15 6 2.7005 -6.5315 -2.6352 16 1 3.7678 -6.4409 -2.7730 17 6 2.0344 -7.6382 -3.1175 18 7 2.6990 -8.5838 -3.7450 19 14 0.1881 -7.7938 -2.8810 20 1 -0.5127 -7.1770 -4.0358 21 1 -0.1797 -9.2295 -2.7880 22 1 -0.2112 -7.0986 -1.6309 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.1839 0.4789 2.8309 31 1 4.2932 -3.0089 0.3115 32 1 3.4780 -1.8690 -0.7857 33 1 1.3891 -3.1934 -0.6099 34 1 2.2043 -4.3334 0.4875 35 1 3.7831 -4.7636 -1.3099 36 1 0.3280 -4.0791 -2.3325 37 1 0.1898 -5.6504 -3.1576 38 1 1.3639 -4.4431 -3.7335 39 1 2.2304 -9.3622 -4.0847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309377768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:25 Heat of formation + Delta-G solvation = 73.356087 kcal Electronic energy + Delta-G solvation = -18739.344729 eV Core-core repulsion = 15911.371040 eV Total energy + Delta-G solvation = -2827.973689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.17199 -36.95235 -36.55372 -33.65608 -31.99650 -31.48481 -29.86716 -27.79559 -27.44465 -25.16059 -23.92460 -22.70146 -21.46286 -20.25613 -19.88853 -17.23996 -16.82885 -16.09515 -15.79522 -15.34111 -14.87116 -14.52999 -14.18568 -13.73624 -13.32424 -13.23526 -13.07251 -12.85111 -12.79536 -12.28484 -12.08157 -11.96757 -11.59383 -11.40388 -11.31304 -11.03095 -10.82280 -10.64504 -10.30227 -10.25987 -10.13705 -9.54965 -9.17739 -9.03280 -8.64190 -7.62307 -6.12973 -4.13127 1.78328 2.34974 2.91078 3.23567 3.34049 3.36299 4.09257 4.24098 4.35547 4.41151 4.43310 4.59598 4.92916 5.01985 5.06978 5.14414 5.20472 5.21919 5.29668 5.41267 5.50362 5.59075 5.62832 5.68890 5.86783 6.12703 6.15884 6.25617 6.32289 6.47159 6.64452 6.74278 6.82967 7.32148 7.51819 7.83965 8.25627 8.55521 8.76110 8.91361 9.48948 10.99974 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030244 B = 0.004746 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.567687 B = 5898.080972 C = 6189.624265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 C -0.162 4.162 4 N -0.467 5.467 5 C 0.142 3.858 6 N -0.300 5.300 7 N -0.297 5.297 8 C 0.191 3.809 9 C -0.034 4.034 10 C 0.065 3.935 11 N -0.678 5.678 12 C 0.182 3.818 13 H 0.002 0.998 14 C -0.137 4.137 15 C -0.521 4.521 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.269 1.269 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.211 0.789 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.343 0.657 36 H 0.023 0.977 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 20.588 6.173 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 C -0.220 4.220 4 N -0.158 5.158 5 C -0.145 4.145 6 N -0.139 5.139 7 N -0.137 5.137 8 C -0.077 4.077 9 C -0.074 4.074 10 C -0.067 4.067 11 N -0.309 5.309 12 C 0.073 3.927 13 H 0.019 0.981 14 C -0.194 4.194 15 C -0.559 4.559 16 H 0.098 0.902 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.194 1.194 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.161 0.839 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.318 20.168 6.856 21.735 hybrid contribution -1.534 -0.041 -0.386 1.582 sum -5.852 20.127 6.470 21.937 Atomic orbital electron populations 1.22180 0.92716 1.03730 1.03472 1.21612 0.95920 0.94081 0.86342 1.22177 1.02314 0.93933 1.03545 1.46510 1.38356 1.22805 1.08178 1.26181 1.04589 1.03347 0.80429 1.74235 1.10253 1.02621 1.26838 1.74291 1.20147 1.20302 0.98934 1.25001 0.96238 0.89048 0.97390 1.20109 1.00085 0.96715 0.90502 1.21852 0.96728 0.94786 0.93289 1.60555 1.06602 1.30398 1.33394 1.19527 0.90891 0.88471 0.93779 0.98077 1.22070 0.98273 0.98366 1.00721 1.21085 0.96354 1.01824 1.36641 0.90213 1.24922 0.98183 0.95456 0.94452 1.69888 1.36128 1.09642 1.37817 0.86815 0.86217 0.75948 0.78948 1.20506 1.22435 1.19449 0.91696 0.89970 0.91359 0.86974 0.91573 0.89992 0.91675 0.77222 0.88276 0.89344 0.92071 0.95051 0.83915 0.95817 0.94438 0.92272 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.25 37.16 0.34 -0.73 16 2 C 0.12 0.94 3.56 -67.93 -0.24 0.70 16 3 C -0.16 -0.90 9.26 37.15 0.34 -0.55 16 4 N -0.47 -5.14 2.60 -108.21 -0.28 -5.42 16 5 C 0.14 1.61 11.81 -89.95 -1.06 0.55 16 6 N -0.30 -4.73 12.21 29.69 0.36 -4.36 16 7 N -0.30 -5.04 12.21 32.80 0.40 -4.64 16 8 C 0.19 2.69 7.28 -154.99 -1.13 1.56 16 9 C -0.03 -0.45 5.67 -27.89 -0.16 -0.61 16 10 C 0.06 1.05 5.47 -3.82 -0.02 1.03 16 11 N -0.68 -13.09 6.30 -107.95 -0.68 -13.77 16 12 C 0.18 4.24 2.19 -68.86 -0.15 4.09 16 13 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 14 C -0.14 -2.96 8.89 37.16 0.33 -2.62 16 15 C -0.52 -14.35 9.17 -34.44 -0.32 -14.67 16 16 H 0.08 2.36 7.86 -52.49 -0.41 1.94 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 19 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 20 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 21 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 23 H 0.06 0.37 7.97 -51.93 -0.41 -0.05 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.11 0.89 6.83 -51.92 -0.35 0.54 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 7.98 -51.92 -0.41 -0.10 16 30 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.01 7.20 -51.93 -0.37 0.64 16 33 H 0.06 0.97 7.44 -51.93 -0.39 0.59 16 34 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.34 6.61 8.22 -39.29 -0.32 6.29 16 36 H 0.02 0.44 7.45 -51.93 -0.39 0.05 16 37 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -33.02 314.53 -7.14 -40.16 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.15 Total: 1.15 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.16 Total: -9.29 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.57 Total: -54.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.02 -7.14 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309377768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.514 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds