Wall clock time and date at job start Mon Mar 30 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47179 * 2 1 4 4 N 1.46500 * 109.46995 * 120.00710 * 2 1 3 5 5 C 1.35494 * 126.97652 * 300.14960 * 4 2 1 6 6 N 1.30519 * 107.30949 * 180.23023 * 5 4 2 7 7 N 1.28597 * 109.66868 * 359.77240 * 6 5 4 8 8 C 1.30525 * 109.67606 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.34723 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47197 * 90.01980 * 9 8 7 11 11 N 1.46911 * 109.46779 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99614 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47149 * 324.99463 * 12 11 10 14 14 C 1.52997 * 109.47094 * 85.00357 * 12 11 10 15 15 C 1.50706 * 109.46577 * 205.00147 * 12 11 10 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.08995 * 109.47135 * 300.00011 * 1 2 3 24 24 H 1.09001 * 109.47010 * 60.00271 * 1 2 3 25 25 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47072 * 240.00242 * 2 1 3 27 27 H 1.08998 * 109.47455 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47647 * 299.99978 * 3 2 1 29 29 H 1.09008 * 109.46920 * 60.00150 * 3 2 1 30 30 H 1.08001 * 126.34850 * 0.02562 * 5 4 2 31 31 H 1.09000 * 109.47014 * 330.01062 * 9 8 7 32 32 H 1.09000 * 109.46469 * 210.02033 * 9 8 7 33 33 H 1.09000 * 109.47362 * 60.00174 * 10 9 8 34 34 H 1.09000 * 109.47454 * 299.99449 * 10 9 8 35 35 H 1.00897 * 110.99488 * 56.04576 * 11 10 9 36 36 H 1.09002 * 109.47153 * 299.99508 * 14 12 11 37 37 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47261 * 59.99681 * 14 12 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.7774 -0.3551 2.4865 6 7 2.3991 -1.2239 3.2363 7 7 3.0067 -2.0802 2.4938 8 6 2.8006 -1.7962 1.2366 9 6 3.3376 -2.5544 0.0500 10 6 2.3446 -3.6480 -0.3483 11 7 2.8679 -4.3866 -1.5054 12 6 1.9388 -5.4477 -1.9166 13 1 1.4539 -5.8676 -1.0353 14 6 0.8788 -4.8630 -2.8522 15 6 2.7005 -6.5315 -2.6352 16 1 3.7678 -6.4409 -2.7730 17 6 2.0344 -7.6382 -3.1175 18 7 2.6990 -8.5838 -3.7450 19 14 0.1881 -7.7938 -2.8810 20 1 -0.5127 -7.1770 -4.0358 21 1 -0.1797 -9.2295 -2.7880 22 1 -0.2112 -7.0986 -1.6309 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.1839 0.4789 2.8309 31 1 4.2932 -3.0089 0.3115 32 1 3.4780 -1.8690 -0.7857 33 1 1.3891 -3.1934 -0.6099 34 1 2.2043 -4.3334 0.4875 35 1 3.7831 -4.7636 -1.3099 36 1 0.3280 -4.0791 -2.3325 37 1 0.1898 -5.6504 -3.1576 38 1 1.3639 -4.4431 -3.7335 39 1 2.2304 -9.3622 -4.0847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309377768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:24 Heat of formation + Delta-G solvation = 51.115209 kcal Electronic energy + Delta-G solvation = -18740.309166 eV Core-core repulsion = 15911.371040 eV Total energy + Delta-G solvation = -2828.938126 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.14749 -38.26956 -37.57134 -35.26012 -33.70919 -32.35141 -31.32355 -28.78585 -28.22842 -27.15671 -24.76231 -24.04317 -22.39047 -21.79021 -21.06642 -18.87230 -18.01457 -17.40046 -17.05179 -16.50201 -15.96142 -15.81272 -15.35313 -15.05740 -14.63036 -14.51370 -14.28943 -14.06349 -13.74059 -13.50036 -13.18185 -12.98078 -12.67774 -12.52961 -12.50814 -12.44661 -12.25654 -12.07218 -11.96311 -11.46263 -11.32205 -11.11092 -11.07164 -10.78668 -10.21754 -9.26117 -8.32441 -6.36969 0.84874 1.28596 1.34573 1.44105 1.54430 1.86567 2.29418 3.02383 3.11368 3.52129 3.66305 3.76335 3.89380 3.93886 4.08097 4.16354 4.38627 4.45171 4.51701 4.57812 4.65682 4.69420 4.77982 4.80857 4.84581 4.87822 4.93991 5.04084 5.06087 5.17521 5.22715 5.28432 5.48194 5.61106 5.93988 6.00092 6.44708 6.59201 6.78301 7.29569 7.74358 8.83947 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030244 B = 0.004746 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.567687 B = 5898.080972 C = 6189.624265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 C -0.156 4.156 4 N -0.460 5.460 5 C 0.163 3.837 6 N -0.349 5.349 7 N -0.343 5.343 8 C 0.183 3.817 9 C -0.022 4.022 10 C 0.073 3.927 11 N -0.672 5.672 12 C 0.184 3.816 13 H -0.011 1.011 14 C -0.132 4.132 15 C -0.525 4.525 16 H 0.044 0.956 17 C 0.016 3.984 18 N -0.944 5.944 19 Si 0.951 3.049 20 H -0.261 1.261 21 H -0.299 1.299 22 H -0.257 1.257 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.255 0.745 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.010 0.990 35 H 0.340 0.660 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 23.419 6.117 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 C -0.214 4.214 4 N -0.150 5.150 5 C -0.125 4.125 6 N -0.188 5.188 7 N -0.183 5.183 8 C -0.087 4.087 9 C -0.062 4.062 10 C -0.058 4.058 11 N -0.303 5.303 12 C 0.075 3.925 13 H 0.007 0.993 14 C -0.190 4.190 15 C -0.563 4.563 16 H 0.063 0.937 17 C -0.182 4.182 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.187 1.187 21 H -0.227 1.227 22 H -0.181 1.181 23 H 0.096 0.904 24 H 0.121 0.879 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.271 0.729 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.028 0.972 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.479 23.037 6.797 24.877 hybrid contribution -0.795 -0.836 -0.355 1.207 sum -7.274 22.201 6.442 24.234 Atomic orbital electron populations 1.22190 0.91560 1.02827 1.05199 1.21950 0.96768 0.94979 0.84763 1.22169 1.01599 0.92476 1.05154 1.46739 1.37246 1.21851 1.09197 1.26955 1.02666 1.02781 0.80091 1.74135 1.12300 1.04133 1.28191 1.74183 1.21802 1.21870 1.00402 1.24923 0.97005 0.90158 0.96623 1.19947 0.98864 0.96177 0.91175 1.21807 0.97957 0.94771 0.91216 1.60528 1.05873 1.28917 1.34973 1.19389 0.91455 0.88470 0.93210 0.99311 1.21961 0.97631 0.98943 1.00447 1.21393 0.95275 1.03325 1.36324 0.93741 1.25762 1.03070 0.95115 0.94265 1.70031 1.38232 1.10566 1.39611 0.85828 0.80553 0.75924 0.79908 1.18671 1.22669 1.18103 0.90412 0.87899 0.93482 0.87213 0.92664 0.87931 0.90553 0.72907 0.88678 0.87025 0.91044 0.97209 0.84243 0.92469 0.95232 0.92353 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.25 71.98 0.67 -0.85 16 2 C 0.12 1.40 3.56 44.99 0.16 1.56 16 3 C -0.16 -1.14 9.26 71.98 0.67 -0.47 16 4 N -0.46 -9.04 2.60 -496.28 -1.29 -10.33 16 5 C 0.16 3.32 11.81 180.11 2.13 5.44 16 6 N -0.35 -10.74 12.21 -59.99 -0.73 -11.47 16 7 N -0.34 -11.65 12.21 -50.15 -0.61 -12.26 16 8 C 0.18 4.95 7.28 137.98 1.01 5.95 16 9 C -0.02 -0.55 5.67 29.85 0.17 -0.38 16 10 C 0.07 2.30 5.47 86.30 0.47 2.78 16 11 N -0.67 -25.50 6.30 -495.43 -3.12 -28.62 16 12 C 0.18 8.43 2.19 44.17 0.10 8.53 16 13 H -0.01 -0.51 6.86 -2.39 -0.02 -0.53 16 14 C -0.13 -5.38 8.89 71.98 0.64 -4.74 16 15 C -0.52 -29.41 9.17 25.60 0.23 -29.17 16 16 H 0.04 2.73 7.86 -2.91 -0.02 2.71 16 17 C 0.02 0.92 5.45 84.66 0.46 1.38 16 18 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 19 Si 0.95 44.79 24.37 68.60 1.67 46.46 16 20 H -0.26 -11.52 6.87 99.48 0.68 -10.84 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.26 -11.47 6.53 99.48 0.65 -10.82 16 23 H 0.08 0.54 7.97 -2.39 -0.02 0.52 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 1.39 6.83 -2.38 -0.02 1.37 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.41 7.98 -2.38 -0.02 0.39 16 30 H 0.26 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.30 7.20 -2.39 -0.02 2.29 16 33 H 0.07 2.10 7.44 -2.39 -0.02 2.09 16 34 H 0.01 0.35 8.05 -2.39 -0.02 0.33 16 35 H 0.34 13.26 8.22 -89.70 -0.74 12.53 16 36 H 0.06 1.93 7.45 -2.39 -0.02 1.91 16 37 H 0.03 1.24 3.27 -2.39 -0.01 1.24 16 38 H 0.06 2.36 8.14 -2.38 -0.02 2.35 16 39 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -73.65 314.53 3.13 -70.52 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.22 Total: 13.85 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 6.70 Total: -9.98 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.46 Total: -120.86 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -73.65 3.13 -70.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309377768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.639 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds