Wall clock time and date at job start Mon Mar 30 2020 04:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 N 1.46502 * 109.47269 * 240.00241 * 2 1 3 5 5 C 1.35492 * 126.98001 * 59.68468 * 4 2 1 6 6 N 1.30518 * 107.30793 * 179.83608 * 5 4 2 7 7 N 1.28598 * 109.67078 * 0.44084 * 6 5 4 8 8 C 1.30519 * 109.67582 * 359.72152 * 7 6 5 9 9 C 1.50697 * 126.35075 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46976 * 269.95540 * 9 8 7 11 11 N 1.46899 * 109.47163 * 179.97438 * 10 9 8 12 12 C 1.46900 * 111.00042 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47313 * 34.99528 * 12 11 10 14 14 C 1.53003 * 109.46423 * 274.99748 * 12 11 10 15 15 C 1.50696 * 109.47159 * 154.99897 * 12 11 10 16 16 H 1.08008 * 120.00213 * 34.99651 * 15 12 11 17 17 C 1.37874 * 120.00075 * 214.99375 * 15 12 11 18 18 N 1.31512 * 120.00041 * 184.91620 * 17 15 12 19 19 Si 1.86804 * 120.00077 * 4.91442 * 17 15 12 20 20 H 1.48500 * 109.47046 * 84.83041 * 19 17 15 21 21 H 1.48500 * 109.47243 * 204.83569 * 19 17 15 22 22 H 1.48502 * 109.46790 * 324.83448 * 19 17 15 23 23 H 1.09004 * 109.46827 * 59.99630 * 1 2 3 24 24 H 1.08998 * 109.47188 * 299.99994 * 1 2 3 25 25 H 1.08994 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47288 * 120.00094 * 2 1 3 27 27 H 1.09002 * 109.46886 * 60.00425 * 3 2 1 28 28 H 1.09007 * 109.47034 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47624 * 299.99891 * 3 2 1 30 30 H 1.08007 * 126.34660 * 359.97438 * 5 4 2 31 31 H 1.08997 * 109.46720 * 29.95278 * 9 8 7 32 32 H 1.09001 * 109.46908 * 149.95631 * 9 8 7 33 33 H 1.09000 * 109.46942 * 299.99926 * 10 9 8 34 34 H 1.09004 * 109.46967 * 59.99851 * 10 9 8 35 35 H 1.00899 * 110.99746 * 56.04367 * 11 10 9 36 36 H 1.09010 * 109.46761 * 175.04922 * 14 12 11 37 37 H 1.09002 * 109.47297 * 295.03999 * 14 12 11 38 38 H 1.08996 * 109.47365 * 55.04870 * 14 12 11 39 39 H 0.97003 * 120.00352 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7750 -0.3566 -2.4866 6 7 2.3967 -1.2253 -3.2364 7 7 3.0029 -2.0827 -2.4940 8 6 2.8003 -1.7964 -1.2368 9 6 3.3371 -2.5547 -0.0503 10 6 2.3408 -3.6440 0.3520 11 7 2.8643 -4.3836 1.5082 12 6 1.9321 -5.4405 1.9230 13 1 1.4429 -5.8592 1.0436 14 6 0.8772 -4.8505 2.8611 15 6 2.6913 -6.5267 2.6405 16 1 3.5365 -6.2736 3.2636 17 6 2.3071 -7.8435 2.5016 18 7 2.9071 -8.7809 3.2021 19 14 0.9341 -8.2960 1.3185 20 1 1.4920 -8.4594 -0.0480 21 1 0.3063 -9.5698 1.7526 22 1 -0.0875 -7.2182 1.3104 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.1790 0.4758 -2.8309 31 1 4.2903 -3.0133 -0.3132 32 1 3.4819 -1.8685 0.7842 33 1 1.3876 -3.1853 0.6149 34 1 2.1960 -4.3301 -0.4825 35 1 3.0681 -3.7596 2.2745 36 1 0.1354 -5.6131 3.0990 37 1 1.3565 -4.5112 3.7794 38 1 0.3881 -4.0074 2.3735 39 1 2.6365 -9.7074 3.1046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309377775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:28 Heat of formation + Delta-G solvation = 68.273216 kcal Electronic energy + Delta-G solvation = -18745.832876 eV Core-core repulsion = 15917.638777 eV Total energy + Delta-G solvation = -2828.194099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.17275 -36.99591 -36.59542 -33.56292 -31.99897 -31.50733 -29.78574 -27.83888 -27.20455 -25.24703 -23.94007 -22.71040 -21.45728 -20.35638 -19.94378 -17.27007 -16.99822 -16.11330 -15.67431 -15.03456 -14.78438 -14.62462 -14.22444 -13.76256 -13.37247 -13.23618 -13.08227 -12.83977 -12.42914 -12.16669 -12.03971 -11.99518 -11.75647 -11.54206 -11.31061 -11.06067 -10.87650 -10.71310 -10.32449 -10.26910 -10.13264 -9.76339 -9.24269 -9.08359 -8.52058 -7.46966 -6.05720 -4.03313 1.77988 2.33221 2.92200 3.29885 3.36789 3.38938 4.04449 4.23370 4.36707 4.41899 4.42500 4.53155 4.92338 4.97786 5.01520 5.10288 5.17243 5.24181 5.31724 5.44952 5.48243 5.50707 5.61408 5.69659 5.87102 6.12204 6.14534 6.23008 6.24616 6.35863 6.54201 6.75965 6.82470 7.07286 7.66696 7.89964 8.29536 8.64313 8.77176 9.01731 9.57042 11.07813 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.004913 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.470374 B = 5697.586854 C = 5995.964460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.162 4.162 4 N -0.469 5.469 5 C 0.141 3.859 6 N -0.300 5.300 7 N -0.293 5.293 8 C 0.191 3.809 9 C -0.034 4.034 10 C 0.064 3.936 11 N -0.671 5.671 12 C 0.180 3.820 13 H 0.037 0.963 14 C -0.170 4.170 15 C -0.493 4.493 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.270 1.270 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.211 0.789 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.327 0.673 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.017 0.983 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 21.669 -4.682 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 C -0.220 4.220 4 N -0.161 5.161 5 C -0.146 4.146 6 N -0.139 5.139 7 N -0.133 5.133 8 C -0.077 4.077 9 C -0.074 4.074 10 C -0.067 4.067 11 N -0.301 5.301 12 C 0.072 3.928 13 H 0.055 0.945 14 C -0.229 4.229 15 C -0.531 4.531 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.195 1.195 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.695 20.335 -6.276 21.793 hybrid contribution -2.098 0.959 0.901 2.477 sum -6.793 21.294 -5.375 22.989 Atomic orbital electron populations 1.22185 0.92724 1.03704 1.03523 1.21567 0.95892 0.94074 0.86278 1.22181 1.02341 0.93898 1.03578 1.46524 1.38449 1.22974 1.08134 1.26180 1.04596 1.03410 0.80408 1.74249 1.10228 1.02558 1.26840 1.74312 1.20020 1.20087 0.98904 1.25039 0.96229 0.88874 0.97515 1.20133 1.01113 0.95840 0.90308 1.21905 0.93738 0.94533 0.96504 1.60903 1.46981 1.14227 1.07978 1.19660 0.89162 0.90268 0.93693 0.94521 1.22644 1.00521 0.98877 1.00895 1.20832 1.15247 0.89345 1.27688 0.90498 1.24962 0.96191 0.96389 0.95485 1.69884 1.42265 1.00877 1.40747 0.86932 0.82898 0.77717 0.82283 1.19965 1.21487 1.19501 0.91594 0.90014 0.91400 0.87397 0.90039 0.91541 0.91584 0.77237 0.87175 0.90449 0.96695 0.90837 0.85634 0.93156 0.93171 0.96373 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.25 37.16 0.34 -0.69 16 2 C 0.13 0.92 3.57 -67.93 -0.24 0.68 16 3 C -0.16 -0.86 9.26 37.16 0.34 -0.52 16 4 N -0.47 -5.15 2.60 -108.21 -0.28 -5.43 16 5 C 0.14 1.62 11.81 -89.95 -1.06 0.55 16 6 N -0.30 -4.77 12.21 29.69 0.36 -4.41 16 7 N -0.29 -5.09 12.21 32.80 0.40 -4.69 16 8 C 0.19 2.73 7.28 -154.99 -1.13 1.60 16 9 C -0.03 -0.46 5.67 -27.88 -0.16 -0.62 16 10 C 0.06 1.06 5.46 -3.82 -0.02 1.04 16 11 N -0.67 -13.05 6.23 -107.95 -0.67 -13.72 16 12 C 0.18 4.13 2.24 -68.87 -0.15 3.98 16 13 H 0.04 0.89 4.95 -51.93 -0.26 0.63 16 14 C -0.17 -3.42 9.16 37.16 0.34 -3.08 16 15 C -0.49 -13.65 9.19 -34.44 -0.32 -13.97 16 16 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 19 Si 0.87 21.71 26.99 -169.99 -4.59 17.13 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.39 6.82 56.52 0.39 -6.00 16 23 H 0.07 0.36 7.97 -51.93 -0.41 -0.05 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.11 0.79 6.83 -51.93 -0.35 0.44 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.31 7.98 -51.93 -0.41 -0.10 16 30 H 0.21 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.08 0.84 7.21 -51.93 -0.37 0.46 16 33 H 0.01 0.23 7.36 -51.93 -0.38 -0.15 16 34 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 35 H 0.33 5.66 8.48 -39.29 -0.33 5.33 16 36 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.31 7.36 -51.93 -0.38 -0.08 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -33.63 321.22 -7.60 -41.23 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.29 Total: 0.77 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.15 Total: -9.06 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.58 Total: -54.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.63 -7.60 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309377775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.505 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds