Wall clock time and date at job start Mon Mar 30 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 N 1.46502 * 109.47269 * 240.00241 * 2 1 3 5 5 C 1.35492 * 126.98001 * 59.68468 * 4 2 1 6 6 N 1.30518 * 107.30793 * 179.83608 * 5 4 2 7 7 N 1.28598 * 109.67078 * 0.44084 * 6 5 4 8 8 C 1.30519 * 109.67582 * 359.72152 * 7 6 5 9 9 C 1.50697 * 126.35075 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46976 * 269.95540 * 9 8 7 11 11 N 1.46899 * 109.47163 * 179.97438 * 10 9 8 12 12 C 1.46900 * 111.00042 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47313 * 34.99528 * 12 11 10 14 14 C 1.53003 * 109.46423 * 274.99748 * 12 11 10 15 15 C 1.50696 * 109.47159 * 154.99897 * 12 11 10 16 16 H 1.08008 * 120.00213 * 34.99651 * 15 12 11 17 17 C 1.37874 * 120.00075 * 214.99375 * 15 12 11 18 18 N 1.31512 * 120.00041 * 184.91620 * 17 15 12 19 19 Si 1.86804 * 120.00077 * 4.91442 * 17 15 12 20 20 H 1.48500 * 109.47046 * 84.83041 * 19 17 15 21 21 H 1.48500 * 109.47243 * 204.83569 * 19 17 15 22 22 H 1.48502 * 109.46790 * 324.83448 * 19 17 15 23 23 H 1.09004 * 109.46827 * 59.99630 * 1 2 3 24 24 H 1.08998 * 109.47188 * 299.99994 * 1 2 3 25 25 H 1.08994 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47288 * 120.00094 * 2 1 3 27 27 H 1.09002 * 109.46886 * 60.00425 * 3 2 1 28 28 H 1.09007 * 109.47034 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47624 * 299.99891 * 3 2 1 30 30 H 1.08007 * 126.34660 * 359.97438 * 5 4 2 31 31 H 1.08997 * 109.46720 * 29.95278 * 9 8 7 32 32 H 1.09001 * 109.46908 * 149.95631 * 9 8 7 33 33 H 1.09000 * 109.46942 * 299.99926 * 10 9 8 34 34 H 1.09004 * 109.46967 * 59.99851 * 10 9 8 35 35 H 1.00899 * 110.99746 * 56.04367 * 11 10 9 36 36 H 1.09010 * 109.46761 * 175.04922 * 14 12 11 37 37 H 1.09002 * 109.47297 * 295.03999 * 14 12 11 38 38 H 1.08996 * 109.47365 * 55.04870 * 14 12 11 39 39 H 0.97003 * 120.00352 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7750 -0.3566 -2.4866 6 7 2.3967 -1.2253 -3.2364 7 7 3.0029 -2.0827 -2.4940 8 6 2.8003 -1.7964 -1.2368 9 6 3.3371 -2.5547 -0.0503 10 6 2.3408 -3.6440 0.3520 11 7 2.8643 -4.3836 1.5082 12 6 1.9321 -5.4405 1.9230 13 1 1.4429 -5.8592 1.0436 14 6 0.8772 -4.8505 2.8611 15 6 2.6913 -6.5267 2.6405 16 1 3.5365 -6.2736 3.2636 17 6 2.3071 -7.8435 2.5016 18 7 2.9071 -8.7809 3.2021 19 14 0.9341 -8.2960 1.3185 20 1 1.4920 -8.4594 -0.0480 21 1 0.3063 -9.5698 1.7526 22 1 -0.0875 -7.2182 1.3104 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.1790 0.4758 -2.8309 31 1 4.2903 -3.0133 -0.3132 32 1 3.4819 -1.8685 0.7842 33 1 1.3876 -3.1853 0.6149 34 1 2.1960 -4.3301 -0.4825 35 1 3.0681 -3.7596 2.2745 36 1 0.1354 -5.6131 3.0990 37 1 1.3565 -4.5112 3.7794 38 1 0.3881 -4.0074 2.3735 39 1 2.6365 -9.7074 3.1046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309377775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:27 Heat of formation + Delta-G solvation = 45.867085 kcal Electronic energy + Delta-G solvation = -18746.804479 eV Core-core repulsion = 15917.638777 eV Total energy + Delta-G solvation = -2829.165701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.14915 -38.30147 -37.57990 -35.13811 -33.74601 -32.35321 -31.18918 -28.55097 -28.24535 -27.23168 -24.75243 -24.01118 -22.38402 -21.95432 -21.06113 -19.06193 -18.03084 -17.14843 -16.67404 -16.63229 -16.05970 -15.72249 -15.36972 -14.93055 -14.65467 -14.39067 -14.30026 -13.77555 -13.66615 -13.45651 -13.20245 -13.07575 -12.90998 -12.62522 -12.52391 -12.37888 -12.23451 -12.00692 -11.93702 -11.78191 -11.32012 -11.20077 -11.10049 -10.69896 -10.21907 -9.03341 -8.26102 -6.27024 0.84652 1.31743 1.35830 1.42423 1.53561 1.87189 2.34176 3.00148 3.21321 3.50766 3.68502 3.82430 3.88910 3.91599 4.06546 4.15187 4.37500 4.42235 4.48695 4.53184 4.64095 4.69249 4.76659 4.78638 4.79626 4.90206 4.97975 5.03920 5.12284 5.15929 5.21036 5.27927 5.44295 5.68810 6.00021 6.03519 6.63264 6.78632 6.81637 7.36923 7.75136 8.91283 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.004913 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.470374 B = 5697.586854 C = 5995.964460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 C -0.157 4.157 4 N -0.461 5.461 5 C 0.163 3.837 6 N -0.350 5.350 7 N -0.343 5.343 8 C 0.183 3.817 9 C -0.022 4.022 10 C 0.075 3.925 11 N -0.684 5.684 12 C 0.182 3.818 13 H 0.027 0.973 14 C -0.161 4.161 15 C -0.493 4.493 16 H 0.038 0.962 17 C 0.012 3.988 18 N -0.949 5.949 19 Si 0.935 3.065 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.247 1.247 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.255 0.745 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.341 0.659 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 24.698 -4.825 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 C -0.214 4.214 4 N -0.152 5.152 5 C -0.125 4.125 6 N -0.188 5.188 7 N -0.183 5.183 8 C -0.087 4.087 9 C -0.062 4.062 10 C -0.056 4.056 11 N -0.315 5.315 12 C 0.073 3.927 13 H 0.045 0.955 14 C -0.221 4.221 15 C -0.532 4.532 16 H 0.056 0.944 17 C -0.184 4.184 18 N -0.590 5.590 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.171 1.171 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.271 0.729 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.160 0.840 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.792 23.410 -6.406 25.203 hybrid contribution -1.400 0.155 0.985 1.719 sum -8.191 23.565 -5.421 25.530 Atomic orbital electron populations 1.22195 0.91586 1.02788 1.05240 1.21946 0.96729 0.94982 0.84747 1.22175 1.01622 0.92477 1.05173 1.46753 1.37275 1.21938 1.09192 1.26955 1.02633 1.02799 0.80127 1.74143 1.12317 1.04097 1.28241 1.74199 1.21792 1.21768 1.00509 1.24945 0.96998 0.90014 0.96696 1.19962 0.99407 0.95547 0.91292 1.21757 0.95313 0.94412 0.94121 1.60570 1.46786 1.14813 1.09341 1.19483 0.89652 0.90294 0.93305 0.95513 1.22458 0.99385 0.99642 1.00599 1.21159 1.14148 0.90993 1.26932 0.94376 1.25766 0.98948 0.96472 0.97262 1.70031 1.44657 1.01325 1.43028 0.85938 0.80465 0.78087 0.79494 1.20295 1.21119 1.17074 0.90476 0.87811 0.93531 0.87172 0.87856 0.92638 0.90623 0.72907 0.88637 0.87183 0.94848 0.93692 0.84008 0.94197 0.92666 0.92830 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.25 71.98 0.67 -0.72 16 2 C 0.12 1.29 3.57 44.99 0.16 1.45 16 3 C -0.16 -1.02 9.26 71.98 0.67 -0.35 16 4 N -0.46 -8.92 2.60 -496.28 -1.29 -10.21 16 5 C 0.16 3.32 11.81 180.11 2.13 5.44 16 6 N -0.35 -10.88 12.21 -59.99 -0.73 -11.61 16 7 N -0.34 -11.89 12.21 -50.16 -0.61 -12.51 16 8 C 0.18 4.99 7.28 137.98 1.01 6.00 16 9 C -0.02 -0.57 5.67 29.85 0.17 -0.40 16 10 C 0.07 2.34 5.46 86.30 0.47 2.82 16 11 N -0.68 -25.78 6.23 -495.44 -3.09 -28.87 16 12 C 0.18 8.13 2.24 44.17 0.10 8.23 16 13 H 0.03 1.26 4.95 -2.39 -0.01 1.25 16 14 C -0.16 -6.08 9.16 71.98 0.66 -5.42 16 15 C -0.49 -27.78 9.19 25.60 0.24 -27.54 16 16 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 17 C 0.01 0.73 5.47 84.65 0.46 1.19 16 18 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 19 Si 0.94 44.99 26.99 68.60 1.85 46.84 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.25 -10.86 6.82 99.48 0.68 -10.18 16 23 H 0.08 0.50 7.97 -2.38 -0.02 0.48 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.11 1.18 6.83 -2.39 -0.02 1.16 16 27 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.37 7.98 -2.39 -0.02 0.35 16 30 H 0.26 2.44 8.06 -2.91 -0.02 2.41 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.11 2.06 7.21 -2.39 -0.02 2.04 16 33 H 0.03 0.93 7.36 -2.39 -0.02 0.92 16 34 H 0.04 1.67 8.05 -2.38 -0.02 1.65 16 35 H 0.34 11.18 8.48 -89.69 -0.76 10.42 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.64 7.36 -2.39 -0.02 1.62 16 39 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -76.38 321.22 3.39 -72.99 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.24 Total: 11.97 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 6.72 Total: -9.30 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -5.42 Total: -122.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.84 kcal Total: -76.38 3.39 -72.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309377775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.859 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds