Wall clock time and date at job start Mon Mar 30 2020 04:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00468 * 2 1 4 4 H 1.48496 * 109.46922 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47111 * 120.00007 * 3 2 1 6 6 H 1.48501 * 109.47035 * 239.99921 * 3 2 1 7 7 C 1.37885 * 119.99490 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99774 * 186.46554 * 7 2 1 9 9 C 1.50701 * 119.99857 * 6.46895 * 7 2 1 10 10 C 1.53004 * 115.54577 * 279.35648 * 9 7 2 11 11 N 1.46894 * 109.47476 * 305.94149 * 10 9 7 12 12 C 1.47635 * 111.00346 * 292.39983 * 11 10 9 13 13 C 1.50816 * 108.05257 * 150.34429 * 12 11 10 14 14 C 1.53827 * 111.61980 * 95.05949 * 13 12 11 15 15 C 1.54166 * 111.96982 * 319.03824 * 14 13 12 16 16 C 1.50749 * 112.61204 * 318.49398 * 15 14 13 17 17 H 1.09007 * 109.61820 * 333.10650 * 16 15 14 18 18 C 1.53007 * 109.54372 * 212.88168 * 16 15 14 19 19 N 1.46896 * 109.47087 * 65.45255 * 18 16 15 20 20 C 1.39781 * 110.99866 * 163.50353 * 11 10 9 21 21 C 1.52995 * 117.50019 * 133.65414 * 9 7 2 22 22 C 1.52994 * 117.50108 * 65.03019 * 9 7 2 23 23 H 0.96998 * 120.00576 * 174.96642 * 1 2 3 24 24 H 1.09002 * 109.47155 * 65.94467 * 10 9 7 25 25 H 1.08998 * 109.46770 * 185.94055 * 10 9 7 26 26 H 1.09004 * 109.74235 * 269.98706 * 12 11 10 27 27 H 1.09000 * 109.73812 * 30.70784 * 12 11 10 28 28 H 1.08997 * 109.05207 * 334.50662 * 13 12 11 29 29 H 1.08999 * 108.98609 * 215.56886 * 13 12 11 30 30 H 1.08995 * 108.97658 * 198.39656 * 14 13 12 31 31 H 1.09001 * 108.97802 * 79.68227 * 14 13 12 32 32 H 1.09000 * 108.85499 * 197.68206 * 15 14 13 33 33 H 1.09010 * 108.85320 * 79.29652 * 15 14 13 34 34 H 1.09007 * 109.46816 * 185.44850 * 18 16 15 35 35 H 1.08990 * 109.46836 * 305.44812 * 18 16 15 36 36 H 1.00900 * 111.00257 * 56.04449 * 19 18 16 37 37 H 1.00897 * 111.00394 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.02580 * 309.72041 * 20 11 10 39 39 H 1.08998 * 109.01689 * 68.54286 * 20 11 10 40 40 H 1.09004 * 117.49845 * 359.97438 * 21 9 7 41 41 H 1.08996 * 117.49875 * 145.01696 * 21 9 7 42 42 H 1.09003 * 117.49640 * 214.97772 * 22 9 7 43 43 H 1.08996 * 117.49840 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2844 2.7464 -0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0793 -1.1972 0.1059 9 6 1.2580 -2.4951 -0.1459 10 6 0.6045 -3.0282 1.1307 11 7 1.6129 -3.1217 2.1948 12 6 2.6110 -4.1653 1.8878 13 6 3.9190 -3.7618 2.5209 14 6 4.1034 -4.4102 3.9035 15 6 2.7957 -4.4092 4.7200 16 6 2.0353 -3.1136 4.5951 17 1 2.7288 -2.3020 4.3744 18 6 1.3049 -2.8201 5.9071 19 7 2.2882 -2.5807 6.9719 20 6 1.0079 -3.2411 3.4492 21 6 1.8125 -3.5201 -1.1373 22 6 0.5336 -2.7489 -1.4694 23 1 -0.4851 -0.8367 -0.0737 24 1 -0.1906 -2.3507 1.4421 25 1 0.1858 -4.0162 0.9392 26 1 2.2827 -5.1206 2.2975 27 1 2.7350 -4.2500 0.8082 28 1 3.9417 -2.6776 2.6305 29 1 4.7377 -4.0707 1.8710 30 1 4.8658 -3.8596 4.4545 31 1 4.4378 -5.4392 3.7708 32 1 3.0358 -4.5770 5.7699 33 1 2.1619 -5.2246 4.3711 34 1 0.6793 -1.9359 5.7848 35 1 0.6807 -3.6728 6.1739 36 1 2.9205 -1.8361 6.7195 37 1 1.8304 -2.3849 7.8495 38 1 0.2564 -2.4590 3.5571 39 1 0.5193 -4.2131 3.5167 40 1 2.7171 -3.2533 -1.6839 41 1 1.7120 -4.5745 -0.8801 42 1 -0.4084 -3.2960 -1.4307 43 1 0.5965 -1.9747 -2.2341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309399378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:18 Heat of formation + Delta-G solvation = 17.634612 kcal Electronic energy + Delta-G solvation = -20154.278881 eV Core-core repulsion = 17427.429271 eV Total energy + Delta-G solvation = -2726.849610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31755 -36.90918 -34.86870 -33.35817 -31.76206 -30.93284 -27.32128 -25.43610 -24.63935 -24.41254 -22.07515 -21.26216 -20.17368 -19.26333 -18.83988 -16.53305 -15.75136 -15.24775 -14.99556 -14.68003 -14.46720 -13.97502 -13.65241 -13.42622 -13.28067 -12.96353 -12.61925 -12.13854 -11.97773 -11.70405 -11.43194 -11.07455 -10.86570 -10.67715 -10.55044 -10.39701 -10.37715 -10.20023 -10.02907 -9.86803 -9.80428 -9.33367 -8.66117 -8.40247 -8.33371 -8.15970 -7.24951 -6.18437 -3.86669 3.50327 3.51727 3.69890 4.40551 4.62487 4.74614 5.09489 5.17449 5.20887 5.24895 5.48686 5.49439 5.59675 5.61650 5.72399 5.84005 5.95443 6.00442 6.04232 6.12393 6.16865 6.22657 6.28565 6.29293 6.41644 6.48518 6.55531 6.59394 6.60005 6.63325 6.79620 6.85636 6.91886 6.95666 7.12890 7.29236 7.38752 7.42921 7.99871 8.31141 8.45779 8.59795 9.04705 9.83414 11.21140 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.007685 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.100155 B = 3642.600427 C = 4233.532941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.037 3.963 10 C 0.106 3.894 11 N -0.527 5.527 12 C 0.069 3.931 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.082 4.082 17 H 0.082 0.918 18 C 0.067 3.933 19 N -0.850 5.850 20 C 0.089 3.911 21 C -0.201 4.201 22 C -0.186 4.186 23 H 0.271 0.729 24 H 0.067 0.933 25 H -0.001 1.001 26 H 0.022 0.978 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.341 0.659 37 H 0.337 0.663 38 H 0.064 0.936 39 H 0.002 0.998 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 -7.092 9.005 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.022 4.022 11 N -0.249 5.249 12 C -0.058 4.058 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.102 4.102 17 H 0.101 0.899 18 C -0.064 4.064 19 N -0.379 5.379 20 C -0.042 4.042 21 C -0.239 4.239 22 C -0.224 4.224 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.017 0.983 26 H 0.040 0.960 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.985 -5.787 8.963 11.389 hybrid contribution -0.727 -1.522 -0.080 1.689 sum 3.258 -7.310 8.883 11.957 Atomic orbital electron populations 1.70735 1.06754 1.31138 1.46555 1.25600 0.96561 1.01889 0.93915 0.83620 0.74906 0.75825 0.76332 1.21169 1.21615 1.21800 1.21042 0.93824 0.89206 1.53295 0.93207 1.19119 0.97074 0.94891 0.85342 1.21667 0.92560 0.95754 0.92169 1.58295 1.17807 1.47821 1.00981 1.21796 0.92089 0.90914 1.01011 1.21403 0.96781 1.02476 0.94719 1.21899 0.97227 0.99741 0.96254 1.21365 0.96104 0.96715 1.00344 1.21043 0.97443 0.99030 0.92658 0.89945 1.21792 0.93501 0.99642 0.91446 1.58704 1.22298 1.51446 1.05413 1.20859 0.95310 0.98334 0.89654 1.22891 0.97471 0.95331 1.08174 1.22798 0.93532 1.02590 1.03491 0.91820 0.91451 0.98262 0.95980 0.89969 0.90199 0.92936 0.92743 0.93296 0.91083 0.93543 0.95376 0.91554 0.84682 0.85180 0.91810 0.98008 0.90317 0.91853 0.91910 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 13.61 55.43 0.75 -26.11 16 2 C 0.02 0.68 5.42 -17.82 -0.10 0.58 16 3 Si 1.06 25.29 29.91 -169.99 -5.08 20.20 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.54 -14.55 8.48 -34.44 -0.29 -14.84 16 8 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 9 C 0.04 0.88 0.64 -155.66 -0.10 0.78 16 10 C 0.11 2.35 4.78 -3.83 -0.02 2.33 16 11 N -0.53 -10.58 3.59 -240.00 -0.86 -11.45 16 12 C 0.07 1.25 5.16 -4.52 -0.02 1.22 16 13 C -0.12 -1.91 5.41 -27.40 -0.15 -2.06 16 14 C -0.11 -1.59 5.91 -25.69 -0.15 -1.75 16 15 C -0.11 -1.52 4.81 -27.25 -0.13 -1.65 16 16 C -0.08 -1.24 2.05 -90.99 -0.19 -1.43 16 17 H 0.08 1.40 7.12 -51.93 -0.37 1.03 16 18 C 0.07 0.86 6.04 -3.82 -0.02 0.84 16 19 N -0.85 -9.42 8.84 -10.37 -0.09 -9.51 16 20 C 0.09 1.57 4.32 -6.74 -0.03 1.55 16 21 C -0.20 -4.34 8.19 -26.74 -0.22 -4.56 16 22 C -0.19 -4.28 9.06 -26.74 -0.24 -4.52 16 23 H 0.27 7.87 5.96 -40.82 -0.24 7.63 16 24 H 0.07 1.63 6.97 -51.93 -0.36 1.27 16 25 H 0.00 -0.01 8.05 -51.93 -0.42 -0.43 16 26 H 0.02 0.38 6.66 -51.93 -0.35 0.03 16 27 H 0.08 1.60 4.80 -51.93 -0.25 1.35 16 28 H 0.08 1.50 7.27 -51.93 -0.38 1.13 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 33 H 0.05 0.68 6.58 -51.92 -0.34 0.33 16 34 H 0.03 0.37 8.05 -51.93 -0.42 -0.04 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.34 3.67 8.99 -39.29 -0.35 3.31 16 37 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 38 H 0.06 1.19 7.53 -51.93 -0.39 0.80 16 39 H 0.00 0.04 7.54 -51.93 -0.39 -0.35 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.06 1.24 7.56 -51.93 -0.39 0.85 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -28.58 321.63 -9.64 -38.22 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.55 Total: 7.29 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.66 Total: -23.50 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.20 Total: -47.07 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.58 -9.64 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309399378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.854 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds