Wall clock time and date at job start Mon Mar 30 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 8 8 H 1.08010 * 119.99826 * 119.99982 * 7 5 4 9 9 C 1.37878 * 120.00334 * 299.99938 * 7 5 4 10 10 N 1.31514 * 119.99623 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00194 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47103 * 60.00292 * 11 9 7 13 13 H 1.48496 * 109.47271 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47282 * 300.00506 * 11 9 7 15 15 N 1.46903 * 109.46802 * 64.99965 * 5 4 2 16 16 C 1.46899 * 110.99615 * 205.00072 * 15 5 4 17 17 C 1.50699 * 109.46864 * 180.02562 * 16 15 5 18 18 N 1.30831 * 125.96369 * 90.02109 * 17 16 15 19 19 C 1.33242 * 109.82900 * 179.97438 * 18 17 16 20 20 N 1.30718 * 108.95072 * 0.02562 * 19 18 17 21 21 N 1.34428 * 125.95972 * 269.71601 * 17 16 15 22 22 C 1.46505 * 126.82428 * 0.02562 * 21 17 16 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 31 31 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 32 32 H 0.97002 * 119.99578 * 180.02562 * 10 9 7 33 33 H 1.00889 * 111.00020 * 328.95639 * 15 5 4 34 34 H 1.09002 * 109.47275 * 299.99787 * 16 15 5 35 35 H 1.08994 * 109.47105 * 60.00409 * 16 15 5 36 36 H 1.08004 * 125.53027 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47251 * 90.00102 * 22 21 17 38 38 H 1.09002 * 109.47015 * 209.99938 * 22 21 17 39 39 H 1.09000 * 109.46789 * 329.99978 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 6 4.0772 -1.4302 -2.4724 8 1 4.7652 -0.8733 -3.0913 9 6 3.6678 -2.6893 -2.8573 10 7 2.8297 -3.3671 -2.1039 11 14 4.3025 -3.4317 -4.4496 12 1 5.7825 -3.5381 -4.3908 13 1 3.7155 -4.7831 -4.6342 14 1 3.9136 -2.5636 -5.5900 15 7 3.9489 -1.6896 -0.0597 16 6 5.3051 -1.3709 0.4064 17 6 5.6636 -2.2701 1.5614 18 7 6.2461 -3.4383 1.4736 19 6 6.4112 -3.9536 2.6912 20 7 5.9335 -3.1169 3.5746 21 7 5.4458 -2.0093 2.8620 22 6 4.8206 -0.8096 3.4243 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6053 -1.7198 -1.2953 31 1 1.7516 -0.1582 -2.1370 32 1 2.5419 -4.2531 -2.3745 33 1 3.2814 -1.6172 0.6934 34 1 6.0143 -1.5246 -0.4069 35 1 5.3430 -0.3308 0.7299 36 1 6.8661 -4.9078 2.9125 37 1 3.7440 -0.9622 3.4998 38 1 5.2306 -0.6169 4.4157 39 1 5.0221 0.0430 2.7758 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309400766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:38 Heat of formation + Delta-G solvation = 85.861491 kcal Electronic energy + Delta-G solvation = -19367.385275 eV Core-core repulsion = 16539.953862 eV Total energy + Delta-G solvation = -2827.431414 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63194 -37.15354 -34.32918 -33.58858 -32.39453 -30.68817 -28.31307 -26.98769 -26.69110 -25.04861 -24.34313 -21.58400 -20.96762 -19.89773 -18.78714 -16.59868 -16.12502 -15.53467 -15.06250 -14.88363 -14.44559 -14.03130 -13.58812 -13.38816 -13.07541 -12.88726 -12.81815 -12.50878 -12.04744 -11.90142 -11.73446 -11.12670 -10.93159 -10.90790 -10.81415 -10.62565 -10.37393 -9.93965 -9.71149 -9.50634 -9.39867 -9.34112 -9.12211 -8.87743 -8.26737 -6.95309 -5.78012 -3.92926 1.99391 2.64948 3.40125 3.43408 3.46637 3.49675 4.56019 4.59470 4.74129 5.16661 5.20521 5.33486 5.41770 5.46897 5.49534 5.57349 5.61670 5.83491 6.01011 6.01181 6.24056 6.25479 6.30006 6.40993 6.62589 6.65927 6.67281 6.70950 6.84022 6.93202 7.14495 7.19755 7.30691 7.81636 7.95735 8.34674 8.42554 8.58547 8.78053 9.14116 9.76887 11.22361 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.009023 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.825686 B = 3102.545338 C = 4573.524083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.144 4.144 4 C -0.109 4.109 5 C 0.225 3.775 6 H -0.007 1.007 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.094 3.906 10 N -0.846 5.846 11 Si 0.879 3.121 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.281 1.281 15 N -0.637 5.637 16 C 0.144 3.856 17 C 0.305 3.695 18 N -0.527 5.527 19 C 0.194 3.806 20 N -0.340 5.340 21 N -0.388 5.388 22 C 0.098 3.902 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.255 0.745 33 H 0.305 0.695 34 H 0.106 0.894 35 H 0.025 0.975 36 H 0.211 0.789 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 6.491 8.658 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.147 4.147 5 C 0.119 3.881 6 H 0.011 0.989 7 C -0.571 4.571 8 H 0.067 0.933 9 C -0.113 4.113 10 N -0.481 5.481 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.207 1.207 15 N -0.271 5.271 16 C 0.011 3.989 17 C 0.029 3.971 18 N -0.254 5.254 19 C -0.109 4.109 20 N -0.169 5.169 21 N -0.180 5.180 22 C -0.044 4.044 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.043 0.957 36 H 0.228 0.772 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.295 5.588 8.781 10.412 hybrid contribution 0.109 0.374 -0.347 0.522 sum 0.405 5.962 8.434 10.336 Atomic orbital electron populations 1.21788 0.96477 1.01280 1.00230 1.21317 0.94827 0.95555 1.00682 1.21880 1.00983 0.96930 1.00304 1.21841 0.98010 1.01682 0.93215 1.19138 0.91602 0.88259 0.89086 0.98898 1.20875 1.29271 1.01946 1.04996 0.93279 1.24819 0.94218 0.96680 0.95580 1.69913 1.30951 1.11325 1.35908 0.86904 0.79502 0.78312 0.84525 1.20322 1.21509 1.20695 1.60964 0.97951 1.59144 1.09010 1.20402 0.97135 0.90363 0.90957 1.24771 0.93131 0.93453 0.85769 1.70572 1.22106 1.08182 1.24516 1.25906 0.98519 1.00055 0.86435 1.77898 1.21283 0.96905 1.20770 1.50266 1.46338 1.15850 1.05518 1.21856 0.98348 0.83640 1.00598 0.93256 0.92840 0.94201 0.92672 0.93104 0.94306 0.92855 0.88183 0.93580 0.93496 0.87682 0.87572 0.95705 0.77216 0.90456 0.89470 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.19 37.16 0.34 -1.78 16 2 C -0.11 -1.76 2.82 -90.62 -0.26 -2.02 16 3 C -0.14 -2.12 8.95 37.16 0.33 -1.78 16 4 C -0.11 -2.31 3.97 -26.73 -0.11 -2.42 16 5 C 0.23 5.08 2.08 -68.86 -0.14 4.93 16 6 H -0.01 -0.14 6.00 -51.93 -0.31 -0.46 16 7 C -0.53 -13.96 8.67 -34.44 -0.30 -14.26 16 8 H 0.05 1.30 7.81 -52.48 -0.41 0.89 16 9 C 0.09 2.52 5.23 -17.82 -0.09 2.43 16 10 N -0.85 -23.32 10.86 55.43 0.60 -22.71 16 11 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 N -0.64 -13.85 5.60 -109.22 -0.61 -14.46 16 16 C 0.14 2.77 5.80 -4.98 -0.03 2.74 16 17 C 0.31 5.85 7.50 -155.70 -1.17 4.69 16 18 N -0.53 -10.87 11.19 -11.97 -0.13 -11.00 16 19 C 0.19 3.39 13.03 -91.81 -1.20 2.19 16 20 N -0.34 -5.97 12.70 29.29 0.37 -5.60 16 21 N -0.39 -6.48 4.04 -65.10 -0.26 -6.74 16 22 C 0.10 1.15 11.33 59.85 0.68 1.82 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.93 6.29 -51.93 -0.33 0.60 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 30 H 0.10 2.44 6.22 -51.93 -0.32 2.12 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.31 6.28 6.41 -39.30 -0.25 6.03 16 34 H 0.11 2.27 8.00 -51.93 -0.42 1.86 16 35 H 0.03 0.41 7.03 -51.93 -0.37 0.05 16 36 H 0.21 2.76 8.06 -52.48 -0.42 2.33 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.89 7.10 -51.93 -0.37 0.52 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -30.38 316.66 -8.27 -38.65 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.05 Total: 4.31 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.94 Total: -3.44 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.03 Total: -60.52 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.38 -8.27 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309400766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.512 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds