Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46866 * 2 1 4 4 C 1.52998 * 109.47038 * 119.99425 * 2 1 3 5 5 C 1.53000 * 109.46946 * 175.00153 * 4 2 1 6 6 H 1.09000 * 109.47284 * 55.00642 * 5 4 2 7 7 C 1.50703 * 109.47106 * 175.00508 * 5 4 2 8 8 H 1.08001 * 119.99583 * 239.99996 * 7 5 4 9 9 C 1.37877 * 120.00267 * 59.99827 * 7 5 4 10 10 N 1.31513 * 119.99823 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00107 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47252 * 89.99561 * 11 9 7 13 13 H 1.48492 * 109.47335 * 210.00279 * 11 9 7 14 14 H 1.48499 * 109.47039 * 329.99983 * 11 9 7 15 15 N 1.46901 * 109.47187 * 295.00073 * 5 4 2 16 16 C 1.46905 * 110.99870 * 154.99992 * 15 5 4 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 5 18 18 N 1.30825 * 125.96239 * 269.69191 * 17 16 15 19 19 C 1.33248 * 109.82894 * 179.86631 * 18 17 16 20 20 N 1.30704 * 108.94576 * 0.40246 * 19 18 17 21 21 N 1.34430 * 125.96140 * 89.99948 * 17 16 15 22 22 C 1.46501 * 126.82122 * 0.02562 * 21 17 16 23 23 H 1.08998 * 109.47670 * 300.00042 * 1 2 3 24 24 H 1.08999 * 109.47146 * 60.00705 * 1 2 3 25 25 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47152 * 240.00049 * 2 1 3 27 27 H 1.09002 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47072 * 299.99648 * 3 2 1 29 29 H 1.09000 * 109.47674 * 59.99891 * 3 2 1 30 30 H 1.09000 * 109.46809 * 55.00655 * 4 2 1 31 31 H 1.08999 * 109.47359 * 295.00139 * 4 2 1 32 32 H 0.96999 * 119.99521 * 179.97438 * 10 9 7 33 33 H 1.00901 * 111.00067 * 278.95167 * 15 5 4 34 34 H 1.09001 * 109.46798 * 300.00327 * 16 15 5 35 35 H 1.08998 * 109.46961 * 60.00043 * 16 15 5 36 36 H 1.08006 * 125.52538 * 180.12649 * 19 18 17 37 37 H 1.09010 * 109.47078 * 90.00069 * 22 21 17 38 38 H 1.09006 * 109.47254 * 209.99555 * 22 21 17 39 39 H 1.09000 * 109.47449 * 330.00241 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 1 3.9954 0.1613 1.0528 7 6 4.0773 -1.4301 2.4723 8 1 4.7653 -0.8732 3.0912 9 6 3.6679 -2.6891 2.8573 10 7 2.8298 -3.3670 2.1039 11 14 4.3027 -3.4315 4.4495 12 1 3.3919 -3.0656 5.5639 13 1 4.3569 -4.9097 4.3194 14 1 5.6640 -2.9092 4.7311 15 7 3.9490 -1.6894 0.0597 16 6 5.3052 -1.3706 -0.4065 17 6 5.6632 -2.2690 -1.5622 18 7 6.2502 -3.4350 -1.4758 19 6 6.4103 -3.9518 -2.6935 20 7 5.9330 -3.1142 -3.5761 21 7 5.4404 -2.0095 -2.8623 22 6 4.8100 -0.8119 -3.4231 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6054 -1.7197 1.2952 31 1 1.7516 -0.1581 2.1370 32 1 2.5421 -4.2529 2.3746 33 1 3.8709 -2.6651 0.3047 34 1 5.3430 -0.3304 -0.7300 35 1 6.0144 -1.5242 0.4068 36 1 6.8652 -4.9059 -2.9155 37 1 5.5739 -0.0621 -3.6296 38 1 4.2961 -1.0713 -4.3487 39 1 4.0913 -0.4110 -2.7084 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309400767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = 58.029922 kcal Electronic energy + Delta-G solvation = -19368.554216 eV Core-core repulsion = 16539.915935 eV Total energy + Delta-G solvation = -2828.638281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.97800 -38.56842 -35.81516 -34.93866 -34.21034 -32.19386 -29.91992 -28.09616 -27.79312 -26.86924 -25.82587 -22.88680 -22.49102 -21.24674 -20.26577 -18.43510 -17.82694 -17.08578 -16.74015 -15.88625 -15.66302 -15.37674 -15.22710 -14.72360 -14.57454 -14.24611 -13.96009 -13.79661 -13.58977 -12.95576 -12.91784 -12.84494 -12.67668 -12.53303 -12.46587 -12.17627 -11.97213 -11.59604 -11.22771 -11.09734 -10.96759 -10.86330 -10.67003 -10.49272 -10.33724 -8.84749 -7.98839 -6.23814 0.64650 1.38673 1.43460 1.49540 1.50613 2.00454 2.43436 3.13192 3.29908 3.66295 3.98241 4.16187 4.34946 4.39389 4.43382 4.45466 4.50886 4.64539 4.77045 4.86960 4.94471 4.98093 5.10685 5.16209 5.24607 5.35175 5.38724 5.49865 5.54441 5.55237 5.70506 5.85924 5.89223 5.96309 6.13810 6.27233 6.59309 6.95758 7.06962 7.21007 7.51334 8.90736 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.009025 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.948925 B = 3101.710695 C = 4571.782400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.083 4.083 5 C 0.214 3.786 6 H 0.037 0.963 7 C -0.571 4.571 8 H 0.041 0.959 9 C 0.039 3.961 10 N -0.893 5.893 11 Si 0.936 3.064 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 N -0.671 5.671 16 C 0.142 3.858 17 C 0.291 3.709 18 N -0.581 5.581 19 C 0.188 3.812 20 N -0.348 5.348 21 N -0.371 5.371 22 C 0.089 3.911 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.349 0.651 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 6.529 -9.068 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.191 4.191 4 C -0.122 4.122 5 C 0.106 3.894 6 H 0.055 0.945 7 C -0.610 4.610 8 H 0.059 0.941 9 C -0.163 4.163 10 N -0.532 5.532 11 Si 0.763 3.237 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 N -0.306 5.306 16 C 0.010 3.990 17 C 0.014 3.986 18 N -0.311 5.311 19 C -0.114 4.114 20 N -0.177 5.177 21 N -0.161 5.161 22 C -0.052 4.052 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.402 6.577 -10.079 12.042 hybrid contribution 0.802 -1.136 1.994 2.431 sum 1.203 5.441 -8.085 9.819 Atomic orbital electron populations 1.21781 0.96035 1.00497 1.01253 1.21033 0.94674 0.96145 0.98858 1.21771 1.00760 0.95545 1.01061 1.21366 0.96762 0.99530 0.94499 1.19101 0.92990 0.91296 0.86010 0.94493 1.22105 1.27910 1.01813 1.09196 0.94051 1.25468 0.94493 0.97508 0.98793 1.69814 1.32728 1.12413 1.38216 0.85910 0.78708 0.77526 0.81546 1.20373 1.21363 1.20151 1.61090 1.18923 1.11923 1.38641 1.20270 0.93450 0.95462 0.89797 1.24544 0.93556 0.93335 0.87205 1.70502 1.23993 1.09668 1.26893 1.26521 0.98472 1.01088 0.85332 1.77846 1.21319 0.97291 1.21215 1.50410 1.44398 1.16610 1.04665 1.22285 0.99022 0.82242 1.01628 0.93468 0.91764 0.94531 0.91751 0.93147 0.91858 0.93773 0.92485 0.95962 0.92925 0.82967 0.87994 0.94131 0.73971 0.88258 0.88129 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.19 71.98 0.66 -3.53 16 2 C -0.09 -3.02 2.86 -10.79 -0.03 -3.05 16 3 C -0.13 -3.80 8.95 71.98 0.64 -3.16 16 4 C -0.08 -3.60 4.06 30.59 0.12 -3.47 16 5 C 0.21 9.61 2.08 44.17 0.09 9.70 16 6 H 0.04 1.56 6.00 -2.39 -0.01 1.54 16 7 C -0.57 -29.54 8.64 25.60 0.22 -29.32 16 8 H 0.04 2.17 7.81 -2.91 -0.02 2.15 16 9 C 0.04 2.05 5.03 84.65 0.43 2.48 16 10 N -0.89 -47.97 9.71 21.45 0.21 -47.76 16 11 Si 0.94 43.01 29.54 68.60 2.03 45.04 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 N -0.67 -28.93 5.60 -499.45 -2.80 -31.72 16 16 C 0.14 5.38 5.60 85.55 0.48 5.86 16 17 C 0.29 10.87 7.50 138.23 1.04 11.91 16 18 N -0.58 -23.24 11.19 -191.78 -2.15 -25.38 16 19 C 0.19 6.28 13.03 180.77 2.36 8.64 16 20 N -0.35 -11.69 12.70 -61.24 -0.78 -12.47 16 21 N -0.37 -11.93 4.04 -359.86 -1.45 -13.38 16 22 C 0.09 1.94 11.16 127.77 1.43 3.36 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.06 2.30 7.62 -2.39 -0.02 2.28 16 27 H 0.05 1.45 6.46 -2.39 -0.02 1.44 16 28 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 2.87 6.22 -2.39 -0.01 2.85 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.35 17.80 6.39 -89.69 -0.57 17.23 16 34 H 0.10 3.17 7.67 -2.39 -0.02 3.15 16 35 H 0.04 1.72 8.00 -2.39 -0.02 1.71 16 36 H 0.24 5.85 8.06 -2.91 -0.02 5.83 16 37 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.10 2.24 7.72 -2.39 -0.02 2.22 16 Total: -1.00 -60.94 317.58 2.95 -57.99 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.46 Total: 28.29 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 7.43 Total: -0.59 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -6.97 Total: -130.72 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -60.94 2.95 -57.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309400767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.016 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds