Wall clock time and date at job start Mon Mar 30 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47068 * 2 1 4 4 C 1.50698 * 109.47226 * 239.99437 * 2 1 3 5 5 H 1.08002 * 119.99986 * 275.00000 * 4 2 1 6 6 C 1.37873 * 120.00109 * 95.00298 * 4 2 1 7 7 N 1.31512 * 120.00418 * 184.91561 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.91405 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 N 1.46906 * 109.46989 * 119.99633 * 2 1 3 13 13 C 1.46903 * 111.00007 * 275.00087 * 12 2 1 14 14 C 1.50695 * 109.47210 * 179.97438 * 13 12 2 15 15 C 1.35353 * 126.75373 * 94.99984 * 14 13 12 16 16 N 1.35303 * 106.17824 * 180.02562 * 15 14 13 17 17 C 1.46502 * 125.86983 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47266 * 74.99890 * 17 16 15 19 19 C 1.52998 * 109.47359 * 194.99872 * 17 16 15 20 20 C 1.53000 * 109.47123 * 314.99918 * 17 16 15 21 21 N 1.28715 * 108.26530 * 359.97438 * 16 15 14 22 22 N 1.28642 * 110.17746 * 359.72168 * 21 16 15 23 23 H 1.09005 * 109.47123 * 55.05723 * 1 2 3 24 24 H 1.09008 * 109.47122 * 295.05808 * 1 2 3 25 25 H 1.08996 * 109.47521 * 175.05994 * 1 2 3 26 26 H 0.96999 * 120.00184 * 179.97438 * 7 6 4 27 27 H 1.00895 * 110.99958 * 151.04860 * 12 2 1 28 28 H 1.09005 * 109.46929 * 300.00027 * 13 12 2 29 29 H 1.08998 * 109.46982 * 59.99866 * 13 12 2 30 30 H 1.08006 * 126.90623 * 0.03024 * 15 14 13 31 31 H 1.08998 * 109.47378 * 59.99460 * 18 17 16 32 32 H 1.09000 * 109.47680 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47420 * 300.00111 * 18 17 16 34 34 H 1.09000 * 109.47207 * 59.99596 * 19 17 16 35 35 H 1.08994 * 109.47629 * 180.02562 * 19 17 16 36 36 H 1.09003 * 109.47132 * 300.00139 * 19 17 16 37 37 H 1.08998 * 109.47264 * 59.99685 * 20 17 16 38 38 H 1.08996 * 109.47191 * 180.02562 * 20 17 16 39 39 H 1.09000 * 109.46712 * 299.99956 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2288 6 6 2.3603 0.0119 -2.3580 7 7 2.7060 -0.6134 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3947 -1.7821 10 1 2.1060 2.3988 -3.6929 11 1 1.1986 2.3274 -1.4452 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 6 2.5872 -0.5216 3.5561 15 6 3.8664 -0.5821 3.9942 16 7 3.8489 -1.3571 5.1031 17 6 5.0105 -1.7063 5.9248 18 6 5.4185 -0.4986 6.7707 19 6 4.6518 -2.8753 6.8444 20 6 6.1743 -2.1099 5.0173 21 7 2.6361 -1.7339 5.3128 22 7 1.8581 -1.2474 4.4112 23 1 -0.3634 0.5886 -0.8424 24 1 -0.3634 0.4353 0.9310 25 1 -0.3634 -1.0238 -0.0885 26 1 2.9364 -0.1052 -4.2555 27 1 2.9172 -1.1204 1.0289 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 4.7279 -0.1072 3.5482 31 1 4.5894 -0.2110 7.4172 32 1 6.2824 -0.7585 7.3824 33 1 5.6741 0.3343 6.1156 34 1 4.3610 -3.7358 6.2418 35 1 5.5158 -3.1349 7.4560 36 1 3.8226 -2.5878 7.4910 37 1 6.4298 -1.2772 4.3621 38 1 7.0383 -2.3702 5.6286 39 1 5.8836 -2.9704 4.4146 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309414269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:14 Heat of formation + Delta-G solvation = 89.822287 kcal Electronic energy + Delta-G solvation = -18637.862851 eV Core-core repulsion = 15810.603190 eV Total energy + Delta-G solvation = -2827.259661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.10632 -37.63374 -36.09938 -32.86680 -31.72436 -31.28388 -29.05231 -27.90532 -27.66705 -25.46186 -24.37234 -23.55874 -21.04133 -19.71081 -19.62296 -17.25787 -16.83738 -16.26956 -15.24752 -14.73654 -14.52835 -14.32591 -13.84721 -13.69907 -13.65789 -12.95131 -12.81162 -12.66218 -12.45796 -12.26345 -12.20661 -11.76813 -11.69873 -11.55833 -11.24565 -11.01439 -10.72609 -10.61162 -10.55617 -10.26052 -9.87547 -9.75022 -9.06610 -8.88018 -8.59294 -7.37823 -6.10880 -4.11372 1.78277 2.33299 2.82596 3.24195 3.34045 3.36631 4.03628 4.27450 4.37983 4.38080 4.57296 4.97501 5.03781 5.07516 5.15352 5.20904 5.23695 5.27937 5.35613 5.36193 5.54551 5.58457 5.64423 5.72823 5.86644 6.06269 6.25815 6.41018 6.51995 6.74116 6.78138 6.88542 6.94240 7.46445 7.65707 7.97868 8.42009 8.67218 8.79727 8.99280 9.53143 11.02207 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.004587 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.149874 B = 6103.256557 C = 6363.595153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.181 3.819 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.676 5.676 13 C 0.139 3.861 14 C 0.001 3.999 15 C -0.052 4.052 16 N -0.287 5.287 17 C 0.165 3.835 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.161 4.161 21 N -0.093 5.093 22 N -0.255 5.255 23 H 0.040 0.960 24 H 0.022 0.978 25 H 0.052 0.948 26 H 0.264 0.736 27 H 0.339 0.661 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.183 0.817 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 1.185 19.835 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.022 0.978 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.308 5.308 13 C 0.008 3.992 14 C -0.138 4.138 15 C -0.203 4.203 16 N -0.082 5.082 17 C 0.082 3.918 18 C -0.217 4.217 19 C -0.206 4.206 20 C -0.219 4.219 21 N -0.071 5.071 22 N -0.121 5.121 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.200 0.800 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.485 0.141 20.735 22.045 hybrid contribution 1.690 2.135 -1.074 2.927 sum 9.176 2.275 19.660 21.815 Atomic orbital electron populations 1.21839 0.97908 1.00852 0.97802 1.19582 0.92635 0.92383 0.88110 0.97801 1.21080 1.43498 0.95929 0.95020 0.90250 1.25027 0.94412 0.98182 0.95306 1.69903 1.46106 1.35799 1.01643 0.86892 0.78971 0.86584 0.77289 1.20386 1.21418 1.18854 1.60670 1.33089 1.32465 1.04601 1.20187 1.00250 0.92226 0.86571 1.22085 0.90030 1.02188 0.99459 1.23250 1.01034 1.03362 0.92682 1.47545 1.08354 1.32894 1.19394 1.21077 0.82533 0.97223 0.90993 1.22240 1.02765 0.96580 1.00088 1.21985 1.02930 0.96474 0.99213 1.22252 0.96584 1.03177 0.99879 1.78224 0.87242 1.20461 1.21195 1.75083 1.25421 1.10097 1.01536 0.94093 0.95858 0.92910 0.92584 0.84229 0.94562 0.90030 0.79985 0.91383 0.89862 0.91402 0.91144 0.90391 0.90666 0.91108 0.89727 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.42 37.16 0.35 -2.50 16 2 C 0.18 4.32 2.26 -68.86 -0.16 4.16 16 3 H 0.00 0.10 4.95 -51.93 -0.26 -0.15 16 4 C -0.52 -14.42 8.84 -34.44 -0.30 -14.73 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 8 Si 0.88 21.20 26.99 -169.99 -4.59 16.61 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.18 6.82 56.52 0.39 -5.79 16 12 N -0.68 -14.47 6.29 -109.22 -0.69 -15.16 16 13 C 0.14 2.52 6.04 -4.98 -0.03 2.49 16 14 C 0.00 0.01 6.76 -82.78 -0.56 -0.54 16 15 C -0.05 -0.72 10.63 -17.05 -0.18 -0.90 16 16 N -0.29 -3.75 3.18 -48.55 -0.15 -3.90 16 17 C 0.16 1.43 1.23 -131.82 -0.16 1.27 16 18 C -0.16 -1.07 8.72 37.15 0.32 -0.75 16 19 C -0.15 -1.18 8.05 37.16 0.30 -0.88 16 20 C -0.16 -1.14 8.29 37.16 0.31 -0.83 16 21 N -0.09 -1.53 12.18 60.35 0.74 -0.79 16 22 N -0.25 -4.79 12.41 33.29 0.41 -4.38 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.02 0.47 7.36 -51.92 -0.38 0.08 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.34 7.27 8.34 -39.29 -0.33 6.95 16 28 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.08 1.50 7.36 -51.93 -0.38 1.12 16 30 H 0.18 1.93 7.59 -52.48 -0.40 1.53 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.07 0.48 7.39 -51.93 -0.38 0.10 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -32.65 320.48 -5.23 -37.89 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.34 Total: 2.45 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.21 Total: -11.23 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 1.08 Total: -50.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.59 Total: 16.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.65 -5.23 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.708 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds