Wall clock time and date at job start Mon Mar 30 2020 03:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 114.00080 * 2 1 4 4 C 1.52995 * 112.84892 * 64.89391 * 3 2 1 5 5 N 1.46904 * 109.47426 * 52.31754 * 4 3 2 6 6 C 1.46897 * 111.00347 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47097 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47808 * 305.00027 * 7 6 5 9 9 C 1.47204 * 109.47300 * 64.99996 * 7 6 5 10 10 N 5.95561 * 124.02470 * 81.22544 * 2 1 3 11 11 C 1.53006 * 109.47036 * 184.99826 * 7 6 5 12 12 C 1.50708 * 109.47118 * 175.00202 * 11 7 6 13 13 H 1.07998 * 119.99511 * 0.02562 * 12 11 7 14 14 C 1.37870 * 120.00049 * 180.02562 * 12 11 7 15 15 N 1.31520 * 119.99778 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00032 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47138 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46986 * 120.00338 * 16 14 12 19 19 H 1.48498 * 109.46923 * 239.99863 * 16 14 12 20 20 C 1.53779 * 113.68878 * 196.16289 * 3 2 1 21 21 C 1.53779 * 87.08367 * 89.12720 * 20 3 2 22 22 C 1.53784 * 113.61385 * 293.69878 * 3 2 1 23 23 H 1.09002 * 109.46826 * 304.87077 * 1 2 3 24 24 H 1.09002 * 109.46600 * 64.86394 * 1 2 3 25 25 H 1.08996 * 109.47417 * 184.86374 * 1 2 3 26 26 H 1.09001 * 109.47273 * 292.31921 * 4 3 2 27 27 H 1.09000 * 109.47098 * 172.31372 * 4 3 2 28 28 H 1.00896 * 110.99976 * 56.04409 * 5 4 3 29 29 H 1.09001 * 109.47156 * 59.99785 * 6 5 4 30 30 H 1.09005 * 109.46980 * 299.99873 * 6 5 4 31 31 H 1.09000 * 109.47250 * 294.99807 * 11 7 6 32 32 H 1.08993 * 109.46861 * 55.00104 * 11 7 6 33 33 H 0.96998 * 119.99610 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.61505 * 203.67943 * 20 3 2 35 35 H 1.08999 * 113.61351 * 334.57469 * 20 3 2 36 36 H 1.08998 * 113.61183 * 270.88518 * 21 20 3 37 37 H 1.08994 * 113.69204 * 139.98993 * 21 20 3 38 38 H 1.08999 * 113.61467 * 25.34922 * 22 3 2 39 39 H 1.08997 * 113.61174 * 156.25129 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7055 2.0915 1.2767 5 7 2.0699 1.2834 2.4481 6 6 1.7909 2.0081 3.6951 7 6 2.1819 1.1362 4.8900 8 1 1.6709 0.1759 4.8219 9 6 3.6377 0.9188 4.8833 10 7 4.7615 0.7530 4.8782 11 6 1.7771 1.8384 6.1878 12 6 2.0497 0.9282 7.3576 13 1 2.4700 -0.0527 7.1919 14 6 1.7625 1.3478 8.6391 15 7 1.2501 2.5422 8.8406 16 14 2.0998 0.2193 10.0890 17 1 2.6713 -1.0603 9.5979 18 1 3.0646 0.8718 11.0101 19 1 0.8309 -0.0508 10.8116 20 6 3.4972 1.3197 -0.3920 21 6 3.0306 1.4696 -1.8496 22 6 1.7435 2.0985 -1.2902 23 1 -0.3633 0.5876 0.8432 24 1 -0.3632 0.4365 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 0.6416 2.3259 1.3138 27 1 2.2818 3.0166 1.2801 28 1 3.0368 0.9986 2.4044 29 1 0.7277 2.2424 3.7491 30 1 2.3682 2.9325 3.7150 31 1 2.3541 2.7563 6.2995 32 1 0.7145 2.0790 6.1545 33 1 1.0484 2.8375 9.7423 34 1 4.0397 2.1871 -0.0158 35 1 4.0105 0.3790 -0.1923 36 1 2.8674 0.5182 -2.3558 37 1 3.6363 2.1618 -2.4344 38 1 0.8410 1.7866 -1.8158 39 1 1.8065 3.1788 -1.1596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309428166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:24 Heat of formation + Delta-G solvation = -8.975417 kcal Electronic energy + Delta-G solvation = -18430.624308 eV Core-core repulsion = 15566.787706 eV Total energy + Delta-G solvation = -2863.836602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.13078 -37.25209 -35.59351 -34.93966 -33.49298 -31.56401 -28.07462 -27.07800 -25.93312 -25.31754 -22.84840 -22.13950 -21.62650 -19.52990 -16.85243 -16.68965 -16.38670 -15.87117 -15.36428 -15.19556 -14.71109 -14.35499 -14.10897 -13.63339 -13.34003 -12.99760 -12.70834 -12.52297 -12.32744 -12.10648 -11.87805 -11.51478 -11.50810 -11.25421 -11.10625 -11.01845 -10.93724 -10.72675 -10.51831 -10.25509 -10.20338 -9.62953 -9.35951 -9.15981 -8.45458 -8.27117 -6.09273 -4.12142 3.29079 3.37207 3.42300 3.55904 3.59651 3.65563 4.11653 4.40663 4.41753 4.61061 4.62016 4.72422 4.83207 5.20161 5.27937 5.28941 5.37125 5.44250 5.47013 5.50239 5.57339 5.61966 5.68418 5.74148 5.79550 5.87420 6.04395 6.07740 6.15681 6.37471 6.55857 7.08627 7.24596 7.43783 7.50150 7.54121 7.86361 8.23911 8.42363 8.92810 9.53438 11.01719 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.004034 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.863800 B = 6939.961171 C = 7129.807980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.096 3.904 4 C 0.044 3.956 5 N -0.681 5.681 6 C 0.067 3.933 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.242 3.758 10 N -0.477 5.477 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.165 4.165 23 H 0.050 0.950 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.340 0.660 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 0.337 -19.999 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.056 3.944 4 C -0.086 4.086 5 N -0.312 5.312 6 C -0.063 4.063 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.075 4.075 10 N -0.154 5.154 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.167 4.167 21 C -0.171 4.171 22 C -0.203 4.203 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.622 -0.314 -19.856 19.925 hybrid contribution 0.190 0.433 1.029 1.132 sum -1.432 0.118 -18.828 18.882 Atomic orbital electron populations 1.22675 0.81242 1.02656 0.99706 1.87912 1.19542 1.24625 1.94568 1.22519 0.94974 0.84508 0.92434 1.22377 1.01454 0.94422 0.90311 1.60451 1.27888 1.41911 1.00900 1.22096 1.02005 0.94585 0.87625 1.19320 0.82085 1.02265 0.97793 0.87116 1.29312 0.95264 0.91865 0.91040 1.81026 1.13331 1.10245 1.10802 1.19170 0.97882 0.95723 0.87883 1.21195 1.42427 1.01495 0.91194 0.92418 1.24955 0.94903 0.95124 0.99021 1.69952 1.43455 1.18104 1.21602 0.86534 0.77982 0.81037 0.82535 1.19645 1.21008 1.20826 1.23013 0.94464 1.03102 0.96157 1.22738 0.96885 1.01159 0.96312 1.23527 0.99003 1.00303 0.97485 0.93142 0.94839 0.89869 0.90629 0.94283 0.84192 0.89235 0.94885 0.95789 0.94238 0.92876 0.89120 0.90284 0.89840 0.91437 0.90914 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.63 101.05 1.07 1.41 16 2 O -0.35 -4.33 10.37 -35.23 -0.37 -4.70 16 3 C 0.10 1.03 0.85 -89.81 -0.08 0.96 16 4 C 0.04 0.50 4.67 -3.82 -0.02 0.48 16 5 N -0.68 -9.39 6.33 -113.78 -0.72 -10.11 16 6 C 0.07 1.00 5.12 -3.83 -0.02 0.98 16 7 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 8 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 9 C 0.24 4.98 12.98 -20.76 -0.27 4.71 16 10 N -0.48 -10.55 18.54 42.15 0.78 -9.77 16 11 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 12 C -0.52 -14.10 8.60 -34.44 -0.30 -14.39 16 13 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.13 -1.31 7.33 -25.92 -0.19 -1.50 16 21 C -0.13 -1.15 8.02 -25.92 -0.21 -1.36 16 22 C -0.17 -1.42 7.22 -25.91 -0.19 -1.61 16 23 H 0.05 0.52 6.80 -51.93 -0.35 0.17 16 24 H 0.03 0.28 6.89 -51.93 -0.36 -0.08 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.82 7.22 -51.93 -0.37 0.44 16 27 H 0.04 0.42 8.02 -51.93 -0.42 0.01 16 28 H 0.34 5.00 7.67 -39.29 -0.30 4.70 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 0.85 8.01 -51.93 -0.42 0.44 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.60 6.84 -51.93 -0.36 0.24 16 39 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -29.98 325.82 -6.65 -36.63 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.33 Total: -0.31 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.64 Total: -8.17 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.80 Total: -44.79 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.37 Total: -4.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.98 -6.65 -36.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309428166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.655 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds