Wall clock time and date at job start Mon Mar 30 2020 03:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 114.00080 * 2 1 4 4 C 1.52995 * 112.84892 * 64.89391 * 3 2 1 5 5 N 1.46904 * 109.47426 * 52.31754 * 4 3 2 6 6 C 1.46897 * 111.00347 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47097 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47808 * 305.00027 * 7 6 5 9 9 C 1.47204 * 109.47300 * 64.99996 * 7 6 5 10 10 N 5.95561 * 124.02470 * 81.22544 * 2 1 3 11 11 C 1.53006 * 109.47036 * 184.99826 * 7 6 5 12 12 C 1.50708 * 109.47118 * 175.00202 * 11 7 6 13 13 H 1.07998 * 119.99511 * 0.02562 * 12 11 7 14 14 C 1.37870 * 120.00049 * 180.02562 * 12 11 7 15 15 N 1.31520 * 119.99778 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00032 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47138 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46986 * 120.00338 * 16 14 12 19 19 H 1.48498 * 109.46923 * 239.99863 * 16 14 12 20 20 C 1.53779 * 113.68878 * 196.16289 * 3 2 1 21 21 C 1.53779 * 87.08367 * 89.12720 * 20 3 2 22 22 C 1.53784 * 113.61385 * 293.69878 * 3 2 1 23 23 H 1.09002 * 109.46826 * 304.87077 * 1 2 3 24 24 H 1.09002 * 109.46600 * 64.86394 * 1 2 3 25 25 H 1.08996 * 109.47417 * 184.86374 * 1 2 3 26 26 H 1.09001 * 109.47273 * 292.31921 * 4 3 2 27 27 H 1.09000 * 109.47098 * 172.31372 * 4 3 2 28 28 H 1.00896 * 110.99976 * 56.04409 * 5 4 3 29 29 H 1.09001 * 109.47156 * 59.99785 * 6 5 4 30 30 H 1.09005 * 109.46980 * 299.99873 * 6 5 4 31 31 H 1.09000 * 109.47250 * 294.99807 * 11 7 6 32 32 H 1.08993 * 109.46861 * 55.00104 * 11 7 6 33 33 H 0.96998 * 119.99610 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.61505 * 203.67943 * 20 3 2 35 35 H 1.08999 * 113.61351 * 334.57469 * 20 3 2 36 36 H 1.08998 * 113.61183 * 270.88518 * 21 20 3 37 37 H 1.08994 * 113.69204 * 139.98993 * 21 20 3 38 38 H 1.08999 * 113.61467 * 25.34922 * 22 3 2 39 39 H 1.08997 * 113.61174 * 156.25129 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7055 2.0915 1.2767 5 7 2.0699 1.2834 2.4481 6 6 1.7909 2.0081 3.6951 7 6 2.1819 1.1362 4.8900 8 1 1.6709 0.1759 4.8219 9 6 3.6377 0.9188 4.8833 10 7 4.7615 0.7530 4.8782 11 6 1.7771 1.8384 6.1878 12 6 2.0497 0.9282 7.3576 13 1 2.4700 -0.0527 7.1919 14 6 1.7625 1.3478 8.6391 15 7 1.2501 2.5422 8.8406 16 14 2.0998 0.2193 10.0890 17 1 2.6713 -1.0603 9.5979 18 1 3.0646 0.8718 11.0101 19 1 0.8309 -0.0508 10.8116 20 6 3.4972 1.3197 -0.3920 21 6 3.0306 1.4696 -1.8496 22 6 1.7435 2.0985 -1.2902 23 1 -0.3633 0.5876 0.8432 24 1 -0.3632 0.4365 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 0.6416 2.3259 1.3138 27 1 2.2818 3.0166 1.2801 28 1 3.0368 0.9986 2.4044 29 1 0.7277 2.2424 3.7491 30 1 2.3682 2.9325 3.7150 31 1 2.3541 2.7563 6.2995 32 1 0.7145 2.0790 6.1545 33 1 1.0484 2.8375 9.7423 34 1 4.0397 2.1871 -0.0158 35 1 4.0105 0.3790 -0.1923 36 1 2.8674 0.5182 -2.3558 37 1 3.6363 2.1618 -2.4344 38 1 0.8410 1.7866 -1.8158 39 1 1.8065 3.1788 -1.1596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309428166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:24 Heat of formation + Delta-G solvation = -28.107372 kcal Electronic energy + Delta-G solvation = -18431.453932 eV Core-core repulsion = 15566.787706 eV Total energy + Delta-G solvation = -2864.666226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92857 -38.75031 -36.42561 -36.32561 -35.34442 -33.26990 -29.42226 -27.87708 -27.25563 -26.23838 -24.23568 -23.55880 -22.84167 -20.30127 -18.57341 -18.25619 -17.54010 -16.78713 -16.67601 -16.24519 -16.06138 -15.45254 -15.06842 -14.91434 -14.67567 -14.33588 -14.21087 -13.90656 -13.62678 -13.38920 -13.15936 -13.06827 -12.74104 -12.49907 -12.47693 -12.36396 -12.20665 -11.96590 -11.86501 -11.64746 -11.41103 -11.17139 -10.96989 -10.56002 -10.17754 -9.35159 -8.20239 -6.28323 1.38775 1.41705 1.52408 1.93142 1.95810 2.41139 2.76352 3.14909 3.19858 3.24770 3.64673 3.76731 3.87713 3.93325 4.17262 4.37166 4.46710 4.58027 4.59162 4.64750 4.70242 4.76778 4.79707 4.88382 4.94611 4.97408 5.01246 5.05697 5.12690 5.28971 5.39370 5.46591 5.61818 5.78814 6.00962 6.20988 6.28104 6.51890 6.74454 6.86649 7.40379 8.90900 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.004034 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.863800 B = 6939.961171 C = 7129.807980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.088 3.912 4 C 0.044 3.956 5 N -0.684 5.684 6 C 0.079 3.921 7 C 0.019 3.981 8 H 0.120 0.880 9 C 0.251 3.749 10 N -0.504 5.504 11 C 0.039 3.961 12 C -0.539 4.539 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.155 4.155 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.334 0.666 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.001 0.999 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 0.356 -21.030 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.048 3.952 4 C -0.085 4.085 5 N -0.314 5.314 6 C -0.051 4.051 7 C -0.003 4.003 8 H 0.137 0.863 9 C -0.065 4.065 10 N -0.182 5.182 11 C 0.000 4.000 12 C -0.577 4.577 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.174 4.174 21 C -0.165 4.165 22 C -0.193 4.193 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.188 -0.300 -20.903 21.019 hybrid contribution 0.364 0.421 1.329 1.441 sum -1.824 0.121 -19.574 19.659 Atomic orbital electron populations 1.22772 0.80258 1.03102 1.00394 1.87880 1.20774 1.25757 1.94739 1.22649 0.95278 0.84289 0.92986 1.22475 1.02039 0.94514 0.89512 1.60440 1.27438 1.42371 1.01164 1.21939 1.02752 0.93628 0.86818 1.19223 0.80881 1.02842 0.97313 0.86269 1.29666 0.95587 0.91031 0.90210 1.81023 1.14220 1.11248 1.11695 1.18990 0.97279 0.94540 0.89197 1.21584 1.41813 1.01754 0.92573 0.92924 1.25702 0.94968 0.96418 1.01607 1.70037 1.44536 1.19479 1.22262 0.85640 0.78089 0.79237 0.79591 1.19484 1.21038 1.19741 1.23081 0.94227 1.02538 0.97515 1.22706 0.97050 1.01334 0.95457 1.23498 0.99152 1.00775 0.95833 0.93573 0.93159 0.89463 0.89807 0.93379 0.84915 0.87763 0.94861 0.98045 0.94482 0.92692 0.88503 0.91950 0.90345 0.89940 0.90322 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.63 113.37 1.21 1.77 16 2 O -0.37 -8.82 10.37 -148.98 -1.55 -10.37 16 3 C 0.09 1.75 0.85 -10.27 -0.01 1.74 16 4 C 0.04 0.91 4.67 86.30 0.40 1.31 16 5 N -0.68 -17.90 6.33 -513.89 -3.25 -21.16 16 6 C 0.08 2.25 5.12 86.30 0.44 2.70 16 7 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 8 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 9 C 0.25 10.25 12.98 89.44 1.16 11.41 16 10 N -0.50 -22.21 18.54 20.01 0.37 -21.84 16 11 C 0.04 1.80 4.42 29.85 0.13 1.93 16 12 C -0.54 -28.88 8.60 25.60 0.22 -28.66 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.66 5.46 84.65 0.46 1.12 16 15 N -0.92 -53.11 13.29 21.45 0.28 -52.83 16 16 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C -0.14 -2.60 7.33 31.12 0.23 -2.37 16 21 C -0.13 -1.97 8.02 31.12 0.25 -1.72 16 22 C -0.15 -2.28 7.22 31.12 0.22 -2.05 16 23 H 0.05 0.87 6.80 -2.39 -0.02 0.86 16 24 H 0.05 0.74 6.89 -2.39 -0.02 0.72 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.61 7.22 -2.39 -0.02 1.59 16 27 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 28 H 0.33 9.52 7.67 -89.70 -0.69 8.83 16 29 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.10 1.69 8.01 -2.39 -0.02 1.67 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.08 6.84 -2.39 -0.02 1.06 16 39 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -62.80 325.82 2.91 -59.88 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.34 Total: 12.66 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.69 Total: -12.14 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -2.60 Total: -95.82 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.55 Total: -10.37 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.80 2.91 -59.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309428166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.775 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds