Wall clock time and date at job start Mon Mar 30 2020 03:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99456 * 2 1 4 4 C 1.52997 * 112.85158 * 294.63547 * 3 2 1 5 5 N 1.46901 * 109.47192 * 288.92308 * 4 3 2 6 6 C 1.46905 * 110.99764 * 174.62229 * 5 4 3 7 7 C 1.53001 * 109.46723 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47374 * 54.99801 * 7 6 5 9 9 C 1.47201 * 109.47068 * 294.99615 * 7 6 5 10 10 N 6.34111 * 129.47766 * 294.47745 * 2 1 3 11 11 C 1.53000 * 109.46950 * 174.99884 * 7 6 5 12 12 C 1.50701 * 109.47232 * 185.00155 * 11 7 6 13 13 H 1.08001 * 119.99729 * 359.97438 * 12 11 7 14 14 C 1.37873 * 120.00225 * 180.02562 * 12 11 7 15 15 N 1.31518 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00149 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47361 * 89.99339 * 16 14 12 18 18 H 1.48500 * 109.47009 * 209.99439 * 16 14 12 19 19 H 1.48498 * 109.46951 * 329.99365 * 16 14 12 20 20 C 1.53781 * 113.69139 * 65.90908 * 3 2 1 21 21 C 1.53783 * 87.08115 * 89.12488 * 20 3 2 22 22 C 1.53776 * 87.08211 * 25.43231 * 21 20 3 23 23 H 1.09002 * 109.47348 * 296.19997 * 1 2 3 24 24 H 1.09005 * 109.46456 * 56.19879 * 1 2 3 25 25 H 1.08997 * 109.46798 * 176.19098 * 1 2 3 26 26 H 1.09002 * 109.47187 * 168.92412 * 4 3 2 27 27 H 1.08997 * 109.47503 * 48.92604 * 4 3 2 28 28 H 1.00908 * 110.99873 * 298.57138 * 5 4 3 29 29 H 1.08997 * 109.47166 * 60.00123 * 6 5 4 30 30 H 1.08997 * 109.46811 * 299.99503 * 6 5 4 31 31 H 1.08997 * 109.47407 * 64.99736 * 11 7 6 32 32 H 1.08998 * 109.46947 * 305.00050 * 11 7 6 33 33 H 0.97001 * 120.00142 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.61548 * 203.66956 * 20 3 2 35 35 H 1.08998 * 113.61797 * 334.57322 * 20 3 2 36 36 H 1.08998 * 113.60972 * 270.87972 * 21 20 3 37 37 H 1.08999 * 113.69070 * 139.99504 * 21 20 3 38 38 H 1.09006 * 113.61345 * 220.02136 * 22 21 20 39 39 H 1.08998 * 113.61405 * 89.12116 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7149 2.0873 -1.2816 5 7 2.4736 1.5047 -2.3964 6 6 2.1184 2.1485 -3.6682 7 6 2.9266 1.5161 -4.8030 8 1 2.7700 0.4374 -4.8033 9 6 4.3567 1.8043 -4.6067 10 7 5.4606 2.0280 -4.4546 11 6 2.4681 2.0983 -6.1416 12 6 3.1758 1.3886 -7.2670 13 1 3.8824 0.6013 -7.0492 14 6 2.9222 1.7450 -8.5744 15 7 2.0622 2.7041 -8.8396 16 14 3.7990 0.8649 -9.9694 17 1 2.9970 -0.3101 -10.3950 18 1 3.9623 1.7943 -11.1160 19 1 5.1348 0.4108 -9.5061 20 6 1.7363 2.1038 1.2856 21 6 3.0187 1.4750 1.8555 22 6 3.4946 1.3190 0.4016 23 1 -0.3634 0.4537 0.9221 24 1 -0.3632 0.5718 -0.8540 25 1 -0.3633 -1.0254 -0.0683 26 1 2.0079 3.1286 -1.1476 27 1 0.6485 2.0354 -1.5014 28 1 3.4667 1.5621 -2.2270 29 1 2.3430 3.2136 -3.6114 30 1 1.0543 2.0112 -3.8602 31 1 2.7058 3.1615 -6.1759 32 1 1.3916 1.9632 -6.2469 33 1 1.8835 2.9546 -9.7595 34 1 1.8018 3.1835 1.1514 35 1 0.8299 1.7952 1.8064 36 1 2.8507 0.5258 2.3642 37 1 3.6234 2.1677 2.4409 38 1 4.0076 0.3767 0.2088 39 1 4.0408 2.1841 0.0257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309428167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:26 Heat of formation + Delta-G solvation = -27.931060 kcal Electronic energy + Delta-G solvation = -18407.708964 eV Core-core repulsion = 15543.050383 eV Total energy + Delta-G solvation = -2864.658580 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95781 -38.75460 -36.50894 -36.28449 -35.34328 -33.27470 -29.42756 -27.91337 -27.29966 -26.22935 -24.20423 -23.56746 -22.92371 -20.29468 -18.57979 -18.25795 -17.53981 -16.79015 -16.69473 -16.24921 -16.14011 -15.49413 -15.08538 -14.94402 -14.68654 -14.36556 -14.24597 -13.90771 -13.50321 -13.30392 -13.21193 -13.06132 -12.72090 -12.56961 -12.49387 -12.37067 -12.22935 -11.98150 -11.87843 -11.66618 -11.41520 -11.19052 -10.99803 -10.55243 -10.19610 -9.35211 -8.20091 -6.28334 1.40287 1.41731 1.51182 1.92101 1.94728 2.41222 2.77000 3.11990 3.14905 3.23912 3.66753 3.77101 3.88426 3.94304 4.16240 4.36627 4.46218 4.49869 4.56156 4.58457 4.68707 4.75370 4.78341 4.88495 4.93896 4.96355 4.98738 5.05793 5.12101 5.29784 5.38854 5.46212 5.61531 5.78559 5.99947 6.20806 6.26931 6.49756 6.73745 6.86300 7.40317 8.90862 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036477 B = 0.004056 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.426754 B = 6901.186216 C = 7208.221781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.092 3.908 4 C 0.043 3.957 5 N -0.687 5.687 6 C 0.079 3.921 7 C 0.019 3.981 8 H 0.120 0.880 9 C 0.251 3.749 10 N -0.503 5.503 11 C 0.039 3.961 12 C -0.540 4.540 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.155 4.155 21 C -0.129 4.129 22 C -0.133 4.133 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.335 0.665 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.002 0.998 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -1.461 20.515 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.051 3.949 4 C -0.086 4.086 5 N -0.318 5.318 6 C -0.051 4.051 7 C -0.003 4.003 8 H 0.137 0.863 9 C -0.065 4.065 10 N -0.181 5.181 11 C 0.000 4.000 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.193 4.193 21 C -0.166 4.166 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.152 0.848 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.267 -1.726 20.518 21.028 hybrid contribution 0.359 0.637 -1.246 1.445 sum -3.908 -1.089 19.272 19.694 Atomic orbital electron populations 1.22856 0.80297 1.03341 1.00592 1.87910 1.20750 1.25957 1.94762 1.22597 0.95379 0.84105 0.92777 1.22458 0.99677 0.96029 0.90484 1.60422 1.10705 1.58943 1.01680 1.21933 1.00659 0.95379 0.87140 1.19222 0.80394 1.03586 0.97094 0.86276 1.29672 0.95462 0.91173 0.90202 1.81049 1.13596 1.11344 1.12089 1.18983 0.97159 0.95083 0.88760 1.21554 1.24647 1.19451 0.92198 0.92911 1.25703 0.95871 0.95759 1.01341 1.70030 1.35525 1.30459 1.20299 0.85684 0.79008 0.78806 0.79023 1.19173 1.20892 1.20135 1.23524 0.99250 1.00638 0.95918 1.22726 0.97008 1.01367 0.95523 1.22983 0.94338 1.02447 0.97303 0.92899 0.93608 0.89070 0.93265 0.89836 0.84783 0.94740 0.87869 0.97998 0.94540 0.92677 0.88142 0.90155 0.90172 0.90066 0.91755 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.63 113.37 1.21 1.64 16 2 O -0.37 -8.77 10.56 -148.98 -1.57 -10.34 16 3 C 0.09 1.84 0.90 -10.27 -0.01 1.83 16 4 C 0.04 0.90 5.17 86.30 0.45 1.35 16 5 N -0.69 -18.09 6.44 -513.88 -3.31 -21.41 16 6 C 0.08 2.28 5.11 86.30 0.44 2.72 16 7 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 8 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 9 C 0.25 10.19 12.98 89.44 1.16 11.35 16 10 N -0.50 -21.99 18.54 20.01 0.37 -21.62 16 11 C 0.04 1.81 4.42 29.85 0.13 1.95 16 12 C -0.54 -28.97 8.60 25.60 0.22 -28.75 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.67 5.46 84.65 0.46 1.14 16 15 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 16 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 C -0.16 -2.33 7.20 31.12 0.22 -2.11 16 21 C -0.13 -2.04 8.02 31.12 0.25 -1.79 16 22 C -0.13 -2.64 6.67 31.12 0.21 -2.43 16 23 H 0.05 0.72 6.84 -2.39 -0.02 0.70 16 24 H 0.05 0.79 6.48 -2.38 -0.02 0.77 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 0.95 7.95 -2.39 -0.02 0.93 16 27 H 0.08 1.66 6.47 -2.39 -0.02 1.65 16 28 H 0.33 9.30 7.11 -89.69 -0.64 8.66 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.10 1.27 7.96 -2.39 -0.02 1.26 16 35 H 0.08 1.09 6.81 -2.39 -0.02 1.07 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -62.96 324.17 2.90 -60.06 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.39 Total: 12.85 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.71 Total: -12.44 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -2.66 Total: -95.91 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.57 Total: -10.34 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.96 2.90 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309428167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.132 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds