Wall clock time and date at job start Mon Mar 30 2020 03:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46902 * 109.47027 * 179.72353 * 14 12 2 16 16 C 1.46901 * 110.99844 * 179.97438 * 15 14 12 17 17 C 1.53000 * 115.54776 * 179.90968 * 16 15 14 18 18 C 1.53000 * 117.49636 * 34.33316 * 17 16 15 19 19 C 1.52995 * 117.49913 * 325.67250 * 17 16 15 20 20 C 1.53007 * 117.49845 * 34.20621 * 16 15 14 21 21 C 1.52995 * 117.49795 * 325.58241 * 16 15 14 22 22 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 23 23 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 24 24 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 25 25 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 26 26 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 27 27 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 29 29 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 30 30 H 1.00902 * 110.99470 * 303.94971 * 15 14 12 31 31 H 1.09001 * 115.54560 * 180.02562 * 17 16 15 32 32 H 1.08992 * 117.50334 * 359.97438 * 18 17 16 33 33 H 1.09002 * 117.49493 * 145.02263 * 18 17 16 34 34 H 1.08999 * 117.49821 * 214.97612 * 19 17 16 35 35 H 1.09002 * 117.50124 * 359.97438 * 19 17 16 36 36 H 1.08993 * 117.49412 * 359.97438 * 20 16 15 37 37 H 1.08991 * 117.49682 * 145.02088 * 20 16 15 38 38 H 1.09008 * 117.49973 * 214.97727 * 21 16 15 39 39 H 1.09002 * 117.50251 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3402 -3.5888 -0.0102 16 6 1.6400 -4.8802 -0.0153 17 6 2.5389 -6.1182 -0.0228 18 6 3.8621 -6.0351 0.7408 19 6 3.8596 -6.0276 -0.7899 20 6 0.3163 -4.9630 -0.7783 21 6 0.3193 -4.9707 0.7517 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5138 25 1 1.6083 2.0285 0.5137 26 1 3.1499 1.1385 0.5139 27 1 4.0317 4.4431 -0.8505 28 1 0.7588 -2.5340 0.8844 29 1 0.7590 -2.5261 -0.8955 30 1 2.9751 -3.5182 -0.7913 31 1 2.0193 -7.0764 -0.0271 32 1 4.0924 -5.0984 1.2482 33 1 4.2132 -6.9388 1.2390 34 1 4.2091 -6.9264 -1.2980 35 1 4.0879 -5.0862 -1.2896 36 1 -0.0350 -4.0592 -1.2760 37 1 0.0858 -5.8996 -1.2858 38 1 0.0905 -5.9124 1.2508 39 1 -0.0299 -4.0721 1.2606 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309430943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:32 Heat of formation + Delta-G solvation = 27.316268 kcal Electronic energy + Delta-G solvation = -18754.399681 eV Core-core repulsion = 15892.136805 eV Total energy + Delta-G solvation = -2862.262876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76671 -38.48136 -35.70327 -34.79086 -32.73914 -32.28628 -28.31486 -26.57943 -25.46929 -23.49709 -22.81480 -22.20294 -22.07161 -19.10823 -18.59329 -16.80086 -16.57104 -16.24314 -15.43903 -15.20122 -14.94463 -14.32385 -14.12452 -13.80615 -13.24916 -12.95412 -12.41050 -12.20262 -12.03112 -11.91765 -11.79864 -11.57478 -11.41702 -11.19979 -11.14109 -10.88040 -10.84752 -10.58638 -10.17567 -10.16063 -9.78261 -9.60590 -8.88288 -8.43876 -8.11638 -7.62977 -6.04305 -4.09185 3.29335 3.36372 3.39300 3.42690 3.45479 3.68500 4.11937 4.30213 4.39979 4.46576 4.67820 4.83885 4.99579 5.10892 5.19363 5.22559 5.30025 5.34840 5.43586 5.56781 5.62579 5.68669 5.72103 5.84347 5.92283 5.99007 6.01693 6.09166 6.19085 6.30139 6.88836 7.12493 7.39186 7.46253 7.55122 7.92279 8.23560 8.42573 8.90656 9.11403 9.56013 11.03808 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.004821 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.140863 B = 5806.687595 C = 6177.591876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.503 3.497 13 O -0.529 6.529 14 C 0.035 3.965 15 N -0.630 5.630 16 C 0.089 3.911 17 C -0.115 4.115 18 C -0.163 4.163 19 C -0.178 4.178 20 C -0.222 4.222 21 C -0.170 4.170 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.355 0.645 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 -17.593 1.443 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.289 3.711 13 O -0.405 6.405 14 C -0.097 4.097 15 N -0.262 5.262 16 C -0.004 4.004 17 C -0.134 4.134 18 C -0.200 4.200 19 C -0.216 4.216 20 C -0.262 4.262 21 C -0.207 4.207 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.177 0.823 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.766 -17.359 2.165 18.756 hybrid contribution -0.398 0.431 -1.892 1.980 sum -7.164 -16.927 0.274 18.383 Atomic orbital electron populations 1.21635 0.81584 1.02465 1.00414 1.48139 1.06077 1.07775 1.71717 1.19289 0.92603 0.77999 0.97480 1.21462 1.36437 1.06264 0.92295 0.92526 1.24942 0.95357 0.96402 0.97424 1.69943 1.38387 1.14343 1.30658 0.86443 0.78106 0.78284 0.84575 1.19877 1.20952 1.20839 1.20149 0.88208 0.84802 0.77958 1.90675 1.13656 1.86925 1.49241 1.22033 0.95122 0.90308 1.02219 1.59869 1.17668 0.98298 1.50358 1.20939 0.86392 0.89824 1.03251 1.21527 0.89128 0.95807 1.06940 1.22956 0.99121 1.03772 0.94160 1.22943 1.00250 1.03168 0.95189 1.23620 1.04370 1.03427 0.94772 1.23176 0.99973 1.03434 0.94134 0.93700 0.90698 0.92735 0.95008 0.93777 0.92755 0.88475 0.92393 0.82275 0.87426 0.87253 0.89293 0.89023 0.88541 0.88586 0.88747 0.88471 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.25 59.85 0.61 1.93 16 2 N -0.60 -12.93 2.86 -182.95 -0.52 -13.45 16 3 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 4 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.50 10.60 7.71 -10.98 -0.08 10.51 16 13 O -0.53 -13.50 15.78 5.55 0.09 -13.41 16 14 C 0.04 0.54 3.83 -4.97 -0.02 0.52 16 15 N -0.63 -9.37 5.64 -101.21 -0.57 -9.94 16 16 C 0.09 1.05 2.97 -131.60 -0.39 0.65 16 17 C -0.12 -1.22 5.85 -90.62 -0.53 -1.75 16 18 C -0.16 -1.79 10.02 -26.69 -0.27 -2.06 16 19 C -0.18 -1.90 9.99 -26.69 -0.27 -2.16 16 20 C -0.22 -2.30 9.57 -26.72 -0.26 -2.55 16 21 C -0.17 -1.75 9.57 -26.73 -0.26 -2.00 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 24 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 25 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.10 1.32 6.17 -51.93 -0.32 1.00 16 29 H 0.06 0.80 5.46 -51.93 -0.28 0.52 16 30 H 0.36 5.64 6.99 -39.29 -0.27 5.37 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.11 1.44 7.87 -51.93 -0.41 1.03 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.15 6.81 -51.93 -0.35 0.79 16 36 H 0.10 1.03 6.21 -51.93 -0.32 0.70 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.10 1.02 6.21 -51.93 -0.32 0.70 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -32.64 318.88 -8.31 -40.95 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.92 Total: 4.27 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.90 Total: -4.13 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.36 Total: -49.45 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.64 -8.31 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309430943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.269 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds