Wall clock time and date at job start Mon Mar 30 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00201 * 2 1 4 4 H 1.48497 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47103 * 300.00191 * 3 2 1 6 6 H 1.48499 * 109.46604 * 59.99981 * 3 2 1 7 7 C 1.37885 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46991 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47173 * 179.97438 * 11 10 9 13 13 C 1.46913 * 110.94368 * 293.63185 * 12 11 10 14 14 C 1.53018 * 109.45848 * 177.03686 * 13 12 11 15 15 N 1.47006 * 109.48777 * 58.14061 * 14 13 12 16 16 C 1.46881 * 110.74318 * 300.83086 * 15 14 13 17 17 H 1.09000 * 109.43785 * 299.67240 * 16 15 14 18 18 C 1.52951 * 109.85207 * 179.51025 * 16 15 14 19 19 C 1.53045 * 109.34677 * 179.79704 * 18 16 15 20 20 C 1.52967 * 109.58627 * 59.88129 * 19 18 16 21 21 C 1.53052 * 109.57377 * 300.25682 * 20 19 18 22 22 C 1.46887 * 111.00156 * 169.99693 * 12 11 10 23 23 H 1.09002 * 109.45898 * 63.44154 * 22 12 11 24 24 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47250 * 59.99525 * 9 7 2 26 26 H 1.09004 * 109.46898 * 299.99706 * 9 7 2 27 27 H 1.08993 * 109.47720 * 59.99629 * 10 9 7 28 28 H 1.09004 * 109.46967 * 299.99480 * 10 9 7 29 29 H 1.09003 * 109.47263 * 59.99301 * 11 10 9 30 30 H 1.09004 * 109.46845 * 299.99561 * 11 10 9 31 31 H 1.09006 * 109.48276 * 57.03751 * 13 12 11 32 32 H 1.08998 * 109.48297 * 297.03285 * 13 12 11 33 33 H 1.09004 * 109.47081 * 298.13544 * 14 13 12 34 34 H 1.09003 * 109.46717 * 178.14505 * 14 13 12 35 35 H 1.00892 * 111.00123 * 177.05769 * 15 14 13 36 36 H 1.09000 * 109.48952 * 59.83549 * 18 16 15 37 37 H 1.08995 * 109.50942 * 299.76719 * 18 16 15 38 38 H 1.09007 * 109.44908 * 299.84236 * 19 18 16 39 39 H 1.09002 * 109.43070 * 179.90743 * 19 18 16 40 40 H 1.09003 * 109.45476 * 180.22941 * 20 19 18 41 41 H 1.09001 * 109.44168 * 60.27911 * 20 19 18 42 42 H 1.08999 * 109.49116 * 299.92850 * 21 20 19 43 43 H 1.08998 * 109.49246 * 179.84660 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1036 0.0031 13 6 3.1941 -6.1460 -1.2539 14 6 4.2270 -7.2731 -1.1876 15 7 3.5433 -8.5511 -0.9424 16 6 2.7881 -8.5039 0.3165 17 1 3.4723 -8.3118 1.1430 18 6 2.0758 -9.8380 0.5453 19 6 1.2972 -9.7779 1.8615 20 6 0.2652 -8.6507 1.7957 21 6 0.9774 -7.3166 1.5600 22 6 1.7504 -7.3812 0.2419 23 1 1.0578 -7.5806 -0.5759 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8712 -3.6040 0.8921 28 1 2.8725 -3.6048 -0.8878 29 1 0.8538 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.7040 -5.1942 -1.4029 32 1 2.5121 -6.3267 -2.0847 33 1 4.9291 -7.0753 -0.3776 34 1 4.7681 -7.3259 -2.1324 35 1 4.1991 -9.3178 -0.9421 36 1 2.8126 -10.6398 0.5948 37 1 1.3860 -10.0280 -0.2770 38 1 1.9880 -9.5902 2.6836 39 1 0.7877 -10.7275 2.0251 40 1 -0.2852 -8.6071 2.7356 41 1 -0.4287 -8.8414 0.9771 42 1 1.6704 -7.1245 2.3791 43 1 0.2407 -6.5148 1.5106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309467377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:07 Heat of formation + Delta-G solvation = -20.162865 kcal Electronic energy + Delta-G solvation = -19354.043167 eV Core-core repulsion = 16625.554536 eV Total energy + Delta-G solvation = -2728.488632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00167 -36.37237 -35.19373 -33.38849 -31.30066 -30.20287 -29.68948 -27.12941 -25.03245 -23.29851 -22.86828 -21.40559 -20.21900 -19.67234 -19.60787 -16.49622 -16.15639 -15.59859 -15.05060 -14.78718 -14.53356 -14.41760 -14.17276 -13.90091 -13.22344 -13.13693 -12.82716 -12.35666 -12.11599 -11.97647 -11.59617 -11.36960 -11.21217 -11.16892 -11.09068 -10.79532 -10.62359 -10.56887 -10.47717 -10.16889 -9.96932 -9.51630 -9.27444 -9.00431 -8.53934 -8.31416 -7.98540 -5.96596 -3.98354 3.33189 3.40470 3.45071 4.02169 4.09086 4.49580 4.60799 4.80490 4.87523 5.15063 5.16719 5.20056 5.35902 5.38549 5.39590 5.42259 5.45678 5.47825 5.68875 5.77148 5.79178 5.91827 5.98555 6.01194 6.04944 6.07452 6.12610 6.16141 6.23043 6.39682 6.44861 6.75191 6.83421 6.93133 7.17494 7.25607 7.45106 7.50174 7.72710 7.87946 8.04310 8.47947 9.09111 9.65496 11.14946 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034111 B = 0.004316 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.646727 B = 6486.599628 C = 7094.923373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.537 5.537 13 C 0.054 3.946 14 C 0.061 3.939 15 N -0.689 5.689 16 C 0.095 3.905 17 H 0.045 0.955 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.117 4.117 22 C 0.094 3.906 23 H 0.043 0.957 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.338 0.662 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -20.348 1.188 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.261 5.261 13 C -0.074 4.074 14 C -0.069 4.069 15 N -0.320 5.320 16 C -0.015 4.015 17 H 0.063 0.937 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.015 4.015 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.044 -19.981 1.167 20.420 hybrid contribution 0.576 0.843 -0.083 1.025 sum 4.620 -19.138 1.084 19.718 Atomic orbital electron populations 1.69976 1.06054 1.26394 1.51201 1.25028 0.94830 0.99225 0.95432 0.86554 0.80157 0.83879 0.77535 1.19738 1.21067 1.21031 1.21295 0.93063 0.91048 1.50092 0.92667 1.19076 0.94052 0.91431 0.97050 1.21640 0.99112 0.92768 1.00622 1.22372 0.93900 0.90827 1.00377 1.62231 1.27152 1.02832 1.33889 1.22165 0.96012 0.98500 0.90748 1.21995 0.95378 0.89024 1.00482 1.60549 1.30604 1.05302 1.35588 1.21511 0.94900 0.94701 0.90376 0.93737 1.21542 0.99339 0.96030 0.98003 1.21519 0.98042 0.98598 0.97362 1.21537 0.97774 0.94574 1.01734 1.21681 0.99351 0.97288 0.97220 1.21569 0.93960 0.89015 0.96960 0.93897 0.93128 0.96849 0.96650 0.92735 0.93573 0.95459 0.90718 0.89566 0.94496 0.94408 0.90577 0.84481 0.92156 0.91245 0.91983 0.91928 0.91738 0.92024 0.91142 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.21 5.09 -26.73 -0.14 -2.35 16 11 C 0.05 0.95 4.72 -3.83 -0.02 0.93 16 12 N -0.54 -8.54 4.54 -226.64 -1.03 -9.57 16 13 C 0.05 0.80 5.40 -3.81 -0.02 0.78 16 14 C 0.06 0.74 6.71 -3.76 -0.03 0.71 16 15 N -0.69 -7.89 6.57 -106.64 -0.70 -8.60 16 16 C 0.10 1.12 2.43 -67.72 -0.16 0.96 16 17 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 18 C -0.11 -1.06 5.50 -26.73 -0.15 -1.21 16 19 C -0.12 -1.05 5.92 -26.72 -0.16 -1.20 16 20 C -0.12 -1.19 5.92 -26.72 -0.16 -1.35 16 21 C -0.12 -1.48 4.93 -26.74 -0.13 -1.61 16 22 C 0.09 1.29 1.80 -67.72 -0.12 1.17 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.97 6.50 -51.93 -0.34 0.63 16 29 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.07 1.35 5.75 -51.93 -0.30 1.05 16 31 H 0.09 1.33 6.35 -51.93 -0.33 1.00 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.34 3.14 8.83 -39.30 -0.35 2.79 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.98 6.17 -51.93 -0.32 0.66 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -30.38 323.10 -10.71 -41.09 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.94 Total: -1.67 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.63 Total: -16.46 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.99 Total: -44.79 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.38 -10.71 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309467377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds