Wall clock time and date at job start Mon Mar 30 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00201 * 2 1 4 4 H 1.48497 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47103 * 300.00191 * 3 2 1 6 6 H 1.48499 * 109.46604 * 59.99981 * 3 2 1 7 7 C 1.37885 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46991 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47173 * 179.97438 * 11 10 9 13 13 C 1.46913 * 110.94368 * 293.63185 * 12 11 10 14 14 C 1.53018 * 109.45848 * 177.03686 * 13 12 11 15 15 N 1.47006 * 109.48777 * 58.14061 * 14 13 12 16 16 C 1.46881 * 110.74318 * 300.83086 * 15 14 13 17 17 H 1.09000 * 109.43785 * 299.67240 * 16 15 14 18 18 C 1.52951 * 109.85207 * 179.51025 * 16 15 14 19 19 C 1.53045 * 109.34677 * 179.79704 * 18 16 15 20 20 C 1.52967 * 109.58627 * 59.88129 * 19 18 16 21 21 C 1.53052 * 109.57377 * 300.25682 * 20 19 18 22 22 C 1.46887 * 111.00156 * 169.99693 * 12 11 10 23 23 H 1.09002 * 109.45898 * 63.44154 * 22 12 11 24 24 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47250 * 59.99525 * 9 7 2 26 26 H 1.09004 * 109.46898 * 299.99706 * 9 7 2 27 27 H 1.08993 * 109.47720 * 59.99629 * 10 9 7 28 28 H 1.09004 * 109.46967 * 299.99480 * 10 9 7 29 29 H 1.09003 * 109.47263 * 59.99301 * 11 10 9 30 30 H 1.09004 * 109.46845 * 299.99561 * 11 10 9 31 31 H 1.09006 * 109.48276 * 57.03751 * 13 12 11 32 32 H 1.08998 * 109.48297 * 297.03285 * 13 12 11 33 33 H 1.09004 * 109.47081 * 298.13544 * 14 13 12 34 34 H 1.09003 * 109.46717 * 178.14505 * 14 13 12 35 35 H 1.00892 * 111.00123 * 177.05769 * 15 14 13 36 36 H 1.09000 * 109.48952 * 59.83549 * 18 16 15 37 37 H 1.08995 * 109.50942 * 299.76719 * 18 16 15 38 38 H 1.09007 * 109.44908 * 299.84236 * 19 18 16 39 39 H 1.09002 * 109.43070 * 179.90743 * 19 18 16 40 40 H 1.09003 * 109.45476 * 180.22941 * 20 19 18 41 41 H 1.09001 * 109.44168 * 60.27911 * 20 19 18 42 42 H 1.08999 * 109.49116 * 299.92850 * 21 20 19 43 43 H 1.08998 * 109.49246 * 179.84660 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1036 0.0031 13 6 3.1941 -6.1460 -1.2539 14 6 4.2270 -7.2731 -1.1876 15 7 3.5433 -8.5511 -0.9424 16 6 2.7881 -8.5039 0.3165 17 1 3.4723 -8.3118 1.1430 18 6 2.0758 -9.8380 0.5453 19 6 1.2972 -9.7779 1.8615 20 6 0.2652 -8.6507 1.7957 21 6 0.9774 -7.3166 1.5600 22 6 1.7504 -7.3812 0.2419 23 1 1.0578 -7.5806 -0.5759 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8712 -3.6040 0.8921 28 1 2.8725 -3.6048 -0.8878 29 1 0.8538 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.7040 -5.1942 -1.4029 32 1 2.5121 -6.3267 -2.0847 33 1 4.9291 -7.0753 -0.3776 34 1 4.7681 -7.3259 -2.1324 35 1 4.1991 -9.3178 -0.9421 36 1 2.8126 -10.6398 0.5948 37 1 1.3860 -10.0280 -0.2770 38 1 1.9880 -9.5902 2.6836 39 1 0.7877 -10.7275 2.0251 40 1 -0.2852 -8.6071 2.7356 41 1 -0.4287 -8.8414 0.9771 42 1 1.6704 -7.1245 2.3791 43 1 0.2407 -6.5148 1.5106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309467377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:07 Heat of formation + Delta-G solvation = -40.308828 kcal Electronic energy + Delta-G solvation = -19354.916762 eV Core-core repulsion = 16625.554536 eV Total energy + Delta-G solvation = -2729.362226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07206 -37.55161 -36.37247 -35.29991 -33.14098 -31.17799 -30.72377 -28.82300 -26.52983 -24.64425 -24.02631 -22.78673 -21.58763 -20.89314 -20.69028 -18.48707 -17.44698 -16.69549 -16.53991 -16.08393 -16.02491 -15.56296 -15.30175 -15.25026 -14.38572 -14.28915 -14.14162 -13.97117 -13.50449 -13.27549 -13.05423 -12.87814 -12.65763 -12.49275 -12.21286 -12.19341 -12.12743 -12.08619 -11.50039 -11.46889 -11.40579 -11.24627 -10.99795 -10.82607 -10.56561 -9.51543 -9.27604 -8.21061 -6.32289 1.39335 1.39708 1.53452 2.40181 2.85304 3.12005 3.14166 3.66487 3.88171 3.92262 4.14744 4.17408 4.23572 4.28660 4.31778 4.37730 4.44285 4.47427 4.54425 4.62151 4.67673 4.83335 4.87097 4.90947 4.94126 4.98241 5.07804 5.13275 5.20212 5.22055 5.26974 5.29456 5.33201 5.50057 5.52459 5.71491 5.83884 5.94102 6.03888 6.21814 6.26449 6.51687 6.84252 7.37023 8.91240 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034111 B = 0.004316 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.646727 B = 6486.599628 C = 7094.923373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.086 4.086 11 C 0.065 3.935 12 N -0.540 5.540 13 C 0.050 3.950 14 C 0.068 3.932 15 N -0.692 5.692 16 C 0.099 3.901 17 H 0.038 0.962 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.116 4.116 22 C 0.093 3.907 23 H 0.028 0.972 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.008 1.008 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.354 0.646 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -21.595 1.451 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.124 4.124 11 C -0.063 4.063 12 N -0.265 5.265 13 C -0.078 4.078 14 C -0.062 4.062 15 N -0.324 5.324 16 C -0.011 4.011 17 H 0.056 0.944 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.016 4.016 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.458 -21.260 1.429 21.996 hybrid contribution 0.103 1.221 -0.180 1.239 sum 5.561 -20.038 1.248 20.833 Atomic orbital electron populations 1.70105 1.07834 1.27735 1.51750 1.25996 0.95780 1.03399 0.94648 0.85378 0.79049 0.78633 0.77865 1.18612 1.20268 1.20221 1.21699 0.93484 0.92324 1.50476 0.92311 1.18963 0.94365 0.93135 0.94638 1.21370 0.97926 0.92631 1.00492 1.22085 0.93781 0.90545 0.99872 1.62229 1.26589 1.03122 1.34536 1.22229 0.96313 0.99422 0.89849 1.21924 0.94333 0.88368 1.01567 1.60515 1.31094 1.05477 1.35348 1.21488 0.94307 0.95022 0.90290 0.94391 1.21517 0.99565 0.95049 0.98153 1.21515 0.97709 0.98860 0.97055 1.21527 0.98018 0.93477 1.02253 1.21667 0.98867 0.98504 0.96402 1.21680 0.94472 0.88560 0.96897 0.95410 0.92741 0.99348 0.98979 0.93023 0.93300 0.96554 0.90795 0.90565 0.95528 0.94537 0.88532 0.82598 0.90105 0.91728 0.91683 0.89894 0.90654 0.92106 0.91638 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.47 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.80 5.09 30.59 0.16 -3.65 16 11 C 0.06 2.45 4.72 86.30 0.41 2.85 16 12 N -0.54 -17.35 4.54 -870.94 -3.95 -21.30 16 13 C 0.05 1.48 5.40 86.31 0.47 1.95 16 14 C 0.07 1.54 6.71 86.29 0.58 2.12 16 15 N -0.69 -14.43 6.57 -491.30 -3.23 -17.65 16 16 C 0.10 2.17 2.43 44.92 0.11 2.28 16 17 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 18 C -0.10 -1.73 5.50 30.59 0.17 -1.56 16 19 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 20 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 21 C -0.12 -2.91 4.93 30.59 0.15 -2.76 16 22 C 0.09 2.53 1.80 44.92 0.08 2.61 16 23 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.11 6.50 -2.38 -0.02 2.09 16 29 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.07 2.79 5.75 -2.38 -0.01 2.78 16 31 H 0.08 2.37 6.35 -2.38 -0.02 2.36 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.35 5.56 8.83 -89.70 -0.79 4.77 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.53 6.17 -2.39 -0.01 1.52 16 Total: -1.00 -65.79 323.10 -1.38 -67.17 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.17 Total: 11.66 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 3.32 Total: -29.29 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -6.89 Total: -96.69 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.79 -1.38 -67.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309467377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.857 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds