Wall clock time and date at job start Mon Mar 30 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.46966 * 110.99738 * 293.64283 * 12 11 10 14 14 C 1.53041 * 109.41902 * 176.81876 * 13 12 11 15 15 N 1.46970 * 109.42504 * 58.24048 * 14 13 12 16 16 C 1.46922 * 110.81952 * 300.85829 * 15 14 13 17 17 H 1.09007 * 109.30366 * 299.72258 * 16 15 14 18 18 C 1.52893 * 109.64554 * 179.77215 * 16 15 14 19 19 C 1.53003 * 109.55536 * 299.67321 * 18 16 15 20 20 C 1.53016 * 109.39555 * 300.03411 * 19 18 16 21 21 C 1.52966 * 109.44476 * 60.14511 * 20 19 18 22 22 C 1.47055 * 111.00122 * 169.99763 * 12 11 10 23 23 H 1.09001 * 109.56732 * 303.40350 * 22 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.08997 * 109.48024 * 296.79812 * 13 12 11 32 32 H 1.09003 * 109.48091 * 56.83657 * 13 12 11 33 33 H 1.09008 * 109.47891 * 298.24794 * 14 13 12 34 34 H 1.09005 * 109.48297 * 178.22715 * 14 13 12 35 35 H 1.00897 * 111.00219 * 64.67341 * 15 14 13 36 36 H 1.09002 * 109.46116 * 59.69246 * 18 16 15 37 37 H 1.08999 * 109.46205 * 179.64914 * 18 16 15 38 38 H 1.08998 * 109.48449 * 60.00963 * 19 18 16 39 39 H 1.09007 * 109.48432 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47543 * 180.14213 * 20 19 18 41 41 H 1.09002 * 109.47822 * 300.15171 * 20 19 18 42 42 H 1.08999 * 109.45662 * 179.84837 * 21 20 19 43 43 H 1.09003 * 109.45567 * 59.89464 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4346 -6.1037 -0.0213 13 6 3.1961 -6.1407 -1.2778 14 6 4.2319 -7.2654 -1.2120 15 7 3.5496 -8.5450 -0.9731 16 6 2.7889 -8.5045 0.2832 17 1 3.4711 -8.3131 1.1116 18 6 2.0864 -9.8448 0.5021 19 6 1.1242 -10.1140 -0.6566 20 6 0.0818 -8.9958 -0.7218 21 6 0.7854 -7.6562 -0.9462 22 6 1.7492 -7.3839 0.2108 23 1 1.1968 -7.3373 1.1493 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 0.8531 -5.0490 0.8724 30 1 0.8537 -5.0406 -0.9075 31 1 2.5157 -6.3215 -2.1099 32 1 3.7036 -5.1871 -1.4235 33 1 4.9309 -7.0687 -0.3990 34 1 4.7760 -7.3142 -2.1553 35 1 2.9525 -8.7869 -1.7496 36 1 2.8295 -10.6408 0.5493 37 1 1.5282 -9.8136 1.4378 38 1 1.6821 -10.1459 -1.5925 39 1 0.6238 -11.0695 -0.4991 40 1 -0.6060 -9.1876 -1.5454 41 1 -0.4739 -8.9619 0.2153 42 1 0.0428 -6.8598 -0.9954 43 1 1.3426 -7.6911 -1.8824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309467380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:10 Heat of formation + Delta-G solvation = -37.228492 kcal Electronic energy + Delta-G solvation = -19531.199094 eV Core-core repulsion = 16801.970441 eV Total energy + Delta-G solvation = -2729.228653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61668 -37.54826 -35.89581 -35.12278 -33.15990 -31.38613 -30.52878 -28.67656 -26.58233 -24.57556 -24.02105 -23.44998 -22.18491 -21.13110 -19.54162 -18.50644 -17.23029 -16.77599 -16.65357 -16.42041 -16.12032 -15.63459 -15.26516 -14.48503 -14.41991 -14.31925 -14.10024 -13.94126 -13.43747 -13.31366 -13.13358 -12.92665 -12.67253 -12.55741 -12.48328 -12.36723 -12.13173 -11.96224 -11.60478 -11.38588 -11.33539 -11.22959 -11.14477 -11.06996 -10.57395 -9.48282 -9.10165 -8.22426 -6.33999 1.38295 1.41748 1.49764 2.39074 2.84083 3.10494 3.28434 3.74441 3.76459 3.96023 4.05817 4.10536 4.19224 4.21257 4.29264 4.35883 4.45262 4.51737 4.55971 4.60667 4.67664 4.72875 4.83759 4.85180 4.94313 5.02399 5.04277 5.14080 5.15286 5.18308 5.22607 5.33408 5.36217 5.47649 5.49351 5.69227 5.81769 6.00615 6.02637 6.19072 6.24461 6.47841 6.82103 7.35350 8.89398 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.004194 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.668227 B = 6675.391094 C = 7081.473245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.087 4.087 11 C 0.071 3.929 12 N -0.535 5.535 13 C 0.011 3.989 14 C 0.067 3.933 15 N -0.676 5.676 16 C 0.100 3.900 17 H 0.075 0.925 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.150 4.150 22 C 0.051 3.949 23 H 0.077 0.923 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.012 1.012 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.341 0.659 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -21.423 -2.183 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.057 4.057 12 N -0.258 5.258 13 C -0.118 4.118 14 C -0.063 4.063 15 N -0.306 5.306 16 C -0.010 4.010 17 H 0.094 0.906 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.189 4.189 22 C -0.059 4.059 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.975 -21.550 -1.513 22.169 hybrid contribution -1.426 1.950 -0.875 2.569 sum 3.550 -19.600 -2.387 20.062 Atomic orbital electron populations 1.70095 1.07844 1.27890 1.51563 1.26000 0.95789 1.03420 0.94578 0.85483 0.78287 0.77939 0.79244 1.19112 1.20653 1.19132 1.21645 0.93481 0.92359 1.50784 0.92320 1.18950 0.94343 0.93172 0.94542 1.21375 0.97921 0.92752 1.00456 1.21972 0.93621 0.90603 0.99509 1.62412 1.26015 1.02778 1.34636 1.22935 0.97119 1.01605 0.90179 1.22057 0.95358 0.85960 1.02940 1.60926 1.34019 1.30439 1.05223 1.21533 0.92842 0.93539 0.93125 0.90639 1.21515 0.98385 0.95418 0.99067 1.21530 0.96534 0.98391 0.98878 1.21475 0.98014 0.93330 1.02212 1.22152 0.98840 0.98758 0.99186 1.22544 0.95078 0.89856 0.98419 0.90461 0.92715 0.99144 0.99363 0.93287 0.93152 0.91987 0.95942 0.95006 0.91080 0.90793 0.88672 0.83882 0.90187 0.90867 0.91635 0.90215 0.91408 0.91769 0.93617 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.09 -3.80 5.09 30.59 0.16 -3.65 16 11 C 0.07 2.59 4.35 86.30 0.38 2.97 16 12 N -0.54 -16.19 4.67 -870.22 -4.06 -20.25 16 13 C 0.01 0.30 5.01 86.30 0.43 0.74 16 14 C 0.07 1.46 6.72 86.30 0.58 2.04 16 15 N -0.68 -13.46 6.47 -491.38 -3.18 -16.63 16 16 C 0.10 2.07 2.87 44.89 0.13 2.20 16 17 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 18 C -0.11 -1.64 5.63 30.56 0.17 -1.47 16 19 C -0.12 -1.62 5.67 30.60 0.17 -1.45 16 20 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 21 C -0.15 -3.40 4.24 30.59 0.13 -3.27 16 22 C 0.05 1.26 2.28 44.91 0.10 1.36 16 23 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 24 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 25 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.05 2.09 6.50 -2.38 -0.02 2.08 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.32 8.03 -2.39 -0.02 2.30 16 30 H 0.02 0.84 6.91 -2.39 -0.02 0.83 16 31 H 0.03 0.87 6.28 -2.39 -0.01 0.85 16 32 H 0.07 2.14 6.35 -2.39 -0.02 2.12 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.34 6.28 5.32 -89.70 -0.48 5.81 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.91 6.59 -2.39 -0.02 0.90 16 39 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.23 6.73 -2.39 -0.02 1.21 16 43 H 0.06 1.37 5.01 -2.39 -0.01 1.36 16 Total: -1.00 -64.12 314.01 -1.16 -65.27 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.49 Total: 14.16 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.28 Total: -31.94 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -6.95 Total: -94.54 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.12 -1.16 -65.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309467380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.046 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds