Wall clock time and date at job start Mon Mar 30 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46894 * 110.99872 * 2 1 4 4 C 1.46892 * 110.99775 * 123.95261 * 2 1 3 5 5 H 1.09000 * 109.47067 * 58.03522 * 4 2 1 6 6 C 1.53003 * 109.46981 * 178.03288 * 4 2 1 7 7 N 1.46898 * 109.47062 * 305.00206 * 6 4 2 8 8 C 1.46906 * 111.00024 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47097 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46971 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99771 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00025 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99933 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46939 * 60.00348 * 14 12 10 16 16 H 1.48500 * 109.47006 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47307 * 299.99921 * 14 12 10 18 18 C 1.50694 * 109.47488 * 298.03513 * 4 2 1 19 19 C 1.34515 * 125.79300 * 132.12928 * 18 4 2 20 20 C 1.41385 * 106.84119 * 180.02562 * 19 18 4 21 21 C 1.34506 * 106.84170 * 359.97438 * 20 19 18 22 22 O 1.34302 * 108.42392 * 359.73543 * 21 20 19 23 23 H 1.08998 * 109.46889 * 296.05017 * 1 2 3 24 24 H 1.09005 * 109.46762 * 56.04214 * 1 2 3 25 25 H 1.08995 * 109.47160 * 176.04244 * 1 2 3 26 26 H 1.08998 * 109.47141 * 176.75323 * 3 2 1 27 27 H 1.09003 * 109.47500 * 296.74833 * 3 2 1 28 28 H 1.08997 * 109.47511 * 56.75068 * 3 2 1 29 29 H 1.09001 * 109.46849 * 185.00378 * 6 4 2 30 30 H 1.08993 * 109.46805 * 65.00209 * 6 4 2 31 31 H 1.00904 * 111.00269 * 303.95042 * 7 6 4 32 32 H 1.09001 * 109.46541 * 299.99736 * 8 7 6 33 33 H 1.08995 * 109.47199 * 59.99714 * 8 7 6 34 34 H 1.09000 * 109.46656 * 299.99600 * 9 8 7 35 35 H 1.08998 * 109.47061 * 59.99452 * 9 8 7 36 36 H 0.96996 * 119.99785 * 180.02562 * 13 12 10 37 37 H 1.08003 * 126.57972 * 0.03132 * 19 18 4 38 38 H 1.08000 * 126.57619 * 179.97438 * 20 19 18 39 39 H 1.08002 * 125.79300 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6177 -1.7874 1.0937 6 6 3.5242 -0.7844 1.0763 7 7 3.9557 -1.3026 -0.2287 8 6 5.4213 -1.3354 -0.3237 9 6 5.8316 -1.8789 -1.6938 10 6 7.3350 -1.9120 -1.7914 11 1 7.9376 -1.5782 -0.9595 12 6 7.9413 -2.3682 -2.9426 13 7 7.2075 -2.7741 -3.9557 14 14 9.8049 -2.4085 -3.0639 15 1 10.3514 -3.2868 -1.9984 16 1 10.2031 -2.9373 -4.3931 17 1 10.3417 -1.0342 -2.8963 18 6 1.5521 -0.1213 2.4255 19 6 1.0081 -0.7587 3.4777 20 6 0.7456 0.2232 4.4605 21 6 1.1454 1.4018 3.9503 22 8 1.6387 1.1863 2.7199 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5741 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0835 1.3429 0.0582 27 1 1.6939 1.8764 -0.9177 28 1 1.5997 1.9125 0.8594 29 1 3.9117 -1.4255 1.8680 30 1 3.9053 0.2280 1.2093 31 1 3.5619 -2.2150 -0.4037 32 1 5.8160 -0.3269 -0.2002 33 1 5.8217 -1.9805 0.4583 34 1 5.4368 -2.8874 -1.8176 35 1 5.4311 -1.2335 -2.4755 36 1 7.6340 -3.0954 -4.7655 37 1 0.8100 -1.8175 3.5568 38 1 0.3081 0.0585 5.4341 39 1 1.0847 2.3586 4.4477 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309485078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:35 Heat of formation + Delta-G solvation = 22.905451 kcal Electronic energy + Delta-G solvation = -18608.732824 eV Core-core repulsion = 15746.278680 eV Total energy + Delta-G solvation = -2862.454144 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.75457 -38.13087 -35.34082 -33.21794 -32.86306 -31.08713 -29.37295 -27.50805 -26.96181 -24.32768 -23.07707 -21.87695 -21.58074 -20.53930 -19.88512 -17.35855 -16.47152 -16.23863 -15.88981 -15.16928 -14.99119 -14.39222 -14.36761 -13.79599 -13.54757 -13.04969 -12.88053 -12.74253 -12.64079 -12.23910 -12.01506 -11.88368 -11.58690 -11.44084 -11.09417 -10.87956 -10.75641 -10.51833 -10.03453 -9.92278 -9.34971 -9.11176 -8.60835 -8.29858 -8.24170 -7.66816 -5.94553 -3.96991 1.60935 2.48537 2.86236 3.36656 3.40866 3.43309 4.04830 4.38265 4.51322 4.82435 4.89924 5.04442 5.05078 5.30334 5.33827 5.41168 5.46176 5.62295 5.67661 5.71497 5.76527 5.80845 5.88273 5.97694 6.05926 6.30881 6.35648 6.40066 6.46912 6.92703 7.04743 7.09878 7.17243 7.55865 7.79844 7.90600 8.04980 8.16794 8.49715 9.10398 9.66339 11.16798 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003879 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.892542 B = 7216.676206 C = 7535.826034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.508 5.508 3 C 0.020 3.980 4 C 0.166 3.834 5 H 0.108 0.892 6 C 0.066 3.934 7 N -0.671 5.671 8 C 0.066 3.934 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.030 4.030 19 C -0.211 4.211 20 C -0.214 4.214 21 C -0.053 4.053 22 O -0.165 6.165 23 H 0.021 0.979 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.337 0.663 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.013 0.987 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.145 6.529 14.517 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.229 5.229 3 C -0.128 4.128 4 C 0.056 3.944 5 H 0.126 0.874 6 C -0.065 4.065 7 N -0.302 5.302 8 C -0.062 4.062 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.083 4.083 19 C -0.231 4.231 20 C -0.233 4.233 21 C -0.120 4.120 22 O -0.061 6.061 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.896 7.064 13.345 21.211 hybrid contribution 0.801 -0.516 1.593 1.856 sum -14.095 6.548 14.938 21.557 Atomic orbital electron populations 1.22421 0.87809 1.02088 1.00213 1.62030 1.06844 1.14732 1.39270 1.22575 1.01949 0.87868 1.00361 1.20707 0.96317 0.96850 0.80562 0.87435 1.22000 0.91455 1.01018 0.91996 1.60454 1.10687 1.31221 1.27825 1.22168 0.84314 0.99613 1.00080 1.19040 0.95394 0.96111 0.90476 1.21158 0.91944 1.42838 1.00154 0.92909 1.24992 0.98058 0.95454 0.95807 1.69965 1.35102 1.43354 1.04791 0.86665 0.85926 0.78344 0.77082 1.20345 1.21292 1.20255 1.23809 1.03646 0.81340 0.99472 1.21649 1.06662 1.00746 0.94077 1.21798 1.07285 0.92739 1.01501 1.24098 1.02708 1.00455 0.84776 1.84225 1.64294 1.26661 1.30939 0.96019 0.91274 0.91487 0.90250 0.91603 0.94813 0.95197 0.90895 0.84543 0.92574 0.96954 0.96819 0.95512 0.92976 0.83656 0.83733 0.78494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.34 60.07 0.56 0.82 16 2 N -0.51 -6.86 4.75 -244.59 -1.16 -8.03 16 3 C 0.02 0.27 8.78 60.06 0.53 0.80 16 4 C 0.17 2.14 2.51 -68.87 -0.17 1.97 16 5 H 0.11 1.28 8.11 -51.93 -0.42 0.85 16 6 C 0.07 0.98 4.59 -3.82 -0.02 0.96 16 7 N -0.67 -12.04 6.23 -113.78 -0.71 -12.75 16 8 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 9 C 0.03 0.72 5.23 -27.88 -0.15 0.57 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.03 -0.37 4.51 -35.63 -0.16 -0.53 16 19 C -0.21 -2.38 10.79 -39.70 -0.43 -2.81 16 20 C -0.21 -2.16 10.91 -39.70 -0.43 -2.59 16 21 C -0.05 -0.52 12.09 29.41 0.36 -0.17 16 22 O -0.17 -2.06 7.86 5.69 0.04 -2.01 16 23 H 0.02 0.25 7.15 -51.93 -0.37 -0.12 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.19 6.00 -51.93 -0.31 0.88 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.43 5.56 -51.93 -0.29 0.15 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.14 6.50 -51.93 -0.34 0.80 16 31 H 0.34 5.86 8.73 -39.29 -0.34 5.52 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.41 319.34 -7.91 -39.32 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.27 Total: 1.60 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.35 Total: -13.33 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -1.14 Total: -47.28 kcal Atomic # 8 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.41 -7.91 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309485078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.224 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds