Wall clock time and date at job start Mon Mar 30 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46894 * 110.99872 * 2 1 4 4 C 1.46892 * 110.99775 * 123.95261 * 2 1 3 5 5 H 1.09000 * 109.47067 * 58.03522 * 4 2 1 6 6 C 1.53003 * 109.46981 * 178.03288 * 4 2 1 7 7 N 1.46898 * 109.47062 * 305.00206 * 6 4 2 8 8 C 1.46906 * 111.00024 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47097 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46971 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99771 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00025 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99933 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46939 * 60.00348 * 14 12 10 16 16 H 1.48500 * 109.47006 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47307 * 299.99921 * 14 12 10 18 18 C 1.50694 * 109.47488 * 298.03513 * 4 2 1 19 19 C 1.34515 * 125.79300 * 132.12928 * 18 4 2 20 20 C 1.41385 * 106.84119 * 180.02562 * 19 18 4 21 21 C 1.34506 * 106.84170 * 359.97438 * 20 19 18 22 22 O 1.34302 * 108.42392 * 359.73543 * 21 20 19 23 23 H 1.08998 * 109.46889 * 296.05017 * 1 2 3 24 24 H 1.09005 * 109.46762 * 56.04214 * 1 2 3 25 25 H 1.08995 * 109.47160 * 176.04244 * 1 2 3 26 26 H 1.08998 * 109.47141 * 176.75323 * 3 2 1 27 27 H 1.09003 * 109.47500 * 296.74833 * 3 2 1 28 28 H 1.08997 * 109.47511 * 56.75068 * 3 2 1 29 29 H 1.09001 * 109.46849 * 185.00378 * 6 4 2 30 30 H 1.08993 * 109.46805 * 65.00209 * 6 4 2 31 31 H 1.00904 * 111.00269 * 303.95042 * 7 6 4 32 32 H 1.09001 * 109.46541 * 299.99736 * 8 7 6 33 33 H 1.08995 * 109.47199 * 59.99714 * 8 7 6 34 34 H 1.09000 * 109.46656 * 299.99600 * 9 8 7 35 35 H 1.08998 * 109.47061 * 59.99452 * 9 8 7 36 36 H 0.96996 * 119.99785 * 180.02562 * 13 12 10 37 37 H 1.08003 * 126.57972 * 0.03132 * 19 18 4 38 38 H 1.08000 * 126.57619 * 179.97438 * 20 19 18 39 39 H 1.08002 * 125.79300 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6177 -1.7874 1.0937 6 6 3.5242 -0.7844 1.0763 7 7 3.9557 -1.3026 -0.2287 8 6 5.4213 -1.3354 -0.3237 9 6 5.8316 -1.8789 -1.6938 10 6 7.3350 -1.9120 -1.7914 11 1 7.9376 -1.5782 -0.9595 12 6 7.9413 -2.3682 -2.9426 13 7 7.2075 -2.7741 -3.9557 14 14 9.8049 -2.4085 -3.0639 15 1 10.3514 -3.2868 -1.9984 16 1 10.2031 -2.9373 -4.3931 17 1 10.3417 -1.0342 -2.8963 18 6 1.5521 -0.1213 2.4255 19 6 1.0081 -0.7587 3.4777 20 6 0.7456 0.2232 4.4605 21 6 1.1454 1.4018 3.9503 22 8 1.6387 1.1863 2.7199 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5741 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0835 1.3429 0.0582 27 1 1.6939 1.8764 -0.9177 28 1 1.5997 1.9125 0.8594 29 1 3.9117 -1.4255 1.8680 30 1 3.9053 0.2280 1.2093 31 1 3.5619 -2.2150 -0.4037 32 1 5.8160 -0.3269 -0.2002 33 1 5.8217 -1.9805 0.4583 34 1 5.4368 -2.8874 -1.8176 35 1 5.4311 -1.2335 -2.4755 36 1 7.6340 -3.0954 -4.7655 37 1 0.8100 -1.8175 3.5568 38 1 0.3081 0.0585 5.4341 39 1 1.0847 2.3586 4.4477 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309485078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:34 Heat of formation + Delta-G solvation = 0.909174 kcal Electronic energy + Delta-G solvation = -18609.686654 eV Core-core repulsion = 15746.278680 eV Total energy + Delta-G solvation = -2863.407974 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.59005 -39.22616 -36.90166 -34.93030 -34.01522 -32.40939 -30.84867 -28.64061 -28.15207 -26.04749 -24.40439 -22.71852 -22.63025 -22.35199 -20.85524 -18.48409 -18.21127 -17.50753 -16.92315 -16.55741 -16.15790 -16.09013 -15.56830 -15.09253 -14.77371 -14.38813 -14.10825 -13.92824 -13.80922 -13.51589 -13.19920 -13.08436 -12.93656 -12.81727 -12.66170 -12.46542 -12.39285 -11.96484 -11.85371 -11.37937 -11.25235 -10.83957 -10.53188 -9.48130 -9.24280 -9.13632 -8.17399 -6.28952 0.77466 1.41547 1.44981 1.52865 1.69453 2.05303 2.42674 3.06212 3.15744 3.32007 3.82147 3.90006 4.11629 4.21771 4.28157 4.34022 4.52544 4.54518 4.56401 4.68201 4.69173 4.75148 4.81188 4.94183 5.00813 5.01728 5.10602 5.12232 5.28903 5.47495 5.59410 5.72423 5.81221 5.99386 6.11887 6.17388 6.25666 6.34272 6.62543 6.88565 7.40024 8.94517 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003879 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.892542 B = 7216.676206 C = 7535.826034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.527 5.527 3 C 0.027 3.973 4 C 0.173 3.827 5 H 0.118 0.882 6 C 0.072 3.928 7 N -0.674 5.674 8 C 0.086 3.914 9 C 0.035 3.965 10 C -0.547 4.547 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.051 4.051 19 C -0.212 4.212 20 C -0.224 4.224 21 C -0.052 4.052 22 O -0.184 6.184 23 H 0.021 0.979 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.341 0.659 32 H 0.052 0.948 33 H 0.017 0.983 34 H -0.008 1.008 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 6.819 16.128 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.248 5.248 3 C -0.121 4.121 4 C 0.063 3.937 5 H 0.136 0.864 6 C -0.058 4.058 7 N -0.305 5.305 8 C -0.043 4.043 9 C -0.002 4.002 10 C -0.585 4.585 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.104 4.104 19 C -0.232 4.232 20 C -0.243 4.243 21 C -0.119 4.119 22 O -0.080 6.080 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.176 0.824 38 H 0.185 0.815 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.972 7.356 14.977 22.418 hybrid contribution 0.739 -0.583 1.139 1.477 sum -14.233 6.773 16.116 22.543 Atomic orbital electron populations 1.22408 0.86406 1.02798 1.00392 1.62038 1.08220 1.14626 1.39932 1.22462 1.00623 0.88305 1.00735 1.20528 0.94477 0.97502 0.81164 0.86414 1.21972 0.93301 1.00255 0.90287 1.60329 1.08433 1.31548 1.30202 1.21764 0.86597 0.98923 0.97029 1.18875 0.94575 0.94364 0.92429 1.21602 0.93228 1.43008 1.00659 0.92285 1.25964 1.03647 0.94759 0.95291 1.70105 1.37470 1.44072 1.05439 0.85489 0.79169 0.78870 0.77428 1.19124 1.20763 1.19245 1.23588 1.05478 0.81695 0.99591 1.21950 1.05627 1.01675 0.93905 1.22138 1.07467 0.92421 1.02309 1.24843 1.01233 1.01995 0.83791 1.84193 1.64886 1.26748 1.32203 0.96034 0.90754 0.90571 0.92270 0.91417 0.94202 0.94502 0.91780 0.84145 0.92926 0.96515 0.98920 0.98779 0.92751 0.82410 0.81500 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.34 127.69 1.19 1.79 16 2 N -0.53 -13.96 4.75 -927.75 -4.41 -18.37 16 3 C 0.03 0.71 8.78 127.69 1.12 1.83 16 4 C 0.17 4.33 2.51 44.17 0.11 4.44 16 5 H 0.12 2.65 8.11 -2.39 -0.02 2.63 16 6 C 0.07 2.11 4.59 86.30 0.40 2.51 16 7 N -0.67 -24.38 6.23 -513.88 -3.20 -27.58 16 8 C 0.09 3.71 5.62 86.30 0.49 4.19 16 9 C 0.04 1.91 5.23 29.85 0.16 2.07 16 10 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.08 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 14 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.05 -1.20 4.51 24.83 0.11 -1.09 16 19 C -0.21 -4.35 10.79 22.19 0.24 -4.11 16 20 C -0.22 -3.96 10.91 22.19 0.24 -3.72 16 21 C -0.05 -0.90 12.09 66.97 0.81 -0.09 16 22 O -0.18 -4.31 7.86 -2.56 -0.02 -4.33 16 23 H 0.02 0.46 7.15 -2.39 -0.02 0.44 16 24 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.81 6.00 -2.39 -0.01 1.79 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.01 5.56 -2.39 -0.01 1.00 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 2.01 6.50 -2.39 -0.02 2.00 16 31 H 0.34 11.92 8.73 -89.69 -0.78 11.14 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -67.46 319.34 0.48 -66.98 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.24 Total: 17.09 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.56 Total: -23.22 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -7.33 Total: -103.36 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.02 Total: -4.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.46 0.48 -66.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309485078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.889 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds