Wall clock time and date at job start Mon Mar 30 2020 04:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 C 1.50708 * 109.46933 * 240.00577 * 2 1 3 5 5 H 1.08001 * 119.99732 * 239.99674 * 4 2 1 6 6 C 1.37871 * 119.99942 * 59.99531 * 4 2 1 7 7 N 1.31511 * 120.00625 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99668 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47227 * 90.00536 * 8 6 4 10 10 H 1.48504 * 109.46845 * 210.00096 * 8 6 4 11 11 H 1.48501 * 109.47178 * 330.00228 * 8 6 4 12 12 N 1.46892 * 109.47375 * 120.00448 * 2 1 3 13 13 C 1.46901 * 111.00225 * 274.99888 * 12 2 1 14 14 C 1.50699 * 109.47453 * 180.02562 * 13 12 2 15 15 C 1.34377 * 126.52567 * 94.68758 * 14 13 12 16 16 N 1.34398 * 108.31578 * 179.89867 * 15 14 13 17 17 C 1.31192 * 109.30466 * 0.37158 * 16 15 14 18 18 N 1.38502 * 125.79291 * 179.76896 * 17 16 15 19 19 C 1.46898 * 110.99866 * 297.23373 * 18 17 16 20 20 C 1.46896 * 110.99394 * 61.18111 * 18 17 16 21 21 N 1.36032 * 108.41918 * 359.77569 * 17 16 15 22 22 C 1.46504 * 126.49584 * 179.97438 * 21 17 16 23 23 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46875 * 299.99419 * 1 2 3 25 25 H 1.08994 * 109.47215 * 59.99953 * 1 2 3 26 26 H 0.96999 * 120.00946 * 180.02562 * 7 6 4 27 27 H 1.00902 * 111.00363 * 38.95201 * 12 2 1 28 28 H 1.09000 * 109.46822 * 60.00038 * 13 12 2 29 29 H 1.09002 * 109.46753 * 300.00161 * 13 12 2 30 30 H 1.08000 * 125.84418 * 0.03291 * 15 14 13 31 31 H 1.08997 * 109.47892 * 59.99343 * 19 18 17 32 32 H 1.09002 * 109.47106 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.46914 * 299.99095 * 19 18 17 34 34 H 1.09005 * 109.47443 * 55.72221 * 20 18 17 35 35 H 1.09003 * 109.46781 * 175.71529 * 20 18 17 36 36 H 1.09001 * 109.47694 * 295.71500 * 20 18 17 37 37 H 1.08993 * 109.47246 * 264.83667 * 22 21 17 38 38 H 1.09001 * 109.46459 * 24.83354 * 22 21 17 39 39 H 1.08997 * 109.47028 * 144.83239 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3447 -2.1613 -4.4126 10 1 2.4871 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7122 12 7 2.0197 -0.6925 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.5887 -0.5217 3.5556 15 6 3.8615 -0.5827 3.9823 16 7 3.8993 -1.3412 5.0911 17 6 2.6890 -1.7646 5.3685 18 7 2.3390 -2.5746 6.4361 19 6 2.9936 -3.8860 6.3387 20 6 2.6520 -1.9237 7.7152 21 7 1.8361 -1.2734 4.4295 22 6 0.3905 -1.5015 4.3609 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7087 1.1616 -3.4844 27 1 1.4496 -1.4980 1.4099 28 1 1.0872 0.6161 2.5525 29 1 2.7590 1.0461 2.1181 30 1 4.7087 -0.1023 3.5155 31 1 4.0755 -3.7533 6.3406 32 1 2.7012 -4.5021 7.1890 33 1 2.6894 -4.3761 5.4138 34 1 2.1595 -0.9522 7.7587 35 1 2.2982 -2.5473 8.5363 36 1 3.7302 -1.7887 7.8001 37 1 0.1858 -2.3356 3.6898 38 1 0.0119 -1.7346 5.3561 39 1 -0.1015 -0.6041 3.9858 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309500776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:08 Heat of formation + Delta-G solvation = 76.715463 kcal Electronic energy + Delta-G solvation = -18759.115616 eV Core-core repulsion = 15931.287600 eV Total energy + Delta-G solvation = -2827.828015 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83845 -37.20432 -35.97010 -33.74891 -32.66436 -30.16935 -27.77868 -27.60890 -26.86866 -25.25206 -24.75418 -23.36093 -20.45124 -20.21408 -19.46190 -17.14353 -16.31104 -16.01141 -15.40800 -14.89270 -14.62860 -14.47297 -14.19758 -13.62107 -13.44722 -12.84638 -12.71741 -12.62615 -12.43263 -12.31082 -12.04445 -11.89408 -11.70487 -11.53024 -10.95597 -10.82608 -10.57092 -10.20960 -10.04289 -9.84490 -9.33694 -9.05369 -8.92983 -8.38618 -8.00525 -7.29858 -6.00667 -4.03952 2.14083 2.67538 3.27769 3.32124 3.38693 3.44163 3.87861 4.43582 4.85093 4.91328 5.00119 5.19801 5.25852 5.31161 5.33183 5.34922 5.43036 5.49575 5.57274 5.62346 5.70373 5.76038 6.06117 6.11497 6.39247 6.59418 6.60365 6.70894 6.77560 7.01041 7.03791 7.27710 7.61491 7.67816 7.85251 8.20833 8.24518 8.44640 8.55275 9.03321 9.61636 11.06340 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038689 B = 0.004362 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.549316 B = 6417.876811 C = 6590.668971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.675 5.675 13 C 0.134 3.866 14 C 0.007 3.993 15 C -0.010 4.010 16 N -0.508 5.508 17 C 0.352 3.648 18 N -0.473 5.473 19 C 0.037 3.963 20 C 0.038 3.962 21 N -0.443 5.443 22 C 0.078 3.922 23 H 0.027 0.973 24 H 0.003 0.997 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.323 0.677 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.170 0.830 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -4.532 17.211 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.305 5.305 13 C 0.003 3.997 14 C -0.108 4.108 15 C -0.159 4.159 16 N -0.230 5.230 17 C 0.001 3.999 18 N -0.197 5.197 19 C -0.111 4.111 20 C -0.110 4.110 21 N -0.129 5.129 22 C -0.065 4.065 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.043 0.957 29 H 0.109 0.891 30 H 0.187 0.813 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.250 -4.607 17.329 17.933 hybrid contribution -0.752 -0.060 -1.132 1.360 sum -1.002 -4.667 16.197 16.886 Atomic orbital electron populations 1.22443 1.00704 0.99150 1.00526 1.19222 0.89569 0.94584 0.86302 0.94573 1.21139 1.30245 1.12477 0.89483 0.91903 1.24938 0.95316 0.95171 0.99043 1.69870 1.37372 1.23150 1.23409 0.86502 0.79302 0.79223 0.82402 1.20876 1.21341 1.19812 1.60889 1.58168 1.08688 1.02782 1.20348 0.98619 0.94513 0.86193 1.21467 0.92190 1.01481 0.95701 1.21875 0.95648 1.03114 0.95235 1.70598 1.20114 1.15394 1.16927 1.20610 0.84619 1.01441 0.93212 1.58651 1.58396 1.02791 0.99906 1.22376 0.97832 0.88070 1.02778 1.22357 1.00594 0.99271 0.88759 1.45308 1.08411 1.37870 1.21318 1.21941 0.77500 1.02925 1.04144 0.95392 0.97749 0.89095 0.93038 0.86089 0.95657 0.89099 0.81282 0.93666 0.90645 0.91290 0.91544 0.90654 0.93745 0.90666 0.89167 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.94 37.16 0.33 -3.58 16 2 C 0.21 5.16 2.57 -68.86 -0.18 4.98 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.56 16 4 C -0.49 -13.56 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -14.12 6.22 -109.22 -0.68 -14.80 16 13 C 0.13 2.36 5.74 -4.98 -0.03 2.34 16 14 C 0.01 0.11 6.48 -81.34 -0.53 -0.42 16 15 C -0.01 -0.16 11.76 -17.79 -0.21 -0.37 16 16 N -0.51 -8.68 11.19 -13.91 -0.16 -8.84 16 17 C 0.35 5.38 6.32 -319.60 -2.02 3.36 16 18 N -0.47 -5.80 4.87 -190.47 -0.93 -6.73 16 19 C 0.04 0.40 9.51 60.06 0.57 0.97 16 20 C 0.04 0.38 9.49 60.06 0.57 0.95 16 21 N -0.44 -6.67 3.20 -120.30 -0.39 -7.06 16 22 C 0.08 0.91 10.94 59.85 0.66 1.57 16 23 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.32 6.55 8.46 -39.29 -0.33 6.22 16 28 H 0.03 0.43 6.81 -51.93 -0.35 0.08 16 29 H 0.09 1.61 8.06 -51.93 -0.42 1.19 16 30 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 31 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16 39 H 0.08 0.90 7.50 -51.93 -0.39 0.51 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -30.30 322.96 -9.27 -39.57 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.36 Total: 3.96 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.23 Total: -2.64 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.52 Total: -62.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.30 -9.27 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309500776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.284 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds