Wall clock time and date at job start Mon Mar 30 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48502 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47544 * 300.00238 * 3 2 1 6 6 H 1.48507 * 109.46911 * 60.00837 * 3 2 1 7 7 C 1.37875 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00418 * 180.02562 * 10 9 7 12 12 C 1.53100 * 109.52546 * 274.67819 * 11 10 9 13 13 C 1.53034 * 109.29029 * 182.43311 * 12 11 10 14 14 N 1.46845 * 109.51577 * 59.18741 * 13 12 11 15 15 C 1.46898 * 111.00004 * 174.16501 * 14 13 12 16 16 C 1.54256 * 110.03492 * 298.50123 * 15 14 13 17 17 C 1.54967 * 104.16382 * 217.14034 * 16 15 14 18 18 C 1.54884 * 102.77595 * 37.88694 * 17 16 15 19 19 C 1.53877 * 110.03017 * 181.28168 * 15 14 13 20 20 C 1.46852 * 111.19347 * 298.25886 * 14 13 12 21 21 C 1.53036 * 109.52339 * 61.74741 * 20 14 13 22 22 H 0.97004 * 119.99612 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46872 * 60.00005 * 9 7 2 24 24 H 1.08997 * 109.47114 * 300.00393 * 9 7 2 25 25 H 1.00897 * 111.00173 * 56.04515 * 10 9 7 26 26 H 1.09000 * 109.52108 * 34.87143 * 11 10 9 27 27 H 1.09007 * 109.48924 * 62.49084 * 12 11 10 28 28 H 1.08997 * 109.50351 * 302.38368 * 12 11 10 29 29 H 1.08997 * 109.46477 * 299.16909 * 13 12 11 30 30 H 1.09004 * 109.45970 * 179.19221 * 13 12 11 31 31 H 1.09001 * 110.01785 * 59.89382 * 15 14 13 32 32 H 1.09007 * 110.48717 * 335.78750 * 16 15 14 33 33 H 1.09004 * 110.48748 * 98.42670 * 16 15 14 34 34 H 1.09000 * 110.71632 * 279.57065 * 17 16 15 35 35 H 1.08996 * 110.92214 * 156.29977 * 17 16 15 36 36 H 1.09002 * 110.48574 * 203.40810 * 18 17 16 37 37 H 1.08996 * 110.48814 * 80.76753 * 18 17 16 38 38 H 1.08996 * 110.03701 * 238.56733 * 19 15 14 39 39 H 1.08999 * 110.03762 * 0.02562 * 19 15 14 40 40 H 1.09006 * 109.45857 * 181.75949 * 20 14 13 41 41 H 1.08999 * 109.46651 * 301.73664 * 20 14 13 42 42 H 1.08999 * 109.50761 * 60.75754 * 21 20 14 43 43 H 1.08994 * 109.50446 * 180.87973 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 1.1574 -5.3012 1.4368 13 6 0.4826 -6.6747 1.4353 14 7 1.3895 -7.6662 0.8430 15 6 0.8312 -9.0207 0.9504 16 6 0.6466 -9.4002 2.4341 17 6 1.0080 -10.9061 2.4881 18 6 2.1912 -11.0103 1.4941 19 6 1.8125 -10.0441 0.3525 20 6 1.7001 -7.3342 -0.5533 21 6 2.4112 -5.9803 -0.6111 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6247 -2.5570 0.8896 25 1 2.8404 -3.5487 0.7808 26 1 0.5909 -4.8253 -0.5888 27 1 0.4781 -4.5624 1.8621 28 1 2.0688 -5.3441 2.0330 29 1 -0.4360 -6.6275 0.8504 30 1 0.2466 -6.9645 2.4593 31 1 -0.1252 -9.0724 0.4300 32 1 1.3244 -8.8226 3.0628 33 1 -0.3872 -9.2438 2.7422 34 1 0.1685 -11.5163 2.1549 35 1 1.3198 -11.1958 3.4916 36 1 2.2840 -12.0288 1.1168 37 1 3.1188 -10.6931 1.9704 38 1 1.3321 -10.5932 -0.4573 39 1 2.7031 -9.5359 -0.0169 40 1 2.3484 -8.1031 -0.9738 41 1 0.7759 -7.2837 -1.1290 42 1 3.3424 -6.0339 -0.0471 43 1 2.6277 -5.7269 -1.6488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309530587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:27 Heat of formation + Delta-G solvation = -16.656440 kcal Electronic energy + Delta-G solvation = -19050.391043 eV Core-core repulsion = 16322.054462 eV Total energy + Delta-G solvation = -2728.336581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64010 -37.35252 -34.76301 -32.64508 -30.90791 -30.47388 -28.66984 -27.31585 -25.70067 -23.03930 -22.64531 -21.23427 -20.52536 -19.74777 -19.43014 -16.84557 -16.23776 -15.74832 -14.86522 -14.66186 -14.47740 -14.00777 -13.83414 -13.59664 -13.45816 -13.29284 -12.46252 -12.24863 -11.92906 -11.86430 -11.37540 -11.25768 -11.19971 -11.12651 -10.95098 -10.93116 -10.85936 -10.74743 -10.63335 -10.47903 -10.16473 -10.11866 -9.70453 -9.10581 -8.46672 -8.21248 -7.19692 -6.01349 -4.02941 3.32222 3.39349 3.44840 3.91592 4.40648 4.44872 4.51161 4.80042 5.04469 5.12158 5.18374 5.27645 5.33839 5.35147 5.36624 5.49850 5.52540 5.56278 5.59056 5.68793 5.72013 5.75230 5.87363 5.90578 5.95208 5.98132 6.07265 6.11888 6.18300 6.22062 6.33158 6.41447 6.63102 6.74378 7.22792 7.25140 7.31602 7.47929 7.82424 8.16446 8.45554 8.67105 9.07271 9.62031 11.09763 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.056498 B = 0.003644 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.475547 B = 7681.355450 C = 7869.959568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.087 3.913 12 C -0.143 4.143 13 C 0.061 3.939 14 N -0.530 5.530 15 C 0.079 3.921 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.122 4.122 20 C 0.053 3.947 21 C -0.102 4.102 22 H 0.260 0.740 23 H 0.025 0.975 24 H -0.014 1.014 25 H 0.329 0.671 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -21.213 3.213 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.024 4.024 12 C -0.183 4.183 13 C -0.067 4.067 14 N -0.255 5.255 15 C -0.029 4.029 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.075 4.075 21 C -0.140 4.140 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.004 0.996 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.817 -21.028 2.763 21.287 hybrid contribution -0.886 0.962 0.443 1.381 sum 0.931 -20.066 3.206 20.342 Atomic orbital electron populations 1.69980 1.06084 1.26606 1.51179 1.24998 0.94874 0.99376 0.95415 0.86437 0.80103 0.83376 0.77466 1.19633 1.21032 1.21119 1.21253 0.93569 0.90317 1.49962 0.91937 1.19566 0.90651 0.87449 0.95581 1.60723 1.20792 1.01020 1.48852 1.21548 0.96358 0.90783 0.93738 1.22337 1.01185 0.95197 0.99583 1.22029 0.93403 0.92230 0.99085 1.62132 1.44375 1.01020 1.17992 1.22269 0.95668 0.88839 0.96155 1.22458 1.01175 0.95944 0.95942 1.22473 0.98108 0.96252 0.99337 1.22300 0.98504 0.98732 0.96230 1.22289 0.99743 0.96200 0.97721 1.22182 0.99055 0.98065 0.88180 1.21563 0.98948 0.92107 1.01395 0.93026 0.95676 0.99596 0.85388 0.91734 0.91493 0.91385 0.95282 0.91148 0.94408 0.90294 0.92110 0.91847 0.91633 0.92061 0.91427 0.92146 0.90382 0.90724 0.95340 0.91491 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.16 5.24 -4.98 -0.03 5.14 16 10 N -0.69 -14.95 6.24 -107.87 -0.67 -15.62 16 11 C 0.09 1.57 2.53 -67.60 -0.17 1.40 16 12 C -0.14 -2.33 5.35 -26.66 -0.14 -2.47 16 13 C 0.06 0.84 5.29 -3.84 -0.02 0.82 16 14 N -0.53 -6.80 4.44 -225.36 -1.00 -7.80 16 15 C 0.08 0.86 2.67 -66.60 -0.18 0.69 16 16 C -0.12 -1.15 5.15 -25.04 -0.13 -1.28 16 17 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 18 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 19 C -0.12 -1.16 5.87 -25.61 -0.15 -1.31 16 20 C 0.05 0.70 5.17 -3.83 -0.02 0.68 16 21 C -0.10 -1.55 5.70 -26.65 -0.15 -1.70 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 24 H -0.01 -0.38 7.51 -51.93 -0.39 -0.77 16 25 H 0.33 6.95 8.44 -39.29 -0.33 6.62 16 26 H 0.06 1.27 7.80 -51.93 -0.41 0.86 16 27 H 0.07 1.19 7.54 -51.92 -0.39 0.80 16 28 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.89 6.84 -51.93 -0.36 0.54 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.80 6.19 -51.93 -0.32 0.48 16 40 H 0.07 0.86 5.98 -51.93 -0.31 0.55 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -29.60 326.31 -10.74 -40.34 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.95 Total: 1.67 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.75 Total: -13.98 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.94 Total: -49.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.60 -10.74 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309530587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.681 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds