Wall clock time and date at job start Mon Mar 30 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30518 * 126.34818 * 60.01963 * 4 2 1 6 6 N 1.28591 * 109.67461 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67224 * 359.97438 * 6 5 4 8 8 C 1.50704 * 126.34352 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47172 * 90.02521 * 8 7 6 10 10 C 1.46901 * 110.99537 * 179.97438 * 9 8 7 11 11 H 1.08993 * 109.47672 * 324.99877 * 10 9 8 12 12 C 1.53001 * 109.47030 * 85.00072 * 10 9 8 13 13 C 1.50706 * 109.46832 * 204.99633 * 10 9 8 14 14 H 1.07994 * 120.00254 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99801 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00048 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99992 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47247 * 90.00067 * 17 15 13 19 19 H 1.48507 * 109.47240 * 209.99924 * 17 15 13 20 20 H 1.48498 * 109.46916 * 329.99895 * 17 15 13 21 21 N 1.35491 * 107.30813 * 359.77126 * 7 6 5 22 22 C 1.46499 * 126.98374 * 180.22365 * 21 7 6 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09004 * 109.46323 * 210.02301 * 8 7 6 31 31 H 1.09001 * 109.47205 * 330.01933 * 8 7 6 32 32 H 1.00896 * 110.99912 * 303.94877 * 9 8 7 33 33 H 1.09000 * 109.47306 * 299.99682 * 12 10 9 34 34 H 1.09003 * 109.47456 * 59.99803 * 12 10 9 35 35 H 1.09004 * 109.47195 * 179.97438 * 12 10 9 36 36 H 0.97003 * 119.99750 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47455 * 270.16110 * 22 21 7 38 38 H 1.09004 * 109.47026 * 30.15944 * 22 21 7 39 39 H 1.08997 * 109.47321 * 150.16076 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7950 -0.3739 -2.4691 6 7 2.3799 -1.2002 -3.2619 7 6 3.0174 -2.1011 -2.5652 8 6 3.8285 -3.2461 -3.1150 9 7 5.2225 -2.8180 -3.2924 10 6 6.0449 -3.9113 -3.8275 11 1 5.6974 -4.8605 -3.4197 12 6 5.9278 -3.9381 -5.3528 13 6 7.4844 -3.6941 -3.4379 14 1 7.7607 -2.8305 -2.8512 15 6 8.4487 -4.5979 -3.8306 16 7 8.1123 -5.6499 -4.5447 17 14 10.2329 -4.3291 -3.3472 18 1 10.4978 -4.9902 -2.0441 19 1 11.1204 -4.9102 -4.3865 20 1 10.4991 -2.8731 -3.2267 21 7 2.8196 -1.8128 -1.2562 22 6 3.3467 -2.5463 -0.1028 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 3.7916 -4.0844 -2.4191 31 1 3.4176 -3.5538 -4.0765 32 1 5.2776 -2.0015 -3.8826 33 1 4.8866 -4.0952 -5.6346 34 1 6.2754 -2.9889 -5.7607 35 1 6.5384 -4.7491 -5.7499 36 1 8.7908 -6.2855 -4.8212 37 1 2.6409 -3.3251 0.1860 38 1 4.3015 -3.0010 -0.3668 39 1 3.4898 -1.8586 0.7307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309586805.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:21 Heat of formation + Delta-G solvation = 44.661886 kcal Electronic energy + Delta-G solvation = -18690.514715 eV Core-core repulsion = 15861.296752 eV Total energy + Delta-G solvation = -2829.217963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.14354 -38.03884 -36.73002 -35.86429 -34.58548 -31.98778 -29.69445 -28.45205 -28.05103 -27.26461 -26.15558 -24.41493 -22.23262 -21.83453 -20.78845 -18.54802 -17.84304 -17.46491 -16.80112 -16.40079 -15.92429 -15.56234 -15.14625 -14.85314 -14.35895 -14.33856 -13.97263 -13.82332 -13.59306 -13.30124 -13.00516 -12.88148 -12.80496 -12.67022 -12.46698 -12.32625 -12.18413 -12.16130 -12.01042 -11.92919 -11.24978 -11.10730 -11.05266 -10.48252 -10.09178 -9.14851 -8.10003 -6.20919 0.79631 1.43862 1.45600 1.55424 1.57436 1.81179 2.44654 3.18348 3.19351 3.39915 3.70674 3.78037 3.87629 4.11285 4.14409 4.31254 4.37552 4.45238 4.63511 4.70046 4.71739 4.81655 4.84999 4.90846 4.94457 5.02999 5.05946 5.08674 5.18025 5.34201 5.34365 5.43354 5.68019 5.77103 5.95367 6.21735 6.52570 6.60750 6.90501 7.48570 7.74219 8.95603 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034762 B = 0.004486 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.287686 B = 6240.520147 C = 6596.728858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.004 4.004 3 C -0.138 4.138 4 C 0.180 3.820 5 N -0.333 5.333 6 N -0.336 5.336 7 C 0.184 3.816 8 C 0.150 3.850 9 N -0.676 5.676 10 C 0.219 3.781 11 H 0.018 0.982 12 C -0.160 4.160 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.273 1.273 21 N -0.462 5.462 22 C 0.062 3.938 23 H 0.096 0.904 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.330 0.670 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 7.336 13.601 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.089 4.089 5 N -0.173 5.173 6 N -0.176 5.176 7 C -0.085 4.085 8 C 0.018 3.982 9 N -0.307 5.307 10 C 0.111 3.889 11 H 0.035 0.965 12 C -0.219 4.219 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.560 5.560 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.198 1.198 21 N -0.151 5.151 22 C -0.079 4.079 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.524 7.772 13.009 19.659 hybrid contribution 1.290 -0.914 -0.312 1.612 sum -11.234 6.858 12.697 18.288 Atomic orbital electron populations 1.21772 0.91860 1.02286 1.03443 1.19866 0.97432 0.95804 0.89379 1.21792 1.00655 0.93723 1.03472 1.25530 0.96042 0.88979 0.98310 1.74031 1.21906 1.22084 0.99245 1.74137 1.12531 1.03609 1.27359 1.24762 1.01566 1.00533 0.81660 1.20165 0.87579 0.90767 0.99649 1.60789 1.06052 1.08564 1.55283 1.18978 0.91629 0.88576 0.89685 0.96455 1.22280 0.98131 1.01091 1.00433 1.21357 0.92600 1.08562 1.32768 0.92820 1.25658 1.02835 0.94948 0.95141 1.69997 1.34728 1.13126 1.38164 0.85535 0.79835 0.78196 0.77883 1.19982 1.21107 1.19760 1.46151 1.37623 1.23082 1.08233 1.22476 1.01526 0.98132 0.85781 0.88555 0.92944 0.93203 0.86778 0.88439 0.93486 0.93199 0.88553 0.92972 0.85309 0.95548 0.95386 0.91523 0.92922 0.87815 0.89059 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.18 71.98 0.66 -1.37 16 2 C 0.00 -0.07 3.27 -11.54 -0.04 -0.11 16 3 C -0.14 -2.28 9.17 71.98 0.66 -1.62 16 4 C 0.18 5.00 6.54 137.98 0.90 5.90 16 5 N -0.33 -12.03 12.21 -50.15 -0.61 -12.64 16 6 N -0.34 -13.32 12.21 -50.15 -0.61 -13.94 16 7 C 0.18 6.44 7.54 137.98 1.04 7.48 16 8 C 0.15 5.37 5.65 85.56 0.48 5.85 16 9 N -0.68 -28.35 6.22 -499.44 -3.11 -31.45 16 10 C 0.22 10.74 2.57 44.17 0.11 10.85 16 11 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 12 C -0.16 -7.70 8.94 71.98 0.64 -7.06 16 13 C -0.51 -27.77 8.84 25.60 0.23 -27.55 16 14 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 15 C 0.01 0.69 5.30 84.65 0.45 1.14 16 16 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 17 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 N -0.46 -12.85 3.15 -527.24 -1.66 -14.51 16 22 C 0.06 1.14 10.58 127.77 1.35 2.49 16 23 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.11 1.28 6.89 -2.39 -0.02 1.26 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 3.13 7.79 -2.39 -0.02 3.11 16 31 H 0.05 1.93 7.44 -2.39 -0.02 1.91 16 32 H 0.33 14.33 8.46 -89.70 -0.76 13.57 16 33 H 0.03 1.13 7.45 -2.39 -0.02 1.11 16 34 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.07 3.55 6.07 -2.38 -0.01 3.53 16 36 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 2.01 7.82 -2.39 -0.02 1.99 16 39 H 0.12 1.42 7.18 -2.39 -0.02 1.40 16 Total: -1.00 -67.46 321.72 3.04 -64.41 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.27 Total: 18.51 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 6.49 Total: -4.00 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.75 Total: -123.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -67.46 3.04 -64.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309586805.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.077 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds