Wall clock time and date at job start Mon Mar 30 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47174 * 2 1 4 4 N 1.30833 * 125.95883 * 265.19034 * 3 2 1 5 5 C 1.33246 * 109.82627 * 180.23770 * 4 3 2 6 6 C 1.50698 * 125.52316 * 179.73039 * 5 4 3 7 7 H 1.09002 * 109.47611 * 15.01684 * 6 5 4 8 8 C 1.53004 * 109.47194 * 255.01427 * 6 5 4 9 9 N 1.46903 * 109.47060 * 135.01666 * 6 5 4 10 10 C 1.46896 * 111.00194 * 205.00060 * 9 6 5 11 11 C 1.53006 * 109.47530 * 180.02562 * 10 9 6 12 12 C 1.52994 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46824 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00534 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99679 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47270 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46920 * 120.00198 * 17 15 13 20 20 H 1.48502 * 109.47142 * 239.99807 * 17 15 13 21 21 N 1.30709 * 108.94800 * 359.76504 * 5 4 3 22 22 N 1.34429 * 125.96217 * 85.02191 * 3 2 1 23 23 H 0.97001 * 126.82629 * 0.04437 * 22 3 2 24 24 H 1.09002 * 109.47085 * 300.00582 * 1 2 3 25 25 H 1.09000 * 109.47143 * 59.99987 * 1 2 3 26 26 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47354 * 239.99770 * 2 1 3 28 28 H 1.09008 * 109.47060 * 119.99351 * 2 1 3 29 29 H 1.08999 * 109.46589 * 300.00375 * 8 6 5 30 30 H 1.08999 * 109.46861 * 60.00270 * 8 6 5 31 31 H 1.08999 * 109.46925 * 180.02562 * 8 6 5 32 32 H 1.00901 * 111.00341 * 328.94937 * 9 6 5 33 33 H 1.09004 * 109.47235 * 300.00052 * 10 9 6 34 34 H 1.09000 * 109.47733 * 59.99733 * 10 9 6 35 35 H 1.09002 * 109.46275 * 299.99520 * 11 10 9 36 36 H 1.09000 * 109.47016 * 59.99067 * 11 10 9 37 37 H 1.08999 * 109.47150 * 299.99611 * 12 11 10 38 38 H 1.08995 * 109.47338 * 59.99924 * 12 11 10 39 39 H 0.96999 * 120.00918 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3721 2.1155 -1.0553 5 6 2.7744 3.3309 -0.6859 6 6 3.2493 4.4166 -1.6169 7 1 2.9692 4.1661 -2.6401 8 6 4.7712 4.5413 -1.5207 9 7 2.6285 5.6929 -1.2378 10 6 2.5629 6.6078 -2.3852 11 6 1.9124 7.9233 -1.9522 12 6 1.8447 8.8763 -3.1472 13 6 1.2035 10.1717 -2.7208 14 1 0.8765 10.3020 -1.6997 15 6 1.0342 11.1905 -3.6342 16 7 1.4327 11.0321 -4.8774 17 14 0.2387 12.7960 -3.1058 18 1 -0.1173 12.7217 -1.6660 19 1 1.1906 13.9150 -3.3228 20 1 -0.9890 13.0278 -3.9084 21 7 2.6910 3.4285 0.6148 22 7 2.2064 2.1966 1.0840 23 1 2.0355 1.9526 2.0071 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.0512 4.7918 -0.4975 30 1 5.2318 3.5944 -1.8020 31 1 5.1146 5.3269 -2.1938 32 1 1.7129 5.5457 -0.8401 33 1 3.5706 6.8044 -2.7513 34 1 1.9703 6.1531 -3.1791 35 1 0.9047 7.7269 -1.5861 36 1 2.5053 8.3777 -1.1585 37 1 2.8525 9.0725 -3.5130 38 1 1.2520 8.4220 -3.9411 39 1 1.3133 11.7487 -5.5201 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309646501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:39 Heat of formation + Delta-G solvation = 58.257439 kcal Electronic energy + Delta-G solvation = -17805.499919 eV Core-core repulsion = 14976.871504 eV Total energy + Delta-G solvation = -2828.628415 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.34963 -37.13313 -34.67562 -33.77381 -32.66191 -31.70408 -30.02832 -29.12499 -26.04721 -24.75891 -23.96645 -22.19504 -20.91746 -20.31293 -19.66305 -18.06052 -16.26970 -15.96221 -15.78851 -15.14766 -14.70500 -14.54011 -14.41136 -13.96225 -13.47374 -12.99286 -12.55625 -12.51914 -12.13715 -12.00073 -11.87992 -11.75125 -11.55854 -11.40156 -11.09381 -10.78795 -10.50577 -10.45526 -10.22203 -10.17125 -9.66952 -9.62570 -9.27556 -8.98598 -8.29450 -8.15521 -5.94459 -3.96120 1.41559 2.43082 2.69046 3.35046 3.42204 3.47147 3.62407 4.27329 4.36396 4.48952 4.54095 4.70090 4.91909 5.04563 5.30955 5.34103 5.38345 5.41405 5.51315 5.69915 5.78146 5.85305 5.92026 6.00440 6.11076 6.21878 6.34045 6.43449 6.77856 6.79763 6.86369 7.20193 7.35486 7.62250 7.75274 7.90443 7.97521 8.06630 8.50171 9.11406 9.67616 11.17081 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036175 B = 0.003207 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.834598 B = 8728.837808 C = 9015.528255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.279 3.721 4 N -0.535 5.535 5 C 0.228 3.772 6 C 0.177 3.823 7 H 0.070 0.930 8 C -0.133 4.133 9 N -0.677 5.677 10 C 0.058 3.942 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.286 5.286 22 N -0.486 5.486 23 H 0.438 0.562 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -23.957 10.517 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C 0.001 3.999 4 N -0.264 5.264 5 C -0.056 4.056 6 C 0.064 3.936 7 H 0.088 0.912 8 C -0.192 4.192 9 N -0.310 5.310 10 C -0.070 4.070 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 N -0.115 5.115 22 N -0.204 5.204 23 H 0.283 0.717 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.197 -23.031 10.603 25.449 hybrid contribution -1.353 0.193 0.351 1.411 sum 0.843 -22.838 10.954 25.343 Atomic orbital electron populations 1.21763 0.93146 1.02922 1.02973 1.20177 0.96935 0.86385 1.05042 1.24375 0.96239 0.96199 0.83120 1.70369 1.21718 1.04840 1.29479 1.24374 0.97382 0.93397 0.90403 1.19822 0.95886 0.84208 0.93642 0.91189 1.21764 0.92628 1.01494 1.03337 1.60676 1.27813 1.10184 1.32287 1.22236 1.00977 0.93553 0.90235 1.21615 0.98571 0.93380 1.00828 1.19071 0.97159 0.93080 0.92273 1.21307 1.38987 0.99081 0.96156 0.92633 1.25029 0.95841 0.98724 0.94975 1.69973 1.47666 1.33012 1.02987 0.86550 0.79054 0.83763 0.78719 1.19740 1.21033 1.21089 1.78174 1.21002 0.99835 1.12449 1.48104 1.51498 1.10479 1.10313 0.71661 0.92538 0.91526 0.90975 0.87869 0.89440 0.91598 0.92691 0.91147 0.84159 0.91049 0.95476 0.93741 0.92433 0.96476 0.96775 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.15 0.37 -0.39 16 2 C -0.05 -0.25 6.56 -27.89 -0.18 -0.43 16 3 C 0.28 2.81 7.49 -155.69 -1.17 1.65 16 4 N -0.54 -7.28 11.19 -8.16 -0.09 -7.37 16 5 C 0.23 3.32 6.64 -156.85 -1.04 2.28 16 6 C 0.18 2.59 3.16 -68.86 -0.22 2.37 16 7 H 0.07 1.03 7.80 -51.93 -0.40 0.63 16 8 C -0.13 -1.77 9.40 37.16 0.35 -1.42 16 9 N -0.68 -11.05 6.29 -107.95 -0.68 -11.73 16 10 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 11 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 12 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 13 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 17 Si 0.89 22.17 29.54 -169.99 -5.02 17.14 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 N -0.29 -4.04 12.78 32.42 0.41 -3.63 16 22 N -0.49 -4.86 7.45 32.62 0.24 -4.61 16 23 H 0.44 2.71 8.96 -182.33 -1.63 1.07 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.26 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.92 7.45 -51.93 -0.39 0.53 16 32 H 0.34 5.62 8.35 -39.29 -0.33 5.29 16 33 H 0.07 1.28 7.44 -51.93 -0.39 0.89 16 34 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -33.86 329.09 -9.80 -43.65 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.75 Total: -0.84 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.61 Total: -10.79 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.62 Total: -54.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.86 -9.80 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309646501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.911 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds