Wall clock time and date at job start Mon Mar 30 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99621 * 2 1 4 4 H 1.09005 * 110.01760 * 29.94302 * 3 2 1 5 5 C 1.54264 * 110.03472 * 268.55008 * 3 2 1 6 6 C 1.54895 * 104.19709 * 217.05705 * 5 3 2 7 7 C 1.54891 * 102.74636 * 37.93939 * 6 5 3 8 8 H 1.08999 * 110.49061 * 80.86966 * 7 6 5 9 9 N 1.46906 * 110.48548 * 203.37986 * 7 6 5 10 10 C 1.46898 * 110.99888 * 271.75831 * 9 7 6 11 11 C 1.53007 * 109.46764 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46962 * 54.99965 * 11 10 9 13 13 C 1.47200 * 109.47239 * 295.00110 * 11 10 9 14 14 N 8.08141 * 133.15070 * 1.36218 * 2 1 3 15 15 C 1.53003 * 109.46940 * 175.00201 * 11 10 9 16 16 C 1.50697 * 109.46842 * 185.00282 * 15 11 10 17 17 H 1.07995 * 120.00222 * 359.97438 * 16 15 11 18 18 C 1.37877 * 119.99781 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00270 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46705 * 59.99469 * 20 18 16 22 22 H 1.48499 * 109.47303 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46829 * 300.00263 * 20 18 16 24 24 C 1.54082 * 109.97138 * 151.38990 * 3 2 1 25 25 H 1.08998 * 109.47577 * 299.99185 * 1 2 3 26 26 H 1.08992 * 109.47799 * 60.00253 * 1 2 3 27 27 H 1.09012 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08993 * 110.48764 * 98.37495 * 5 3 2 29 29 H 1.09000 * 110.48522 * 335.73168 * 5 3 2 30 30 H 1.08999 * 110.75439 * 279.62781 * 6 5 3 31 31 H 1.08993 * 110.91404 * 156.32559 * 6 5 3 32 32 H 1.00902 * 110.99923 * 35.71772 * 9 7 6 33 33 H 1.08995 * 109.47296 * 299.99911 * 10 9 7 34 34 H 1.08997 * 109.47334 * 60.00212 * 10 9 7 35 35 H 1.09007 * 109.46462 * 304.99730 * 15 11 10 36 36 H 1.08997 * 109.47218 * 64.99496 * 15 11 10 37 37 H 0.97005 * 119.99700 * 180.02562 * 19 18 16 38 38 H 1.09006 * 110.16232 * 0.14366 * 24 3 2 39 39 H 1.09008 * 110.01042 * 238.65104 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3510 2.0073 0.5112 5 6 2.2585 1.7734 -1.4488 6 6 3.5945 2.5535 -1.3723 7 6 4.4189 1.7209 -0.3592 8 1 4.8661 0.8566 -0.8501 9 7 5.4581 2.5515 0.2638 10 6 6.6925 2.5354 -0.5325 11 6 7.7486 3.4101 0.1463 12 1 7.8901 3.0769 1.1743 13 6 7.3008 4.8123 0.1422 14 7 6.9560 5.8942 0.1402 15 6 9.0714 3.2949 -0.6140 16 6 10.1422 4.0575 0.1228 17 1 9.9031 4.5731 1.0411 18 6 11.4269 4.0978 -0.3762 19 7 11.7178 3.4704 -1.4948 20 14 12.7541 5.0437 0.5366 21 1 12.9163 4.4778 1.9000 22 1 14.0380 4.9318 -0.2012 23 1 12.3632 6.4727 0.6371 24 6 3.3856 1.2693 0.6934 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.4531 2.4279 -1.7817 29 1 2.3550 0.9163 -2.1153 30 1 3.4307 3.5643 -0.9988 31 1 4.0873 2.5774 -2.3442 32 1 5.1306 3.4955 0.4042 33 1 7.0619 1.5129 -0.6094 34 1 6.4865 2.9233 -1.5300 35 1 9.3578 2.2458 -0.6877 36 1 8.9526 3.7103 -1.6147 37 1 12.6218 3.4985 -1.8456 38 1 3.6113 0.2565 1.0276 39 1 3.3936 1.9534 1.5421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309662114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:46 Heat of formation + Delta-G solvation = -42.641993 kcal Electronic energy + Delta-G solvation = -18090.577729 eV Core-core repulsion = 15225.281235 eV Total energy + Delta-G solvation = -2865.296494 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40448 -37.53336 -36.23328 -34.23061 -33.11172 -31.18046 -28.91671 -27.63660 -26.35083 -25.34270 -22.72264 -21.85993 -20.92803 -20.17730 -17.11187 -16.68118 -16.55022 -16.19446 -15.44211 -14.90887 -14.89610 -14.51488 -13.87165 -13.52366 -13.14729 -12.97325 -12.79640 -12.49071 -12.16326 -12.03065 -11.90113 -11.68606 -11.50995 -11.27817 -11.23200 -11.00901 -10.86774 -10.72599 -10.65510 -10.49738 -10.25353 -9.78230 -9.52912 -9.23364 -8.44704 -8.26660 -6.08944 -4.12160 3.31794 3.35878 3.39480 3.55668 3.57341 3.62533 4.14616 4.41047 4.42541 4.56177 4.80809 4.96130 4.98815 5.07161 5.12721 5.28812 5.30039 5.33598 5.37892 5.46394 5.56143 5.57756 5.70626 5.74950 5.82397 5.95138 6.03938 6.14092 6.18365 6.41037 6.55554 7.02517 7.15833 7.43311 7.46351 7.53865 7.85948 8.23760 8.39829 8.92211 9.53219 11.01909 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.049261 B = 0.003508 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.269827 B = 7979.441694 C = 8129.818110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.082 3.918 4 H 0.062 0.938 5 C -0.142 4.142 6 C -0.155 4.155 7 C 0.086 3.914 8 H 0.089 0.911 9 N -0.685 5.685 10 C 0.067 3.933 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.242 3.758 14 N -0.478 5.478 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.111 4.111 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.092 0.908 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 -7.407 1.181 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.024 3.976 4 H 0.080 0.920 5 C -0.181 4.181 6 C -0.194 4.194 7 C -0.024 4.024 8 H 0.107 0.893 9 N -0.315 5.315 10 C -0.062 4.062 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.075 4.075 14 N -0.155 5.155 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.698 -6.475 1.497 20.789 hybrid contribution 0.491 1.010 -0.391 1.189 sum -19.207 -5.466 1.106 20.000 Atomic orbital electron populations 1.22752 0.81569 1.02537 0.99768 1.87965 1.19251 1.28025 1.94970 1.22922 0.95142 0.84075 0.95472 0.91991 1.22803 0.97626 1.00302 0.97330 1.23197 0.96193 0.99156 1.00900 1.22392 0.91111 0.96231 0.92684 0.89287 1.60610 1.04737 1.16297 1.49849 1.22106 0.88762 1.00962 0.94416 1.19350 0.96999 0.81400 1.03894 0.87114 1.29314 0.91159 0.95252 0.91732 1.81009 1.11770 1.12377 1.10334 1.19156 0.87370 0.98827 0.95221 1.21114 0.94008 1.32447 1.08970 0.92558 1.24954 0.98670 0.95412 0.94930 1.69931 1.20441 1.42625 1.20055 0.86650 0.80899 0.80552 0.79958 1.19996 1.21188 1.20289 1.22243 0.91436 1.03111 0.98143 0.94188 0.94258 0.89831 0.91826 0.90372 0.91318 0.91085 0.84282 0.89004 0.94668 0.94186 0.95783 0.92739 0.90001 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.38 -4.03 10.26 -35.23 -0.36 -4.39 16 3 C 0.08 0.79 3.38 -25.50 -0.09 0.71 16 4 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 5 C -0.14 -1.33 6.55 -25.07 -0.16 -1.49 16 6 C -0.16 -1.61 6.45 -24.73 -0.16 -1.77 16 7 C 0.09 0.97 3.16 -66.05 -0.21 0.76 16 8 H 0.09 1.01 7.85 -51.93 -0.41 0.61 16 9 N -0.69 -8.94 6.28 -104.97 -0.66 -9.60 16 10 C 0.07 0.99 4.98 -3.82 -0.02 0.97 16 11 C 0.01 0.10 2.42 -93.40 -0.23 -0.12 16 12 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 13 C 0.24 4.87 12.97 -20.78 -0.27 4.60 16 14 N -0.48 -10.36 18.53 42.13 0.78 -9.58 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 17 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.11 -1.17 6.36 -25.50 -0.16 -1.33 16 25 H 0.04 0.26 8.10 -51.93 -0.42 -0.16 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.34 4.57 7.34 -39.29 -0.29 4.28 16 33 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 39 H 0.08 0.83 8.04 -51.92 -0.42 0.42 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -29.59 326.93 -6.83 -36.42 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.51 Total: -0.79 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.72 Total: -8.47 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.86 Total: -44.06 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.36 Total: -4.39 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.59 -6.83 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309662114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.224 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds