Wall clock time and date at job start Mon Mar 30 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99621 * 2 1 4 4 H 1.09005 * 110.01760 * 29.94302 * 3 2 1 5 5 C 1.54264 * 110.03472 * 268.55008 * 3 2 1 6 6 C 1.54895 * 104.19709 * 217.05705 * 5 3 2 7 7 C 1.54891 * 102.74636 * 37.93939 * 6 5 3 8 8 H 1.08999 * 110.49061 * 80.86966 * 7 6 5 9 9 N 1.46906 * 110.48548 * 203.37986 * 7 6 5 10 10 C 1.46898 * 110.99888 * 271.75831 * 9 7 6 11 11 C 1.53007 * 109.46764 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46962 * 54.99965 * 11 10 9 13 13 C 1.47200 * 109.47239 * 295.00110 * 11 10 9 14 14 N 8.08141 * 133.15070 * 1.36218 * 2 1 3 15 15 C 1.53003 * 109.46940 * 175.00201 * 11 10 9 16 16 C 1.50697 * 109.46842 * 185.00282 * 15 11 10 17 17 H 1.07995 * 120.00222 * 359.97438 * 16 15 11 18 18 C 1.37877 * 119.99781 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00270 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46705 * 59.99469 * 20 18 16 22 22 H 1.48499 * 109.47303 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46829 * 300.00263 * 20 18 16 24 24 C 1.54082 * 109.97138 * 151.38990 * 3 2 1 25 25 H 1.08998 * 109.47577 * 299.99185 * 1 2 3 26 26 H 1.08992 * 109.47799 * 60.00253 * 1 2 3 27 27 H 1.09012 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08993 * 110.48764 * 98.37495 * 5 3 2 29 29 H 1.09000 * 110.48522 * 335.73168 * 5 3 2 30 30 H 1.08999 * 110.75439 * 279.62781 * 6 5 3 31 31 H 1.08993 * 110.91404 * 156.32559 * 6 5 3 32 32 H 1.00902 * 110.99923 * 35.71772 * 9 7 6 33 33 H 1.08995 * 109.47296 * 299.99911 * 10 9 7 34 34 H 1.08997 * 109.47334 * 60.00212 * 10 9 7 35 35 H 1.09007 * 109.46462 * 304.99730 * 15 11 10 36 36 H 1.08997 * 109.47218 * 64.99496 * 15 11 10 37 37 H 0.97005 * 119.99700 * 180.02562 * 19 18 16 38 38 H 1.09006 * 110.16232 * 0.14366 * 24 3 2 39 39 H 1.09008 * 110.01042 * 238.65104 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3510 2.0073 0.5112 5 6 2.2585 1.7734 -1.4488 6 6 3.5945 2.5535 -1.3723 7 6 4.4189 1.7209 -0.3592 8 1 4.8661 0.8566 -0.8501 9 7 5.4581 2.5515 0.2638 10 6 6.6925 2.5354 -0.5325 11 6 7.7486 3.4101 0.1463 12 1 7.8901 3.0769 1.1743 13 6 7.3008 4.8123 0.1422 14 7 6.9560 5.8942 0.1402 15 6 9.0714 3.2949 -0.6140 16 6 10.1422 4.0575 0.1228 17 1 9.9031 4.5731 1.0411 18 6 11.4269 4.0978 -0.3762 19 7 11.7178 3.4704 -1.4948 20 14 12.7541 5.0437 0.5366 21 1 12.9163 4.4778 1.9000 22 1 14.0380 4.9318 -0.2012 23 1 12.3632 6.4727 0.6371 24 6 3.3856 1.2693 0.6934 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.4531 2.4279 -1.7817 29 1 2.3550 0.9163 -2.1153 30 1 3.4307 3.5643 -0.9988 31 1 4.0873 2.5774 -2.3442 32 1 5.1306 3.4955 0.4042 33 1 7.0619 1.5129 -0.6094 34 1 6.4865 2.9233 -1.5300 35 1 9.3578 2.2458 -0.6877 36 1 8.9526 3.7103 -1.6147 37 1 12.6218 3.4985 -1.8456 38 1 3.6113 0.2565 1.0276 39 1 3.3936 1.9534 1.5421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309662114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:46 Heat of formation + Delta-G solvation = -61.147146 kcal Electronic energy + Delta-G solvation = -18091.380173 eV Core-core repulsion = 15225.281235 eV Total energy + Delta-G solvation = -2866.098938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23983 -38.77441 -37.39849 -35.78011 -34.75808 -32.72624 -29.72117 -28.91678 -27.33587 -26.46788 -24.15815 -23.57057 -21.75000 -21.03677 -18.56475 -18.20944 -17.79042 -17.12219 -16.71287 -16.29391 -15.81549 -15.59596 -14.99739 -14.70135 -14.49400 -14.45124 -14.03809 -13.89416 -13.52440 -13.31934 -13.12529 -12.97139 -12.74259 -12.47984 -12.46796 -12.32620 -12.24010 -12.14889 -11.93774 -11.66339 -11.47143 -11.35135 -11.09454 -10.54583 -10.47909 -9.31727 -8.19133 -6.27499 1.41660 1.42648 1.50081 1.94781 1.96934 2.41768 2.87794 3.15667 3.15963 3.25762 3.63284 3.71542 4.12022 4.21568 4.28575 4.39257 4.46143 4.51599 4.55047 4.61668 4.63801 4.71205 4.75877 4.90374 4.93740 4.97811 5.00114 5.05045 5.17785 5.24066 5.32357 5.47722 5.63513 5.79763 6.07398 6.22239 6.35691 6.38214 6.75561 6.87574 7.41021 8.91608 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.049261 B = 0.003508 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.269827 B = 7979.441694 C = 8129.818110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.083 3.917 4 H 0.073 0.927 5 C -0.136 4.136 6 C -0.152 4.152 7 C 0.085 3.915 8 H 0.088 0.912 9 N -0.684 5.684 10 C 0.079 3.921 11 C 0.018 3.982 12 H 0.123 0.877 13 C 0.252 3.748 14 N -0.504 5.504 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.108 4.108 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.337 0.663 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.000 1.000 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -7.674 1.831 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.025 3.975 4 H 0.091 0.909 5 C -0.174 4.174 6 C -0.192 4.192 7 C -0.025 4.025 8 H 0.107 0.893 9 N -0.314 5.314 10 C -0.051 4.051 11 C -0.004 4.004 12 H 0.141 0.859 13 C -0.064 4.064 14 N -0.182 5.182 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.774 3.226 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.146 4.146 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.699 -6.751 2.157 21.878 hybrid contribution 0.751 1.071 -0.596 1.438 sum -19.948 -5.679 1.561 20.799 Atomic orbital electron populations 1.22934 0.80048 1.03616 1.00605 1.87930 1.21009 1.28396 1.95096 1.22909 0.94809 0.84227 0.95542 0.90871 1.22757 0.97319 1.00170 0.97188 1.23144 0.96668 0.99017 1.00348 1.22432 0.90859 0.95972 0.93188 0.89345 1.60589 1.04665 1.16397 1.49703 1.21941 0.88640 1.00581 0.93985 1.19240 0.95850 0.81144 1.04152 0.85936 1.29618 0.90473 0.95409 0.90895 1.81011 1.12734 1.13137 1.11284 1.18978 0.89081 0.97746 0.94203 1.21542 0.95047 1.32287 1.09006 0.92754 1.25723 1.00929 0.96413 0.95742 1.70029 1.20929 1.44027 1.21368 0.85746 0.78532 0.78928 0.79362 1.18765 1.20714 1.20654 1.22189 0.91832 1.02620 0.97950 0.93308 0.93429 0.88755 0.90569 0.90719 0.91517 0.91422 0.84482 0.87843 0.94814 0.94591 0.98143 0.92697 0.90656 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.40 -7.86 10.26 -148.98 -1.53 -9.39 16 3 C 0.08 1.46 3.38 31.39 0.11 1.57 16 4 H 0.07 1.12 7.82 -2.38 -0.02 1.10 16 5 C -0.14 -2.30 6.55 31.67 0.21 -2.09 16 6 C -0.15 -2.95 6.45 31.89 0.21 -2.75 16 7 C 0.09 1.80 3.16 45.99 0.15 1.95 16 8 H 0.09 1.89 7.85 -2.39 -0.02 1.87 16 9 N -0.68 -16.87 6.28 -486.02 -3.05 -19.92 16 10 C 0.08 2.22 4.98 86.31 0.43 2.65 16 11 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 12 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 13 C 0.25 9.97 12.97 89.45 1.16 11.13 16 14 N -0.50 -21.56 18.53 20.00 0.37 -21.19 16 15 C 0.04 1.79 4.42 29.85 0.13 1.92 16 16 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 17 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.92 -53.26 13.29 21.45 0.28 -52.98 16 20 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C -0.11 -2.11 6.36 31.39 0.20 -1.91 16 25 H 0.05 0.53 8.10 -2.39 -0.02 0.51 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.32 8.08 -2.39 -0.02 1.31 16 30 H 0.07 1.33 7.81 -2.39 -0.02 1.31 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.34 8.62 7.34 -89.69 -0.66 7.96 16 33 H 0.10 2.71 8.08 -2.39 -0.02 2.69 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 38 H 0.07 1.57 7.96 -2.38 -0.02 1.55 16 39 H 0.08 1.55 8.04 -2.38 -0.02 1.53 16 Total: -1.00 -61.67 326.93 2.93 -58.73 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.36 Total: 12.01 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.47 Total: -12.85 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -2.40 Total: -94.09 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.53 Total: -9.39 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -61.67 2.93 -58.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309662114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.413 kcal (2) G-P(sol) polarization free energy of solvation -61.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds