Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00155 * 2 1 4 4 H 1.08996 * 110.81392 * 31.87916 * 3 2 1 5 5 C 1.54892 * 110.75321 * 268.54825 * 3 2 1 6 6 C 1.54258 * 104.19531 * 203.73895 * 5 3 2 7 7 C 1.53878 * 106.59933 * 23.61081 * 6 5 3 8 8 H 1.09000 * 110.02845 * 240.66599 * 7 6 5 9 9 N 1.46900 * 110.03228 * 119.28481 * 7 6 5 10 10 C 1.46895 * 111.00300 * 86.45677 * 9 7 6 11 11 C 1.52997 * 109.47252 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46832 * 54.99914 * 11 10 9 13 13 C 1.47194 * 109.47306 * 294.99867 * 11 10 9 14 14 N 7.65158 * 163.73448 * 39.24256 * 2 1 3 15 15 C 1.53006 * 109.47127 * 174.99593 * 11 10 9 16 16 C 1.50699 * 109.47053 * 184.99965 * 15 11 10 17 17 H 1.07995 * 119.99640 * 0.02562 * 16 15 11 18 18 C 1.37872 * 119.99593 * 179.97438 * 16 15 11 19 19 N 1.31519 * 120.00495 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99694 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47325 * 60.00483 * 20 18 16 22 22 H 1.48506 * 109.47112 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47314 * 300.00336 * 20 18 16 24 24 C 1.54267 * 106.59763 * 359.97438 * 7 6 5 25 25 H 1.09000 * 109.47235 * 299.99724 * 1 2 3 26 26 H 1.09002 * 109.47482 * 60.00062 * 1 2 3 27 27 H 1.09004 * 109.46917 * 180.02562 * 1 2 3 28 28 H 1.08997 * 110.48700 * 85.05832 * 5 3 2 29 29 H 1.09006 * 110.48575 * 322.42183 * 5 3 2 30 30 H 1.08998 * 110.03699 * 264.32554 * 6 5 3 31 31 H 1.09003 * 110.07700 * 142.91565 * 6 5 3 32 32 H 1.00899 * 110.99668 * 210.40722 * 9 7 6 33 33 H 1.08998 * 109.47289 * 59.99712 * 10 9 7 34 34 H 1.09006 * 109.46834 * 300.00029 * 10 9 7 35 35 H 1.08997 * 109.47395 * 305.00572 * 15 11 10 36 36 H 1.09004 * 109.46579 * 64.99848 * 15 11 10 37 37 H 0.97000 * 120.00169 * 179.97438 * 19 18 16 38 38 H 1.09001 * 110.48334 * 95.06818 * 24 7 6 39 39 H 1.08996 * 110.48622 * 217.71358 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3774 2.0112 0.5381 5 6 2.2670 1.7920 -1.4479 6 6 3.3890 2.8404 -1.3014 7 6 4.1315 2.5099 0.0052 8 1 4.0636 3.3503 0.6960 9 7 5.5402 2.2056 -0.2796 10 6 6.3480 3.4321 -0.3099 11 6 7.8057 3.0755 -0.6080 12 1 7.8570 2.4984 -1.5312 13 6 8.3521 2.2767 0.5010 14 7 8.7743 1.6598 1.3558 15 6 8.6234 4.3594 -0.7630 16 6 10.0302 4.0120 -1.1771 17 1 10.3125 2.9790 -1.3161 18 6 10.9562 5.0132 -1.3793 19 7 10.6122 6.2713 -1.2104 20 14 12.6998 4.5827 -1.8932 21 1 12.6691 3.8557 -3.1877 22 1 13.4935 5.8289 -2.0436 23 1 13.3231 3.7215 -0.8565 24 6 3.4344 1.2725 0.6074 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.3685 2.2500 -1.8615 29 1 2.5978 0.9643 -2.0755 30 1 2.9601 3.8408 -1.2443 31 1 4.0741 2.7759 -2.1467 32 1 5.9097 1.5457 0.3882 33 1 6.2869 3.9314 0.6571 34 1 5.9701 4.0970 -1.0866 35 1 8.1663 4.9917 -1.5241 36 1 8.6455 4.8930 0.1872 37 1 11.2638 6.9756 -1.3523 38 1 3.9534 0.3607 0.3119 39 1 3.3882 1.3515 1.6935 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309662116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -41.035217 kcal Electronic energy + Delta-G solvation = -18082.196409 eV Core-core repulsion = 15216.969590 eV Total energy + Delta-G solvation = -2865.226819 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34187 -37.52840 -36.25938 -34.23615 -33.12956 -31.19690 -28.92918 -27.65815 -26.32310 -25.36715 -22.82770 -21.83668 -20.88783 -19.83203 -17.16331 -16.74931 -16.49408 -16.06032 -15.47876 -15.15822 -14.97234 -14.61038 -13.94451 -13.42681 -13.13933 -13.04125 -12.78434 -12.53733 -12.14944 -11.90916 -11.71719 -11.62265 -11.35086 -11.31563 -11.21284 -11.05152 -10.91916 -10.69359 -10.57022 -10.51509 -10.24011 -9.73764 -9.52992 -9.23446 -8.45006 -8.32963 -6.09196 -4.12393 3.31806 3.35821 3.39579 3.49136 3.58576 3.63490 4.24751 4.42044 4.43577 4.57967 4.77363 4.81563 5.03125 5.06267 5.18152 5.27933 5.28853 5.36162 5.39034 5.51579 5.57614 5.60627 5.70437 5.77390 5.91938 5.94786 6.09785 6.16945 6.21973 6.40405 6.55186 7.01833 7.16653 7.42917 7.46246 7.53471 7.85786 8.23561 8.40828 8.92023 9.53052 11.01660 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.003578 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.811423 B = 7824.351968 C = 8126.848220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.083 3.917 4 H 0.067 0.933 5 C -0.142 4.142 6 C -0.115 4.115 7 C 0.084 3.916 8 H 0.050 0.950 9 N -0.684 5.684 10 C 0.067 3.933 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.241 3.759 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.123 4.123 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.339 0.661 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 -6.314 0.181 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.180 4.180 6 C -0.153 4.153 7 C -0.026 4.026 8 H 0.068 0.932 9 N -0.316 5.316 10 C -0.063 4.063 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.075 4.075 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.161 4.161 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.158 0.842 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.511 -7.236 0.784 20.825 hybrid contribution 0.762 0.596 0.342 1.026 sum -18.750 -6.640 1.126 19.923 Atomic orbital electron populations 1.22752 0.81381 1.02576 0.99831 1.87921 1.19386 1.27762 1.94950 1.23126 0.94221 0.84124 0.96040 0.91494 1.22805 0.98604 0.99530 0.97023 1.22158 0.96830 0.97716 0.98604 1.22062 0.88713 0.95963 0.95849 0.93215 1.60762 1.01273 1.13833 1.55721 1.22130 0.91686 0.91448 1.01065 1.19336 0.92662 0.97913 0.91668 0.87114 1.29299 0.92195 0.92205 0.93825 1.81012 1.09971 1.12073 1.12325 1.19155 0.93977 0.89005 0.98424 1.21116 0.95286 0.93080 1.47036 0.92541 1.24951 0.98847 0.94954 0.95206 1.69929 1.35062 0.99061 1.49040 0.86650 0.84391 0.77725 0.79290 1.19993 1.21195 1.20278 1.22566 0.94414 0.99486 0.99615 0.94218 0.94089 0.89806 0.91981 0.90404 0.91952 0.89633 0.84227 0.94714 0.89056 0.94218 0.95792 0.92743 0.89406 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.38 -4.12 10.49 -35.23 -0.37 -4.49 16 3 C 0.08 0.81 3.34 -24.75 -0.08 0.73 16 4 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 5 C -0.14 -1.35 6.55 -25.08 -0.16 -1.51 16 6 C -0.11 -1.17 6.48 -25.62 -0.17 -1.34 16 7 C 0.08 0.94 3.24 -66.59 -0.22 0.72 16 8 H 0.05 0.55 7.83 -51.93 -0.41 0.14 16 9 N -0.68 -9.04 6.15 -105.54 -0.65 -9.69 16 10 C 0.07 0.98 4.94 -3.83 -0.02 0.96 16 11 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 12 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 13 C 0.24 4.90 12.97 -20.78 -0.27 4.63 16 14 N -0.48 -10.45 18.53 42.13 0.78 -9.67 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.12 -1.30 5.98 -25.09 -0.15 -1.45 16 25 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.34 4.69 7.43 -39.29 -0.29 4.40 16 33 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 38 H 0.09 1.04 7.98 -51.93 -0.41 0.63 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -29.79 327.12 -6.84 -36.62 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.53 Total: -1.06 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.71 Total: -8.15 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.87 Total: -44.22 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.37 Total: -4.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.79 -6.84 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309662116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds