Wall clock time and date at job start Mon Mar 30 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.84967 * 313.31426 * 4 3 2 6 6 C 1.53785 * 113.61598 * 84.50290 * 4 3 2 7 7 C 1.53784 * 87.07742 * 139.98251 * 6 4 3 8 8 C 1.53780 * 113.61358 * 182.00510 * 4 3 2 9 9 H 1.08994 * 113.61530 * 105.47238 * 8 4 3 10 10 N 1.46897 * 113.61483 * 334.56244 * 8 4 3 11 11 C 1.46897 * 110.99841 * 155.00054 * 10 8 4 12 12 C 1.53002 * 109.47266 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46811 * 305.00232 * 12 11 10 14 14 C 1.47192 * 109.47180 * 64.99992 * 12 11 10 15 15 N 5.83728 * 81.51161 * 2.38356 * 2 1 3 16 16 C 1.52994 * 109.47049 * 185.00241 * 12 11 10 17 17 C 1.50706 * 109.47128 * 174.99840 * 16 12 11 18 18 H 1.07996 * 119.99675 * 359.97438 * 17 16 12 19 19 C 1.37877 * 120.00132 * 180.02562 * 17 16 12 20 20 N 1.31506 * 120.00037 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46893 * 90.00346 * 21 19 17 23 23 H 1.48501 * 109.47292 * 210.00075 * 21 19 17 24 24 H 1.48501 * 109.47559 * 330.00513 * 21 19 17 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 1.08998 * 113.61647 * 254.53361 * 6 4 3 31 31 H 1.09006 * 113.60662 * 25.43609 * 6 4 3 32 32 H 1.08997 * 113.61462 * 89.12604 * 7 6 4 33 33 H 1.09005 * 113.61103 * 219.94073 * 7 6 4 34 34 H 1.00894 * 111.00367 * 278.95850 * 10 8 4 35 35 H 1.08999 * 109.47269 * 300.00337 * 11 10 8 36 36 H 1.09000 * 109.47155 * 60.00444 * 11 10 8 37 37 H 1.09003 * 109.47554 * 294.99960 * 16 12 11 38 38 H 1.09005 * 109.47388 * 54.99925 * 16 12 11 39 39 H 0.96994 * 120.00645 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9027 0.4644 0.7318 6 6 4.1395 1.0011 -1.4017 7 6 5.2642 1.9504 -0.9554 8 6 4.2608 2.5397 0.0500 9 1 4.6986 2.7655 1.0223 10 7 3.4683 3.6514 -0.4924 11 6 3.8961 4.9331 0.0839 12 6 3.0495 6.0642 -0.5033 13 1 3.1090 6.0353 -1.5913 14 6 1.6485 5.8970 -0.0839 15 7 0.5674 5.7683 0.2401 16 6 3.5757 7.4095 0.0007 17 6 2.8219 8.5277 -0.6721 18 1 2.0456 8.3014 -1.3879 19 6 3.1242 9.8396 -0.3746 20 7 2.4661 10.8153 -0.9613 21 14 4.4674 10.2310 0.8631 22 1 5.7695 10.3509 0.1590 23 1 4.1539 11.5122 1.5454 24 1 4.5470 9.1412 1.8687 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 4.4794 -0.0151 -1.6012 31 1 3.5183 1.4054 -2.2009 32 1 6.1051 1.4405 -0.4854 33 1 5.5740 2.6538 -1.7283 34 1 3.5182 3.6732 -1.4999 35 1 3.7662 4.9065 1.1658 36 1 4.9464 5.1050 -0.1519 37 1 3.4344 7.4738 1.0797 38 1 4.6370 7.4950 -0.2324 39 1 2.6784 11.7383 -0.7518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378685423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:43 Heat of formation + Delta-G solvation = -10.748170 kcal Electronic energy + Delta-G solvation = -18355.831319 eV Core-core repulsion = 15491.917845 eV Total energy + Delta-G solvation = -2863.913474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85652 -37.48271 -36.77502 -34.35684 -33.04811 -31.19787 -29.11861 -27.09739 -26.11017 -24.48928 -22.82352 -22.75360 -21.49313 -19.02047 -17.27898 -16.88298 -16.41401 -15.96602 -15.64194 -15.37123 -14.55358 -14.14931 -14.10961 -13.64287 -13.58425 -13.12658 -12.91719 -12.57219 -12.38187 -12.18322 -12.01029 -11.71515 -11.43164 -11.34650 -11.23616 -10.86263 -10.75865 -10.51315 -10.44842 -10.33988 -9.95113 -9.74644 -9.56595 -9.35091 -8.64307 -8.41167 -6.12977 -4.13890 3.23673 3.33023 3.33602 3.65829 3.72821 3.74742 4.00948 4.36035 4.42836 4.61572 4.73982 4.84096 4.89871 5.21839 5.24389 5.29055 5.36872 5.39542 5.45658 5.52156 5.59232 5.61345 5.64822 5.77349 5.84312 5.87415 5.88192 6.06661 6.13045 6.25788 6.29809 6.88766 6.99880 7.09424 7.19706 7.36210 7.61078 8.37874 8.51144 8.90477 9.46776 11.00154 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.004564 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.696838 B = 6133.463980 C = 6779.069359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.400 6.400 3 C 0.083 3.917 4 C -0.100 4.100 5 H 0.095 0.905 6 C -0.131 4.131 7 C -0.169 4.169 8 C 0.077 3.923 9 H 0.086 0.914 10 N -0.674 5.674 11 C 0.065 3.935 12 C 0.019 3.981 13 H 0.104 0.896 14 C 0.252 3.748 15 N -0.471 5.471 16 C -0.005 4.005 17 C -0.529 4.529 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -19.404 0.776 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.320 6.320 3 C 0.007 3.993 4 C -0.119 4.119 5 H 0.114 0.886 6 C -0.168 4.168 7 C -0.208 4.208 8 C -0.034 4.034 9 H 0.104 0.896 10 N -0.305 5.305 11 C -0.065 4.065 12 C -0.003 4.003 13 H 0.122 0.878 14 C -0.065 4.065 15 N -0.147 5.147 16 C -0.044 4.044 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.071 -19.625 1.698 20.115 hybrid contribution 1.655 0.892 -0.007 1.880 sum 5.726 -18.733 1.691 19.661 Atomic orbital electron populations 1.22675 0.81397 1.02093 1.00138 1.87805 1.19406 1.29221 1.95538 1.22331 0.92542 0.83250 1.01162 1.22677 0.93632 0.97416 0.98189 0.88647 1.22920 0.97370 0.99645 0.96889 1.23569 0.97548 0.99905 0.99821 1.22629 0.92155 0.90436 0.98224 0.89586 1.60333 1.55816 1.02541 1.11777 1.22144 0.97103 0.87045 1.00195 1.18958 0.82972 0.96794 1.01578 0.87789 1.28700 0.94512 0.90751 0.92570 1.80996 1.12719 1.11121 1.09885 1.19632 0.97007 0.90339 0.97395 1.21025 1.20520 0.89489 1.25626 0.90798 1.24989 0.96112 0.96284 0.95701 1.69898 1.41152 0.99587 1.42832 0.86819 0.82402 0.78183 0.82158 1.20053 1.21292 1.18858 0.94219 0.94174 0.90116 0.92431 0.93198 0.91608 0.90029 0.89835 0.91112 0.83514 0.90363 0.93021 0.95640 0.94934 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.40 -5.11 10.70 -35.23 -0.38 -5.49 16 3 C 0.08 1.02 5.13 37.16 0.19 1.21 16 4 C -0.10 -1.03 3.99 -89.81 -0.36 -1.39 16 5 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.13 -1.20 7.40 -25.92 -0.19 -1.39 16 7 C -0.17 -1.42 7.60 -25.92 -0.20 -1.62 16 8 C 0.08 0.76 4.14 -66.90 -0.28 0.48 16 9 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 10 N -0.67 -7.75 5.20 -105.87 -0.55 -8.30 16 11 C 0.06 0.84 4.89 -3.82 -0.02 0.82 16 12 C 0.02 0.32 2.35 -93.41 -0.22 0.10 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.25 5.06 13.67 -20.77 -0.28 4.78 16 15 N -0.47 -10.47 18.54 42.15 0.78 -9.69 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 17 C -0.53 -14.06 9.15 -34.44 -0.32 -14.38 16 18 H 0.07 2.16 7.84 -52.49 -0.41 1.75 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 21 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.35 3.64 8.12 -39.29 -0.32 3.32 16 35 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 38 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -31.09 326.77 -6.39 -37.49 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.52 Total: -0.35 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.75 Total: -8.23 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.00 Total: -44.11 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.38 Total: -5.49 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.09 -6.39 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378685423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.738 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds