Wall clock time and date at job start Mon Mar 30 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.84967 * 313.31426 * 4 3 2 6 6 C 1.53785 * 113.61598 * 84.50290 * 4 3 2 7 7 C 1.53784 * 87.07742 * 139.98251 * 6 4 3 8 8 C 1.53780 * 113.61358 * 182.00510 * 4 3 2 9 9 H 1.08994 * 113.61530 * 105.47238 * 8 4 3 10 10 N 1.46897 * 113.61483 * 334.56244 * 8 4 3 11 11 C 1.46897 * 110.99841 * 155.00054 * 10 8 4 12 12 C 1.53002 * 109.47266 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46811 * 305.00232 * 12 11 10 14 14 C 1.47192 * 109.47180 * 64.99992 * 12 11 10 15 15 N 5.83728 * 81.51161 * 2.38356 * 2 1 3 16 16 C 1.52994 * 109.47049 * 185.00241 * 12 11 10 17 17 C 1.50706 * 109.47128 * 174.99840 * 16 12 11 18 18 H 1.07996 * 119.99675 * 359.97438 * 17 16 12 19 19 C 1.37877 * 120.00132 * 180.02562 * 17 16 12 20 20 N 1.31506 * 120.00037 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46893 * 90.00346 * 21 19 17 23 23 H 1.48501 * 109.47292 * 210.00075 * 21 19 17 24 24 H 1.48501 * 109.47559 * 330.00513 * 21 19 17 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 1.08998 * 113.61647 * 254.53361 * 6 4 3 31 31 H 1.09006 * 113.60662 * 25.43609 * 6 4 3 32 32 H 1.08997 * 113.61462 * 89.12604 * 7 6 4 33 33 H 1.09005 * 113.61103 * 219.94073 * 7 6 4 34 34 H 1.00894 * 111.00367 * 278.95850 * 10 8 4 35 35 H 1.08999 * 109.47269 * 300.00337 * 11 10 8 36 36 H 1.09000 * 109.47155 * 60.00444 * 11 10 8 37 37 H 1.09003 * 109.47554 * 294.99960 * 16 12 11 38 38 H 1.09005 * 109.47388 * 54.99925 * 16 12 11 39 39 H 0.96994 * 120.00645 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9027 0.4644 0.7318 6 6 4.1395 1.0011 -1.4017 7 6 5.2642 1.9504 -0.9554 8 6 4.2608 2.5397 0.0500 9 1 4.6986 2.7655 1.0223 10 7 3.4683 3.6514 -0.4924 11 6 3.8961 4.9331 0.0839 12 6 3.0495 6.0642 -0.5033 13 1 3.1090 6.0353 -1.5913 14 6 1.6485 5.8970 -0.0839 15 7 0.5674 5.7683 0.2401 16 6 3.5757 7.4095 0.0007 17 6 2.8219 8.5277 -0.6721 18 1 2.0456 8.3014 -1.3879 19 6 3.1242 9.8396 -0.3746 20 7 2.4661 10.8153 -0.9613 21 14 4.4674 10.2310 0.8631 22 1 5.7695 10.3509 0.1590 23 1 4.1539 11.5122 1.5454 24 1 4.5470 9.1412 1.8687 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 4.4794 -0.0151 -1.6012 31 1 3.5183 1.4054 -2.2009 32 1 6.1051 1.4405 -0.4854 33 1 5.5740 2.6538 -1.7283 34 1 3.5182 3.6732 -1.4999 35 1 3.7662 4.9065 1.1658 36 1 4.9464 5.1050 -0.1519 37 1 3.4344 7.4738 1.0797 38 1 4.6370 7.4950 -0.2324 39 1 2.6784 11.7383 -0.7518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378685423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:43 Heat of formation + Delta-G solvation = -31.623654 kcal Electronic energy + Delta-G solvation = -18356.736548 eV Core-core repulsion = 15491.917845 eV Total energy + Delta-G solvation = -2864.818703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66672 -38.59889 -38.04560 -35.85286 -34.78470 -32.74196 -29.97013 -28.68172 -26.96678 -25.42838 -23.98943 -23.56826 -23.24562 -19.84111 -18.93882 -18.47927 -17.42677 -16.90300 -16.59211 -16.37911 -16.20314 -15.31970 -15.28565 -14.91712 -14.58489 -14.32841 -14.27193 -13.82548 -13.78327 -13.48880 -13.31056 -13.09060 -12.78178 -12.49147 -12.35701 -12.19133 -12.07579 -11.78807 -11.65689 -11.48257 -11.30401 -11.23380 -10.93700 -10.72280 -10.51681 -9.25729 -8.23991 -6.29632 1.42984 1.46522 1.56433 2.06964 2.13969 2.41788 2.86682 3.08998 3.13438 3.33800 3.68719 3.89928 4.00550 4.12797 4.23055 4.36374 4.43926 4.45648 4.55920 4.67379 4.69833 4.71387 4.77793 4.83160 4.86483 4.96046 5.03776 5.09722 5.16621 5.25203 5.33558 5.44667 5.49040 5.65368 6.14060 6.26680 6.28509 6.53486 6.78328 6.92162 7.35056 8.93058 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.004564 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.696838 B = 6133.463980 C = 6779.069359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.087 3.913 4 C -0.103 4.103 5 H 0.100 0.900 6 C -0.129 4.129 7 C -0.154 4.154 8 C 0.077 3.923 9 H 0.093 0.907 10 N -0.686 5.686 11 C 0.078 3.922 12 C 0.024 3.976 13 H 0.116 0.884 14 C 0.262 3.738 15 N -0.517 5.517 16 C -0.003 4.003 17 C -0.531 4.531 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.949 3.051 22 H -0.256 1.256 23 H -0.297 1.297 24 H -0.237 1.237 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.351 0.649 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.017 -20.933 1.599 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C 0.011 3.989 4 C -0.123 4.123 5 H 0.118 0.882 6 C -0.167 4.167 7 C -0.193 4.193 8 C -0.034 4.034 9 H 0.111 0.889 10 N -0.318 5.318 11 C -0.051 4.051 12 C 0.002 3.998 13 H 0.134 0.866 14 C -0.054 4.054 15 N -0.195 5.195 16 C -0.042 4.042 17 C -0.569 4.569 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.772 3.228 22 H -0.181 1.181 23 H -0.224 1.224 24 H -0.160 1.160 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.955 -21.196 2.515 22.450 hybrid contribution 0.629 1.323 -0.337 1.503 sum 7.585 -19.873 2.179 21.383 Atomic orbital electron populations 1.22832 0.80458 1.03506 1.00018 1.87788 1.20573 1.29460 1.95512 1.22292 0.94038 0.82907 0.99667 1.22754 0.92109 0.98137 0.99265 0.88196 1.22895 0.97617 1.00242 0.95908 1.23495 0.97203 0.99383 0.99243 1.22634 0.92308 0.89429 0.98996 0.88888 1.60222 1.56808 1.02452 1.12306 1.21977 0.97411 0.85977 0.99772 1.19084 0.81470 0.96791 1.02456 0.86583 1.29465 0.95136 0.89429 0.91374 1.80993 1.14258 1.12690 1.11546 1.19583 0.97909 0.89982 0.96716 1.21420 1.19496 0.91496 1.24517 0.95357 1.26045 0.99090 0.96148 0.98120 1.70086 1.43922 1.00109 1.45474 0.85682 0.79317 0.78072 0.79747 1.18059 1.22365 1.16023 0.94441 0.94196 0.88009 0.93508 0.95045 0.91190 0.90592 0.88412 0.90427 0.82870 0.90469 0.90090 0.95578 0.91790 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -10.32 10.70 -148.98 -1.59 -11.92 16 3 C 0.09 2.10 5.13 71.98 0.37 2.47 16 4 C -0.10 -1.95 3.99 -10.27 -0.04 -1.99 16 5 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.13 -2.08 7.40 31.12 0.23 -1.85 16 7 C -0.15 -2.04 7.60 31.12 0.24 -1.80 16 8 C 0.08 1.30 4.14 45.44 0.19 1.49 16 9 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 10 N -0.69 -14.10 5.20 -488.86 -2.54 -16.65 16 11 C 0.08 1.75 4.89 86.30 0.42 2.18 16 12 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 13 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 14 C 0.26 10.48 13.67 89.44 1.22 11.70 16 15 N -0.52 -23.39 18.54 20.00 0.37 -23.02 16 16 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 17 C -0.53 -28.33 9.15 25.60 0.23 -28.10 16 18 H 0.03 1.71 7.84 -2.91 -0.02 1.69 16 19 C 0.00 0.14 5.47 84.66 0.46 0.60 16 20 N -0.96 -58.91 13.96 21.45 0.30 -58.61 16 21 Si 0.95 40.99 27.47 68.60 1.88 42.88 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 23 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.20 7.61 -2.39 -0.02 1.19 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.31 7.87 -2.38 -0.02 1.29 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.97 8.07 -2.38 -0.02 0.95 16 34 H 0.35 6.53 8.12 -89.70 -0.73 5.81 16 35 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.03 1.03 7.20 -2.39 -0.02 1.02 16 38 H 0.06 2.17 7.57 -2.38 -0.02 2.16 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.48 326.77 3.30 -66.17 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.24 Total: 13.89 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.65 Total: -12.76 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -1.87 Total: -98.27 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.59 Total: -11.92 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.88 Total: 42.88 kcal Total: -69.48 3.30 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378685423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.551 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds