Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30850 * 125.83897 * 2 1 4 4 N 1.40065 * 108.38800 * 180.28233 * 3 2 1 5 5 C 1.46497 * 126.04010 * 179.73849 * 4 3 2 6 6 C 1.35253 * 107.91717 * 359.71604 * 4 3 2 7 7 N 1.39205 * 126.22172 * 180.02562 * 6 4 3 8 8 C 1.46898 * 110.99896 * 305.95699 * 7 6 4 9 9 C 1.46906 * 110.99466 * 69.90920 * 7 6 4 10 10 C 1.36176 * 107.55468 * 359.97438 * 6 4 3 11 11 C 1.50703 * 126.09023 * 179.97438 * 10 6 4 12 12 N 1.46904 * 109.46913 * 90.00294 * 11 10 6 13 13 C 1.46900 * 110.99898 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46856 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99950 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99726 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00461 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99828 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47356 * 90.00002 * 18 16 14 20 20 H 1.48505 * 109.47223 * 209.99851 * 18 16 14 21 21 H 1.48497 * 109.47131 * 330.00133 * 18 16 14 22 22 H 1.08997 * 109.47149 * 270.18663 * 1 2 3 23 23 H 1.08995 * 109.47288 * 30.18657 * 1 2 3 24 24 H 1.09001 * 109.46725 * 150.18683 * 1 2 3 25 25 H 1.08997 * 109.47088 * 270.49573 * 5 4 3 26 26 H 1.08995 * 109.47424 * 30.49979 * 5 4 3 27 27 H 1.08997 * 109.47232 * 150.50004 * 5 4 3 28 28 H 1.08997 * 109.47465 * 63.95435 * 8 7 6 29 29 H 1.08999 * 109.46784 * 183.95086 * 8 7 6 30 30 H 1.08996 * 109.47204 * 303.94822 * 8 7 6 31 31 H 1.08995 * 109.47341 * 60.56805 * 9 7 6 32 32 H 1.09010 * 109.46565 * 180.56109 * 9 7 6 33 33 H 1.08991 * 109.47359 * 300.55912 * 9 7 6 34 34 H 1.09005 * 109.47090 * 330.00677 * 11 10 6 35 35 H 1.08991 * 109.47079 * 210.00445 * 11 10 6 36 36 H 1.00894 * 110.99939 * 56.04342 * 12 11 10 37 37 H 1.08998 * 109.47102 * 299.99935 * 13 12 11 38 38 H 1.08997 * 109.47006 * 60.00177 * 13 12 11 39 39 H 0.96995 * 120.00633 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0608 0.0000 4 7 3.6093 0.6407 -0.0065 5 6 4.7868 1.5123 -0.0141 6 6 3.6203 -0.7118 -0.0041 7 7 4.7500 -1.5252 -0.0083 8 6 5.6421 -1.1813 -1.1236 9 6 5.4589 -1.4480 1.2761 10 6 2.3254 -1.1330 0.0043 11 6 1.8580 -2.5657 0.0092 12 7 1.7145 -3.0292 1.3958 13 6 1.2599 -4.4254 1.4398 14 6 1.1251 -4.8648 2.8750 15 1 1.3547 -4.1760 3.6745 16 6 0.7088 -6.1463 3.1674 17 7 0.4297 -6.9853 2.1939 18 14 0.5410 -6.6907 4.9464 19 1 -0.8345 -6.4009 5.4253 20 1 0.8022 -8.1494 5.0444 21 1 1.5220 -5.9548 5.7839 22 1 -0.3633 0.0033 1.0276 23 1 -0.3633 0.8883 -0.5167 24 1 -0.3633 -0.8917 -0.5109 25 1 5.0680 1.7341 -1.0436 26 1 4.5548 2.4409 0.5073 27 1 5.6136 1.0104 0.4882 28 1 6.0152 -0.1658 -0.9907 29 1 6.4812 -1.8767 -1.1452 30 1 5.0920 -1.2464 -2.0623 31 1 4.7993 -1.7842 2.0760 32 1 6.3427 -2.0852 1.2420 33 1 5.7609 -0.4176 1.4631 34 1 2.5884 -3.1880 -0.5081 35 1 0.8962 -2.6358 -0.4987 36 1 1.0913 -2.4291 1.9150 37 1 0.2940 -4.5089 0.9416 38 1 1.9863 -5.0602 0.9325 39 1 0.1364 -7.8867 2.3996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381484026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = 90.485039 kcal Electronic energy + Delta-G solvation = -18968.491412 eV Core-core repulsion = 16141.260490 eV Total energy + Delta-G solvation = -2827.230922 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35750 -37.12782 -35.34075 -33.42598 -32.20244 -30.17342 -29.26383 -27.71350 -27.07030 -25.44725 -24.02774 -23.15557 -21.21242 -19.56874 -19.37548 -16.76872 -16.21044 -15.81042 -15.42822 -14.73081 -14.71309 -14.47734 -14.08672 -13.58507 -13.13112 -12.95834 -12.82991 -12.61269 -12.39076 -12.31282 -12.00833 -11.88341 -11.79954 -11.67708 -11.29435 -11.08108 -10.68434 -10.56546 -10.25129 -9.81551 -9.09081 -8.92756 -8.63026 -8.39288 -8.00895 -7.04866 -5.94216 -3.95255 1.94944 2.55960 2.96807 3.36945 3.42770 3.47630 3.69665 4.41895 4.51078 4.92872 4.99092 5.02264 5.04365 5.16516 5.37689 5.40317 5.41545 5.45843 5.60201 5.67159 5.80467 5.83804 5.91838 6.00881 6.09512 6.22614 6.32708 6.56528 6.71352 6.77781 6.98206 7.42124 7.56731 7.58641 7.89907 7.93378 8.26183 8.59312 8.78685 9.15027 9.69160 11.16874 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.005248 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.490939 B = 5333.842243 C = 5847.509612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.081 3.919 3 N -0.299 5.299 4 N -0.401 5.401 5 C 0.098 3.902 6 C 0.255 3.745 7 N -0.458 5.458 8 C 0.015 3.985 9 C 0.025 3.975 10 C -0.185 4.185 11 C 0.142 3.858 12 N -0.681 5.681 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.324 0.676 37 H -0.016 1.016 38 H 0.028 0.972 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 15.151 -6.404 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.123 5.123 4 N -0.188 5.188 5 C -0.044 4.044 6 C 0.037 3.963 7 N -0.180 5.180 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.198 4.198 11 C 0.012 3.988 12 N -0.311 5.311 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.140 0.860 37 H 0.002 0.998 38 H 0.046 0.954 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.411 15.624 -6.439 19.343 hybrid contribution -0.516 -0.316 0.765 0.976 sum 8.895 15.308 -5.674 18.591 Atomic orbital electron populations 1.20187 0.86764 1.03010 1.03195 1.22121 0.96776 0.90306 0.99320 1.77194 0.85894 1.22520 1.26731 1.49017 1.05506 1.04935 1.59384 1.21957 0.84602 0.95175 1.02687 1.19316 0.93377 0.80655 1.02905 1.59594 1.05910 1.47947 1.04558 1.22650 0.96903 0.99521 0.94170 1.22562 0.99450 0.99433 0.90728 1.19674 0.89766 0.96603 1.13714 1.20041 0.97971 0.88660 0.92175 1.60660 1.55154 1.05489 1.09795 1.19533 0.93405 0.83267 0.96954 1.21204 1.43892 0.97335 0.92329 0.92143 1.24971 0.95677 0.96653 0.97271 1.69964 1.46421 1.06143 1.31336 0.86529 0.78284 0.77637 0.85104 1.20810 1.21333 1.19885 0.90331 0.91284 0.90263 0.91252 0.89543 0.90022 0.95148 0.90085 0.90907 0.89201 0.90293 0.95759 0.90852 0.96086 0.85980 0.99795 0.95412 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.26 36.01 0.37 -0.60 16 2 C 0.08 1.32 7.21 -82.44 -0.59 0.73 16 3 N -0.30 -4.92 12.56 33.65 0.42 -4.50 16 4 N -0.40 -5.87 4.02 -67.25 -0.27 -6.14 16 5 C 0.10 0.96 9.62 59.85 0.58 1.54 16 6 C 0.26 4.06 5.51 -153.40 -0.84 3.22 16 7 N -0.46 -6.52 4.99 -189.01 -0.94 -7.46 16 8 C 0.01 0.16 9.21 60.06 0.55 0.71 16 9 C 0.02 0.31 9.37 60.07 0.56 0.88 16 10 C -0.19 -3.25 5.64 -104.79 -0.59 -3.85 16 11 C 0.14 2.76 5.93 -4.97 -0.03 2.73 16 12 N -0.68 -15.28 6.48 -116.33 -0.75 -16.03 16 13 C 0.20 5.23 5.44 -4.97 -0.03 5.21 16 14 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.03 7.24 -51.93 -0.38 0.65 16 25 H 0.07 0.57 7.88 -51.93 -0.41 0.17 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.69 4.72 -51.93 -0.25 0.45 16 28 H 0.03 0.27 5.21 -51.93 -0.27 0.00 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 0.85 8.13 -51.92 -0.42 0.43 16 33 H 0.02 0.26 5.74 -51.93 -0.30 -0.04 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.40 7.24 -51.93 -0.38 0.03 16 36 H 0.32 7.11 8.72 -39.29 -0.34 6.76 16 37 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.02 319.42 -7.55 -40.57 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.09 Total: 1.19 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.44 Total: -2.93 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.81 Total: -60.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.02 -7.55 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381484026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.054 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds